ITK
4.1.0
Insight Segmentation and Registration Toolkit
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#include <itkTestingExtractSliceImageFilter.h>
Decrease the image size by cropping the image to the selected region bounds.
ExtractSliceImageFilter changes the image boundary of an image by removing pixels outside the target region. The target region must be specified.
ExtractSliceImageFilter also collapses dimensions so that the input image may have more dimensions than the output image (i.e. 4-D input image to a 3-D output image). To specify what dimensions to collapse, the ExtractionRegion must be specified. For any dimension dim where ExtractionRegion.Size[dim] = 0, that dimension is collapsed. The index to collapse on is specified by ExtractionRegion.Index[dim]. For example, we have a image 4D = a 4x4x4x4 image, and we want to get a 3D image, 3D = a 4x4x4 image, specified as [x,y,z,2] from 4D (i.e. the 3rd "time" slice from 4D). The ExtractionRegion.Size = [4,4,4,0] and ExtractionRegion.Index = [0,0,0,2].
The number of dimension in ExtractionRegion.Size and Index must = InputImageDimension. The number of non-zero dimensions in ExtractionRegion.Size must = OutputImageDimension.
The output image produced by this filter will have the same origin as the input image, while the ImageRegion of the output image will start at the starting index value provided in the ExtractRegion parameter. If you are looking for a filter that will re-compute the origin of the output image, and provide an output image region whose index is set to zeros, then you may want to use the RegionOfInterestImageFilter. The output spacing is is simply the collapsed version of the input spacing.
Determining the direction of the collapsed output image from an larger dimensional input space is an ill defined problem in general. It is required that the application developer select the desired transformation strategy for collapsing direction cosigns. It is REQUIRED that a strategy be explicitly requested (i.e. there is no working default). Direction Collapsing Strategies: 1) DirectionCollapseToUnknown(); This is the default and the filter can not run when this is set. The reason is to explicitly force the application developer to define their desired behavior. 1) DirectionCollapseToIdentity(); Output has identity direction no matter what 2) DirectionCollaspeToSubmatrix(); Output direction is the sub-matrix if it is positive definite, else throw an exception.
This filter is implemented as a multithreaded filter. It provides a ThreadedGenerateData() method for its implementation.
Definition at line 82 of file itkTestingExtractSliceImageFilter.h.
typedef SmartPointer< const Self > itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::ConstPointer |
Reimplemented from itk::ImageSource< TOutputImage >.
Definition at line 90 of file itkTestingExtractSliceImageFilter.h.
typedef enum itk::Testing::ExtractSliceImageFilter::DirectionCollaspeStrategyEnum itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::DIRECTIONCOLLAPSESTRATEGY |
typedef ImageToImageFilterDetail::ExtractImageFilterRegionCopier< itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) > itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::ExtractSliceImageFilterRegionCopierType |
Definition at line 207 of file itkTestingExtractSliceImageFilter.h.
typedef TInputImage::IndexType itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::InputImageIndexType |
Definition at line 112 of file itkTestingExtractSliceImageFilter.h.
typedef TInputImage::PixelType itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::InputImagePixelType |
Definition at line 108 of file itkTestingExtractSliceImageFilter.h.
typedef TInputImage::RegionType itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::InputImageRegionType |
Definition at line 104 of file itkTestingExtractSliceImageFilter.h.
typedef TInputImage::SizeType itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::InputImageSizeType |
Definition at line 114 of file itkTestingExtractSliceImageFilter.h.
typedef TInputImage itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::InputImageType |
Image type information.
Definition at line 96 of file itkTestingExtractSliceImageFilter.h.
typedef TOutputImage::IndexType itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::OutputImageIndexType |
Typedef to describe the output and input image index and size types.
Definition at line 111 of file itkTestingExtractSliceImageFilter.h.
typedef TOutputImage::PixelType itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::OutputImagePixelType |
Typedef to describe the type of pixel.
Reimplemented from itk::ImageSource< TOutputImage >.
Definition at line 107 of file itkTestingExtractSliceImageFilter.h.
typedef TOutputImage::RegionType itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::OutputImageRegionType |
Typedef to describe the output and input image region types.
Reimplemented from itk::ImageSource< TOutputImage >.
Definition at line 103 of file itkTestingExtractSliceImageFilter.h.
typedef TOutputImage::SizeType itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::OutputImageSizeType |
Definition at line 113 of file itkTestingExtractSliceImageFilter.h.
typedef TOutputImage itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::OutputImageType |
Some convenient typedefs.
Reimplemented from itk::ImageSource< TOutputImage >.
Definition at line 100 of file itkTestingExtractSliceImageFilter.h.
typedef SmartPointer< Self > itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::Pointer |
Reimplemented from itk::ImageSource< TOutputImage >.
Definition at line 89 of file itkTestingExtractSliceImageFilter.h.
typedef ExtractSliceImageFilter itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::Self |
Standard class typedefs.
Reimplemented from itk::ImageSource< TOutputImage >.
Definition at line 87 of file itkTestingExtractSliceImageFilter.h.
typedef ImageSource< TOutputImage > itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::Superclass |
Reimplemented from itk::ImageSource< TOutputImage >.
Definition at line 88 of file itkTestingExtractSliceImageFilter.h.
enum itk::Testing::ExtractSliceImageFilter::DirectionCollaspeStrategyEnum |
DIRECTIONCOLLAPSETOUNKOWN | |
DIRECTIONCOLLAPSETOIDENTITY | |
DIRECTIONCOLLAPSETOSUBMATRIX | |
DIRECTIONCOLLAPSETOGUESS |
Definition at line 116 of file itkTestingExtractSliceImageFilter.h.
itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::ExtractSliceImageFilter | ( | ) | [protected] |
End concept checking
itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::~ExtractSliceImageFilter | ( | ) | [inline, protected] |
End concept checking
Definition at line 233 of file itkTestingExtractSliceImageFilter.h.
itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::ExtractSliceImageFilter | ( | const Self & | ) | [private] |
virtual void itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::CallCopyOutputRegionToInputRegion | ( | InputImageRegionType & | destRegion, |
const OutputImageRegionType & | srcRegion | ||
) | [protected, virtual] |
This function calls the actual region copier to do the mapping from output image space to input image space. It uses a Function object used for dispatching to various routines to copy an output region (start index and size) to an input region. For most filters, this is a trivial copy because most filters require the input dimension to match the output dimension. However, some filters like itk::ExtractSliceImageFilter can support output images of a lower dimension that the input.
virtual::itk::LightObject::Pointer itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::CreateAnother | ( | void | ) | const [virtual] |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::Object.
virtual void itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::GenerateOutputInformation | ( | ) | [protected, virtual] |
ExtractSliceImageFilter can produce an image which is a different resolution than its input image. As such, ExtractSliceImageFilter needs to provide an implementation for GenerateOutputInformation() in order to inform the pipeline execution model. The original documentation of this method is below.
Reimplemented from itk::ProcessObject.
DIRECTIONCOLLAPSESTRATEGY itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::GetDirectionCollapseToStrategy | ( | ) | const [inline] |
NOTE: The SetDirectionCollapseToUknown is explicitly not defined. It is a state that a filter can be in only when it is first instantiate prior to being initialized. Get the currently set strategy for collapsing directions of physical space.
Definition at line 174 of file itkTestingExtractSliceImageFilter.h.
virtual InputImageRegionType itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::GetExtractionRegion | ( | ) | const [virtual] |
Set/Get the output image region. If any of the ExtractionRegion.Size = 0 for any particular dimension dim, we have to collapse dimension dim. This means the output image will have 'c' dimensions less than the input image, where c = number of ExtractionRegion.Size = 0.
const TInputImage* itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::GetInput | ( | void | ) | const |
virtual const char* itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::GetNameOfClass | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from itk::ImageSource< TOutputImage >.
static Pointer itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::New | ( | ) | [static] |
Method for creation through the object factory.
Reimplemented from itk::Object.
void itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::operator= | ( | const Self & | ) | [private] |
Reimplemented from itk::ImageSource< TOutputImage >.
void itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::PrintSelf | ( | std::ostream & | os, |
Indent | indent | ||
) | const [protected, virtual] |
End concept checking
Reimplemented from itk::ProcessObject.
void itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::SetDirectionCollapseToGuess | ( | ) | [inline] |
Definition at line 180 of file itkTestingExtractSliceImageFilter.h.
void itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::SetDirectionCollapseToIdentity | ( | ) | [inline] |
Definition at line 186 of file itkTestingExtractSliceImageFilter.h.
void itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::SetDirectionCollapseToStrategy | ( | const DIRECTIONCOLLAPSESTRATEGY | choosenStrategy | ) | [inline] |
Set the strategy to be used to collapse pysical space dimensions.
itk::itkExtractSliceImageFilter::DIRECTIONCOLLAPSETOIDENTITY Set the strategy so that all collapsed images have an identity direction. Use this strategy when you know that retention of the physical space orientation of the collapsed image is not important.
itk::itkExtractSliceImageFilter::DIRECTIONCOLLAPSETOGUESS Set the strategy so that all collapsed images where output direction is the sub-matrix it it is positive definite, else return identity. This is backwards compatible with ITKv3, but is highly discouraged because the results are difficult to anticipate under differing data scenerios.
itk::itkExtractSliceImageFilter::DIRECTIONCOLLAPSETOSUBMATRIX Set the strategy so that all collapsed images where output direction is the sub-matrix it it is positive definite, else throw an exception. Use this strategy when it is known that properly identified physical space sub-volumes can be reliably extracted from a higher dimensional space. For example when the applicaiton programmer knows that a 4D image is 3D+time, and that the 3D sub-space is properly defined.
Definition at line 148 of file itkTestingExtractSliceImageFilter.h.
void itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::SetDirectionCollapseToSubmatrix | ( | ) | [inline] |
Definition at line 192 of file itkTestingExtractSliceImageFilter.h.
void itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::SetExtractionRegion | ( | InputImageRegionType | extractRegion | ) |
Set/Get the output image region. If any of the ExtractionRegion.Size = 0 for any particular dimension dim, we have to collapse dimension dim. This means the output image will have 'c' dimensions less than the input image, where c = number of ExtractionRegion.Size = 0.
virtual void itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::SetInput | ( | const TInputImage * | image | ) | [virtual] |
void itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::ThreadedGenerateData | ( | const OutputImageRegionType & | outputRegionForThread, |
ThreadIdType | threadId | ||
) | [protected, virtual] |
ExtractSliceImageFilter can be implemented as a multithreaded filter. Therefore, this implementation provides a ThreadedGenerateData() routine which is called for each processing thread. The output image data is allocated automatically by the superclass prior to calling ThreadedGenerateData(). ThreadedGenerateData can only write to the portion of the output image specified by the parameter "outputRegionForThread"
Reimplemented from itk::ImageSource< TOutputImage >.
itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::typedef | ( | Concept::Convertible< InputImagePixelType, OutputImagePixelType > | ) |
Begin concept checking This class requires InputCovertibleToOutputCheck in the form of ( Concept::Convertible< InputImagePixelType, OutputImagePixelType > )
const unsigned int itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::InputImageDimension = TInputImage::ImageDimension [static] |
ImageDimension enumeration
Definition at line 200 of file itkTestingExtractSliceImageFilter.h.
DIRECTIONCOLLAPSESTRATEGY itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::m_DirectionCollaspeStrategy [private] |
Definition at line 277 of file itkTestingExtractSliceImageFilter.h.
InputImageRegionType itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::m_ExtractionRegion [protected] |
Definition at line 270 of file itkTestingExtractSliceImageFilter.h.
OutputImageRegionType itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::m_OutputImageRegion [protected] |
Definition at line 272 of file itkTestingExtractSliceImageFilter.h.
const unsigned int itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::OutputImageDimension = TOutputImage::ImageDimension [static] |
ImageDimension enumeration
Reimplemented from itk::ImageSource< TOutputImage >.
Definition at line 202 of file itkTestingExtractSliceImageFilter.h.