ITK
4.1.0
Insight Segmentation and Registration Toolkit
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#include <itkLevelSetMotionRegistrationFunction.h>
This class encapsulate the PDE which drives the demons registration algorithm. It is used by LevelSetMotionRegistrationFilter to compute the output deformation field which will map a moving image onto a a fixed image.
Non-integer moving image values are obtained by using interpolation. The default interpolator is of type LinearInterpolateImageFunction. The user may set other interpolators via method SetMovingImageInterpolator. Note that the input interpolator must derive from baseclass InterpolateImageFunction.
This class is templated over the fixed image type, moving image type, and the deformation field type.
Definition at line 54 of file itkLevelSetMotionRegistrationFunction.h.
typedef SmartPointer< const Self > itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::ConstPointer |
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
Definition at line 68 of file itkLevelSetMotionRegistrationFunction.h.
typedef double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::CoordRepType |
Interpolator type.
Definition at line 106 of file itkLevelSetMotionRegistrationFunction.h.
typedef CovariantVector< double, itkGetStaticConstMacro(ImageDimension) > itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::CovariantVectorType |
Vector types.
Definition at line 116 of file itkLevelSetMotionRegistrationFunction.h.
typedef LinearInterpolateImageFunction< MovingImageType, CoordRepType > itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::DefaultInterpolatorType |
Definition at line 111 of file itkLevelSetMotionRegistrationFunction.h.
typedef Superclass::DisplacementFieldType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::DisplacementFieldType |
Deformation field type.
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
Definition at line 90 of file itkLevelSetMotionRegistrationFunction.h.
typedef Superclass::DisplacementFieldTypePointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::DisplacementFieldTypePointer |
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
Definition at line 92 of file itkLevelSetMotionRegistrationFunction.h.
typedef ConstNeighborhoodIterator< FixedImageType > itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::FixedImageNeighborhoodIteratorType [protected] |
FixedImage image neighborhood iterator type.
Definition at line 217 of file itkLevelSetMotionRegistrationFunction.h.
typedef Superclass::FixedImagePointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::FixedImagePointer |
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
Definition at line 84 of file itkLevelSetMotionRegistrationFunction.h.
typedef Superclass::FixedImageType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::FixedImageType |
FixedImage image type.
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
Definition at line 83 of file itkLevelSetMotionRegistrationFunction.h.
typedef Superclass::FloatOffsetType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::FloatOffsetType |
A floating point offset from an image grid location. Used for interpolation among grid values in a neighborhood.
Reimplemented from itk::FiniteDifferenceFunction< TDisplacementField >.
Definition at line 102 of file itkLevelSetMotionRegistrationFunction.h.
typedef FixedImageType::IndexType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::IndexType |
Definition at line 85 of file itkLevelSetMotionRegistrationFunction.h.
typedef InterpolatorType::Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::InterpolatorPointer |
Definition at line 108 of file itkLevelSetMotionRegistrationFunction.h.
typedef InterpolateImageFunction< MovingImageType, CoordRepType > itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::InterpolatorType |
Definition at line 107 of file itkLevelSetMotionRegistrationFunction.h.
typedef Superclass::MovingImagePointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::MovingImagePointer |
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
Definition at line 79 of file itkLevelSetMotionRegistrationFunction.h.
typedef MovingImageSmoothingFilterType::Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::MovingImageSmoothingFilterPointer |
Definition at line 123 of file itkLevelSetMotionRegistrationFunction.h.
typedef SmoothingRecursiveGaussianImageFilter< MovingImageType > itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::MovingImageSmoothingFilterType |
Moving image gradient calculator type.
Definition at line 121 of file itkLevelSetMotionRegistrationFunction.h.
typedef Superclass::MovingImageType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::MovingImageType |
MovingImage image type.
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
Definition at line 75 of file itkLevelSetMotionRegistrationFunction.h.
typedef MovingImageType::SpacingType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::MovingSpacingType |
Definition at line 80 of file itkLevelSetMotionRegistrationFunction.h.
typedef Superclass::NeighborhoodType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::NeighborhoodType |
The type of data structure that is passed to this function object to evaluate at a pixel that does not lie on a data set boundary.
Reimplemented from itk::FiniteDifferenceFunction< TDisplacementField >.
Definition at line 101 of file itkLevelSetMotionRegistrationFunction.h.
typedef Superclass::PixelType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::PixelType |
Inherit some enums from the superclass.
Reimplemented from itk::FiniteDifferenceFunction< TDisplacementField >.
Definition at line 99 of file itkLevelSetMotionRegistrationFunction.h.
typedef SmartPointer< Self > itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::Pointer |
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
Definition at line 67 of file itkLevelSetMotionRegistrationFunction.h.
typedef InterpolatorType::PointType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::PointType |
Definition at line 109 of file itkLevelSetMotionRegistrationFunction.h.
typedef Superclass::RadiusType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::RadiusType |
Neighborhood radius type
Reimplemented from itk::FiniteDifferenceFunction< TDisplacementField >.
Definition at line 100 of file itkLevelSetMotionRegistrationFunction.h.
typedef LevelSetMotionRegistrationFunction itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::Self |
Standard class typedefs.
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
Definition at line 62 of file itkLevelSetMotionRegistrationFunction.h.
typedef FixedImageType::SizeType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::SizeType |
Definition at line 86 of file itkLevelSetMotionRegistrationFunction.h.
typedef FixedImageType::SpacingType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::SpacingType |
Definition at line 87 of file itkLevelSetMotionRegistrationFunction.h.
typedef PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField > itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::Superclass |
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
Definition at line 65 of file itkLevelSetMotionRegistrationFunction.h.
typedef Superclass::TimeStepType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::TimeStepType |
Define the TimeStepType to always be double.
Reimplemented from itk::FiniteDifferenceFunction< TDisplacementField >.
Definition at line 103 of file itkLevelSetMotionRegistrationFunction.h.
typedef Vector< double, itkGetStaticConstMacro(ImageDimension) > itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::VectorType |
Vector types.
Definition at line 114 of file itkLevelSetMotionRegistrationFunction.h.
itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::LevelSetMotionRegistrationFunction | ( | ) | [protected] |
itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::~LevelSetMotionRegistrationFunction | ( | ) | [inline, protected] |
Definition at line 212 of file itkLevelSetMotionRegistrationFunction.h.
itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::LevelSetMotionRegistrationFunction | ( | const Self & | ) | [private] |
virtual TimeStepType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::ComputeGlobalTimeStep | ( | void * | GlobalData | ) | const [virtual] |
Compute the time step that can taken for this iterations. In this context, the timestep is a function of the maximum gradients.
Implements itk::FiniteDifferenceFunction< TDisplacementField >.
virtual PixelType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::ComputeUpdate | ( | const NeighborhoodType & | neighborhood, |
void * | globalData, | ||
const FloatOffsetType & | offset = FloatOffsetType(0.0) |
||
) | [virtual] |
This method is called by a finite difference solver image filter at each pixel that does not lie on a data set boundary
Implements itk::FiniteDifferenceFunction< TDisplacementField >.
virtual::itk::LightObject::Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::CreateAnother | ( | void | ) | const [virtual] |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::LightObject.
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GetAlpha | ( | ) | const [virtual] |
virtual void* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GetGlobalDataPointer | ( | ) | const [inline, virtual] |
Return a pointer to a global data structure that is passed to this object from the solver at each calculation.
Implements itk::FiniteDifferenceFunction< TDisplacementField >.
Definition at line 139 of file itkLevelSetMotionRegistrationFunction.h.
References itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GlobalDataStruct::m_MaxL1Norm, itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GlobalDataStruct::m_NumberOfPixelsProcessed, itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GlobalDataStruct::m_SumOfSquaredChange, and itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GlobalDataStruct::m_SumOfSquaredDifference.
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GetGradientMagnitudeThreshold | ( | ) | const [virtual] |
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GetGradientSmoothingStandardDeviations | ( | ) | const [virtual] |
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GetIntensityDifferenceThreshold | ( | ) | const [virtual] |
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GetMetric | ( | ) | const [inline, virtual] |
Get the metric value. The metric value is the mean square difference in intensity between the fixed image and transforming moving image computed over the the overlapping region between the two images.
Definition at line 166 of file itkLevelSetMotionRegistrationFunction.h.
InterpolatorType* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GetMovingImageInterpolator | ( | void | ) | [inline] |
Get the moving image interpolator.
Definition at line 130 of file itkLevelSetMotionRegistrationFunction.h.
virtual const char* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GetNameOfClass | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GetRMSChange | ( | ) | const [inline, virtual] |
Get the rms change in deformation field.
Definition at line 170 of file itkLevelSetMotionRegistrationFunction.h.
bool itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GetUseImageSpacing | ( | ) | const |
virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::InitializeIteration | ( | ) | [virtual] |
Set the object's state before each iteration.
Reimplemented from itk::FiniteDifferenceFunction< TDisplacementField >.
static Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::New | ( | ) | [static] |
Method for creation through the object factory.
Reimplemented from itk::LightObject.
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::operator= | ( | const Self & | ) | [private] |
Mutex lock to protect modification to the reference count
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::PrintSelf | ( | std::ostream & | os, |
Indent | indent | ||
) | const [protected, virtual] |
Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::ReleaseGlobalDataPointer | ( | void * | GlobalData | ) | const [virtual] |
Release memory for global data structure.
Implements itk::FiniteDifferenceFunction< TDisplacementField >.
virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::SetAlpha | ( | double | ) | [virtual] |
Set/Get the parameter alpha. Alpha is added to the calculated gradient magnitude prior to normalizing the gradient to protect against numerical instability as the gradient magnitude approaches zero. This should be set as a small fraction of the intensity dynamic range, for instance 0.04%. Default is the absolute (not percentage) value of 0.1.
virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::SetGradientMagnitudeThreshold | ( | double | ) | [virtual] |
Set/Get the threshold below which the gradient magnitude is considered the zero vector. Default is 1e-9.
virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::SetGradientSmoothingStandardDeviations | ( | double | ) | [virtual] |
Set/Get the standard deviation used for smoothing the moving image prior to calculating gradients.
virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::SetIntensityDifferenceThreshold | ( | double | ) | [virtual] |
Set/Get the threshold below which the absolute difference of intensity yields a match. When the intensities match between a moving and fixed image pixel, the update vector (for that iteration) will be the zero vector. Default is 0.001.
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::SetMovingImageInterpolator | ( | InterpolatorType * | ptr | ) | [inline] |
Set the moving image interpolator.
Definition at line 126 of file itkLevelSetMotionRegistrationFunction.h.
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::SetUseImageSpacing | ( | bool | ) |
Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacing ON, due to a backward compatibility state.
const unsigned int itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::ImageDimension = Superclass::ImageDimension [static] |
Inherit some enums from the superclass.
Reimplemented from itk::FiniteDifferenceFunction< TDisplacementField >.
Definition at line 96 of file itkLevelSetMotionRegistrationFunction.h.
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_Alpha [private] |
Stabilization factor for normalizing gradients to protect against small gradient magnitudes
Definition at line 245 of file itkLevelSetMotionRegistrationFunction.h.
PointType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_FixedImageOrigin [private] |
Definition at line 234 of file itkLevelSetMotionRegistrationFunction.h.
SpacingType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_FixedImageSpacing [private] |
Cache fixed image information.
Definition at line 233 of file itkLevelSetMotionRegistrationFunction.h.
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_GradientMagnitudeThreshold [private] |
Threshold below which the gradient is considered zero.
Definition at line 248 of file itkLevelSetMotionRegistrationFunction.h.
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_GradientSmoothingStandardDeviations [private] |
Smoothing parameter for gradient calculation
Definition at line 254 of file itkLevelSetMotionRegistrationFunction.h.
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_IntensityDifferenceThreshold [private] |
Threshold below which two intensity value are assumed to match.
Definition at line 251 of file itkLevelSetMotionRegistrationFunction.h.
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_Metric [mutable, private] |
The metric value is the mean square difference in intensity between the fixed image and transforming moving image computed over the the overlapping region between the two images.
Definition at line 259 of file itkLevelSetMotionRegistrationFunction.h.
SimpleFastMutexLock itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_MetricCalculationLock [mutable, private] |
Mutex lock to protect modification to metric.
Definition at line 266 of file itkLevelSetMotionRegistrationFunction.h.
InterpolatorPointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_MovingImageInterpolator [private] |
Function to interpolate the moving image.
Definition at line 240 of file itkLevelSetMotionRegistrationFunction.h.
MovingImageSmoothingFilterPointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_MovingImageSmoothingFilter [private] |
Function to compute derivatives of the moving image.
Definition at line 237 of file itkLevelSetMotionRegistrationFunction.h.
SizeValueType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_NumberOfPixelsProcessed [mutable, private] |
Definition at line 261 of file itkLevelSetMotionRegistrationFunction.h.
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_RMSChange [mutable, private] |
Definition at line 262 of file itkLevelSetMotionRegistrationFunction.h.
InterpolatorPointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_SmoothMovingImageInterpolator [private] |
Definition at line 241 of file itkLevelSetMotionRegistrationFunction.h.
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_SumOfSquaredChange [mutable, private] |
Definition at line 263 of file itkLevelSetMotionRegistrationFunction.h.
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_SumOfSquaredDifference [mutable, private] |
Definition at line 260 of file itkLevelSetMotionRegistrationFunction.h.
bool itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::m_UseImageSpacing [private] |
Definition at line 268 of file itkLevelSetMotionRegistrationFunction.h.