ITK
4.1.0
Insight Segmentation and Registration Toolkit
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#include <itkMINC2ImageIO.h>
Public Types | |
typedef Matrix< float, 3, 3 > | MatrixType |
typedef SmartPointer< Self > | Pointer |
typedef MINC2ImageIO | Self |
typedef ImageIOBase | Superclass |
Public Member Functions | |
virtual bool | CanReadFile (const char *) |
virtual bool | CanWriteFile (const char *) |
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
char * | GetDimensionOrder () |
virtual const char * | GetNameOfClass () const |
virtual void | Read (void *buffer) |
virtual void | ReadImageInformation () |
void | SetDimensionOrder (char *dimorder) |
virtual void | Write (const void *buffer) |
virtual void | WriteImageInformation () |
void | XYZFromDirectionCosines (midimhandle_t *hdims, int *dim_indices, unsigned int *number_of_components) |
Static Public Member Functions | |
static Pointer | New () |
Protected Member Functions | |
int | CheckDimensionOrder (char *userdimorder) |
virtual char * | GetDimensionName (unsigned int i) |
MINC2ImageIO () | |
void | PrintSelf (std::ostream &os, Indent indent) const |
virtual void | SetDimensionName (unsigned int i, char *name) |
void | WriteSlice (std::string &fileName, const void *buffer) |
~MINC2ImageIO () | |
Protected Attributes | |
int | m_Complex |
int * | m_DimensionIndices |
char ** | m_DimensionName |
char * | m_DimensionOrder |
unsigned int * | m_DimensionSize |
double * | m_DimensionStart |
double * | m_DimensionStep |
MatrixType | m_DirectionCosines |
unsigned int | m_NDims |
double | m_OriginalStart [3] |
double | m_Scale |
double | m_Shift |
Private Member Functions | |
MINC2ImageIO (const Self &) | |
void | operator= (const Self &) |
void | SetSliceScalingFromGlobalScaling (mihandle_t volume) |
void | SetSliceScalingFromLocalScaling (mihandle_t volume) |
Class that defines how to read MINC2 file format. Note,like ITK, MINC2 is N dimensional and dimensions can be submitted in any arbitrary order. Here we make sure the dimensions are ordered as xspace, yspace, zspace, time and vector_dimension and so on or xfrequencey, yfrequency, zfrequency, tfrequency and vector_dimension and so on NOTE** This class only reads the regularly sampled dimensions as I am not sure how to deal with "iregularly sampled" dimensions yet!
Definition at line 61 of file itkMINC2ImageIO.h.
typedef Matrix< float, 3, 3 > itk::MINC2ImageIO::MatrixType |
Definition at line 68 of file itkMINC2ImageIO.h.
typedef SmartPointer< Self > itk::MINC2ImageIO::Pointer |
Reimplemented from itk::ImageIOBase.
Definition at line 67 of file itkMINC2ImageIO.h.
typedef MINC2ImageIO itk::MINC2ImageIO::Self |
Standard class typedefs.
Reimplemented from itk::ImageIOBase.
Definition at line 65 of file itkMINC2ImageIO.h.
Reimplemented from itk::ImageIOBase.
Definition at line 66 of file itkMINC2ImageIO.h.
itk::MINC2ImageIO::MINC2ImageIO | ( | ) | [protected] |
itk::MINC2ImageIO::~MINC2ImageIO | ( | ) | [protected] |
itk::MINC2ImageIO::MINC2ImageIO | ( | const Self & | ) | [private] |
virtual bool itk::MINC2ImageIO::CanReadFile | ( | const char * | ) | [virtual] |
Determine the file type. Returns true if this ImageIO can read the file specified.
Implements itk::ImageIOBase.
virtual bool itk::MINC2ImageIO::CanWriteFile | ( | const char * | ) | [virtual] |
Determine the file type. Returns true if this ImageIO can read the file specified.
Implements itk::ImageIOBase.
int itk::MINC2ImageIO::CheckDimensionOrder | ( | char * | userdimorder | ) | [protected] |
virtual::itk::LightObject::Pointer itk::MINC2ImageIO::CreateAnother | ( | void | ) | const [virtual] |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::LightProcessObject.
virtual char* itk::MINC2ImageIO::GetDimensionName | ( | unsigned int | i | ) | [inline, protected, virtual] |
Definition at line 121 of file itkMINC2ImageIO.h.
char* itk::MINC2ImageIO::GetDimensionOrder | ( | ) | [inline] |
Definition at line 102 of file itkMINC2ImageIO.h.
virtual const char* itk::MINC2ImageIO::GetNameOfClass | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from itk::ImageIOBase.
static Pointer itk::MINC2ImageIO::New | ( | ) | [static] |
Method for creation through the object factory.
Reimplemented from itk::LightProcessObject.
void itk::MINC2ImageIO::operator= | ( | const Self & | ) | [private] |
This method causes the filter to generate its output.
Reimplemented from itk::ImageIOBase.
void itk::MINC2ImageIO::PrintSelf | ( | std::ostream & | os, |
Indent | indent | ||
) | const [protected, virtual] |
Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::ImageIOBase.
virtual void itk::MINC2ImageIO::Read | ( | void * | buffer | ) | [virtual] |
Reads the data from disk into the memory buffer provided.
Implements itk::ImageIOBase.
virtual void itk::MINC2ImageIO::ReadImageInformation | ( | ) | [virtual] |
Set the spacing and dimension information for the set filename.
Implements itk::ImageIOBase.
virtual void itk::MINC2ImageIO::SetDimensionName | ( | unsigned int | i, |
char * | name | ||
) | [protected, virtual] |
void itk::MINC2ImageIO::SetDimensionOrder | ( | char * | dimorder | ) | [inline] |
Definition at line 103 of file itkMINC2ImageIO.h.
void itk::MINC2ImageIO::SetSliceScalingFromGlobalScaling | ( | mihandle_t | volume | ) | [private] |
void itk::MINC2ImageIO::SetSliceScalingFromLocalScaling | ( | mihandle_t | volume | ) | [private] |
virtual void itk::MINC2ImageIO::Write | ( | const void * | buffer | ) | [virtual] |
Writes the data to disk from the memory buffer provided. Make sure that the IORegion has been set properly.
Implements itk::ImageIOBase.
virtual void itk::MINC2ImageIO::WriteImageInformation | ( | ) | [virtual] |
Writes the spacing and dimentions of the image. Assumes SetFileName has been called with a valid file name.
Implements itk::ImageIOBase.
void itk::MINC2ImageIO::WriteSlice | ( | std::string & | fileName, |
const void * | buffer | ||
) | [protected] |
void itk::MINC2ImageIO::XYZFromDirectionCosines | ( | midimhandle_t * | hdims, |
int * | dim_indices, | ||
unsigned int * | number_of_components | ||
) |
int itk::MINC2ImageIO::m_Complex [protected] |
Definition at line 146 of file itkMINC2ImageIO.h.
int* itk::MINC2ImageIO::m_DimensionIndices [protected] |
Definition at line 136 of file itkMINC2ImageIO.h.
char** itk::MINC2ImageIO::m_DimensionName [protected] |
Definition at line 118 of file itkMINC2ImageIO.h.
char* itk::MINC2ImageIO::m_DimensionOrder [protected] |
Definition at line 123 of file itkMINC2ImageIO.h.
unsigned int* itk::MINC2ImageIO::m_DimensionSize [protected] |
Definition at line 130 of file itkMINC2ImageIO.h.
double* itk::MINC2ImageIO::m_DimensionStart [protected] |
Definition at line 131 of file itkMINC2ImageIO.h.
double* itk::MINC2ImageIO::m_DimensionStep [protected] |
Definition at line 132 of file itkMINC2ImageIO.h.
MatrixType itk::MINC2ImageIO::m_DirectionCosines [protected] |
Definition at line 134 of file itkMINC2ImageIO.h.
unsigned int itk::MINC2ImageIO::m_NDims [protected] |
Definition at line 116 of file itkMINC2ImageIO.h.
double itk::MINC2ImageIO::m_OriginalStart[3] [protected] |
Definition at line 144 of file itkMINC2ImageIO.h.
double itk::MINC2ImageIO::m_Scale [protected] |
Definition at line 127 of file itkMINC2ImageIO.h.
double itk::MINC2ImageIO::m_Shift [protected] |
Definition at line 126 of file itkMINC2ImageIO.h.