ITK  4.1.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Private Attributes
itk::bio::CellularAggregate< NSpaceDimension > Class Template Reference

#include <itkBioCellularAggregate.h>

+ Inheritance diagram for itk::bio::CellularAggregate< NSpaceDimension >:
+ Collaboration diagram for itk::bio::CellularAggregate< NSpaceDimension >:

List of all members.

Public Types

typedef Cell< NSpaceDimension > BioCellType
typedef MeshType::CellAutoPointer CellAutoPointer
typedef CellInterface
< typename
MeshType::CellPixelType,
typename MeshType::CellTraits
CellInterfaceType
typedef double CellPixelType
typedef
PointDataContainer::ConstIterator 
CellsConstIterator
typedef
PointDataContainer::Iterator 
CellsIterator
typedef SmartPointer< const SelfConstPointer
typedef float ImagePixelType
typedef MeshType::ConstPointer MeshConstPointer
typedef MeshType::Pointer MeshPointer
typedef
DefaultDynamicMeshTraits
< PointPixelType,
NSpaceDimension,
NSpaceDimension, double,
double, CellPixelType
MeshTraits
typedef Mesh< PointPixelType,
NSpaceDimension, MeshTraits
MeshType
typedef
MeshType::PointDataContainer 
PointDataContainer
typedef SmartPointer< SelfPointer
typedef BioCellTypePointPixelType
typedef
PointsContainer::ConstIterator 
PointsConstIterator
typedef MeshType::PointsContainer PointsContainer
typedef PointsContainer::Iterator PointsIterator
typedef MeshType::PointType PointType
typedef CellularAggregate Self
typedef SubstrateType::Pointer SubstratePointer
typedef std::vector
< SubstratePointer
SubstratesVector
typedef Image< ImagePixelType,
NSpaceDimension > 
SubstrateType
typedef ImagePixelType SubstrateValueType
typedef CellularAggregateBase Superclass
typedef BioCellType::VectorType VectorType
typedef
VoronoiRegionsContainer::ConstIterator 
VoronoiConstIterator
typedef
VoronoiRegionsContainer::Iterator 
VoronoiIterator
typedef
VoronoiRegionType::SelfAutoPointer 
VoronoiRegionAutoPointer
typedef MeshType::CellsContainer VoronoiRegionsContainer
typedef PolygonCell
< CellInterfaceType
VoronoiRegionType

Public Member Functions

virtual void Add (CellBase *cell)
virtual void Add (CellBase *cell, const VectorType &perturbation)
virtual void Add (CellBase *cellA, CellBase *cellB, double perturbationLength)
virtual void AddSubstrate (SubstrateType *substrate)
virtual void AdvanceTimeStep (void)
virtual ::itk::LightObject::Pointer CreateAnother (void) const
void DumpContent (std::ostream &os) const
virtual MeshTypeGetMesh ()
virtual const MeshTypeGetMesh ()
virtual const char * GetNameOfClass () const
unsigned int GetNumberOfCells (void) const
virtual SubstratesVectorGetSubstrates (void)
virtual SubstrateValueType GetSubstrateValue (IdentifierType cellId, unsigned int substrateId) const
virtual void GetVoronoi (IdentifierType cellId, VoronoiRegionAutoPointer &) const
virtual void KillAll (void)
virtual void Remove (CellBase *cell)
virtual void SetEgg (BioCellType *cell, const PointType &position)
void SetGrowthRadiusIncrement (double value)
void SetGrowthRadiusLimit (double value)

Static Public Member Functions

static unsigned int GetDimension ()
static Pointer New ()

Static Public Attributes

static const unsigned int SpaceDimension = NSpaceDimension

Protected Member Functions

 CellularAggregate ()
 CellularAggregate (const Self &)
virtual void ClearForces (void)
virtual void ComputeClosestPoints (void)
virtual void ComputeForces (void)
void operator= (const Self &)
void PrintSelf (std::ostream &os, Indent indent) const
virtual void UpdatePositions (void)
virtual ~CellularAggregate ()

Private Attributes

SizeValueType m_ClosestPointComputationInterval
double m_FrictionForce
SizeValueType m_Iteration
MeshPointer m_Mesh
SubstratesVector m_Substrates

Detailed Description

template<unsigned int NSpaceDimension = 3>
class itk::bio::CellularAggregate< NSpaceDimension >

Base class for different types of cellular groups, including bacterial colonies and pluricellular organisms.

This class represents an aggregation of bio::Cell objects.

Definition at line 43 of file itkBioCellularAggregate.h.


Member Typedef Documentation

template<unsigned int NSpaceDimension = 3>
typedef Cell< NSpaceDimension > itk::bio::CellularAggregate< NSpaceDimension >::BioCellType

Definition at line 61 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::CellAutoPointer itk::bio::CellularAggregate< NSpaceDimension >::CellAutoPointer

Definition at line 95 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef CellInterface< typename MeshType::CellPixelType, typename MeshType::CellTraits > itk::bio::CellularAggregate< NSpaceDimension >::CellInterfaceType

Voronoi region around a bio::Cell

Definition at line 100 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef double itk::bio::CellularAggregate< NSpaceDimension >::CellPixelType

Definition at line 63 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef PointDataContainer::ConstIterator itk::bio::CellularAggregate< NSpaceDimension >::CellsConstIterator

Definition at line 93 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef PointDataContainer::Iterator itk::bio::CellularAggregate< NSpaceDimension >::CellsIterator

Definition at line 90 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef SmartPointer< const Self > itk::bio::CellularAggregate< NSpaceDimension >::ConstPointer

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 50 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef float itk::bio::CellularAggregate< NSpaceDimension >::ImagePixelType

Convenient typedefs.

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 106 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::ConstPointer itk::bio::CellularAggregate< NSpaceDimension >::MeshConstPointer

Definition at line 82 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::Pointer itk::bio::CellularAggregate< NSpaceDimension >::MeshPointer

Mesh Associated types

Definition at line 81 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef DefaultDynamicMeshTraits< PointPixelType, NSpaceDimension, NSpaceDimension, double, double, CellPixelType > itk::bio::CellularAggregate< NSpaceDimension >::MeshTraits

Mesh Traits

Definition at line 73 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef Mesh< PointPixelType, NSpaceDimension, MeshTraits > itk::bio::CellularAggregate< NSpaceDimension >::MeshType

Mesh Traits

Definition at line 78 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::PointDataContainer itk::bio::CellularAggregate< NSpaceDimension >::PointDataContainer

Definition at line 87 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef SmartPointer< Self > itk::bio::CellularAggregate< NSpaceDimension >::Pointer

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 49 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef BioCellType* itk::bio::CellularAggregate< NSpaceDimension >::PointPixelType

Definition at line 62 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef PointsContainer::ConstIterator itk::bio::CellularAggregate< NSpaceDimension >::PointsConstIterator

Definition at line 92 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::PointsContainer itk::bio::CellularAggregate< NSpaceDimension >::PointsContainer

Definition at line 86 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef PointsContainer::Iterator itk::bio::CellularAggregate< NSpaceDimension >::PointsIterator

Definition at line 89 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::PointType itk::bio::CellularAggregate< NSpaceDimension >::PointType

Definition at line 83 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef CellularAggregate itk::bio::CellularAggregate< NSpaceDimension >::Self

Standard class typedefs.

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 47 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef SubstrateType::Pointer itk::bio::CellularAggregate< NSpaceDimension >::SubstratePointer

Definition at line 108 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef std::vector< SubstratePointer > itk::bio::CellularAggregate< NSpaceDimension >::SubstratesVector

Definition at line 110 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef Image< ImagePixelType, NSpaceDimension > itk::bio::CellularAggregate< NSpaceDimension >::SubstrateType

Definition at line 107 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef ImagePixelType itk::bio::CellularAggregate< NSpaceDimension >::SubstrateValueType

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 109 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef CellularAggregateBase itk::bio::CellularAggregate< NSpaceDimension >::Superclass

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 48 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef BioCellType::VectorType itk::bio::CellularAggregate< NSpaceDimension >::VectorType

Definition at line 84 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef VoronoiRegionsContainer::ConstIterator itk::bio::CellularAggregate< NSpaceDimension >::VoronoiConstIterator

Definition at line 94 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef VoronoiRegionsContainer::Iterator itk::bio::CellularAggregate< NSpaceDimension >::VoronoiIterator

Definition at line 91 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef VoronoiRegionType::SelfAutoPointer itk::bio::CellularAggregate< NSpaceDimension >::VoronoiRegionAutoPointer

Definition at line 103 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::CellsContainer itk::bio::CellularAggregate< NSpaceDimension >::VoronoiRegionsContainer

Definition at line 88 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef PolygonCell< CellInterfaceType > itk::bio::CellularAggregate< NSpaceDimension >::VoronoiRegionType

Definition at line 102 of file itkBioCellularAggregate.h.


Constructor & Destructor Documentation

template<unsigned int NSpaceDimension = 3>
itk::bio::CellularAggregate< NSpaceDimension >::CellularAggregate ( ) [protected]
template<unsigned int NSpaceDimension = 3>
virtual itk::bio::CellularAggregate< NSpaceDimension >::~CellularAggregate ( ) [protected, virtual]
template<unsigned int NSpaceDimension = 3>
itk::bio::CellularAggregate< NSpaceDimension >::CellularAggregate ( const Self ) [protected]

Member Function Documentation

template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::Add ( CellBase cell) [virtual]
template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::Add ( CellBase cell,
const VectorType perturbation 
) [virtual]
template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::Add ( CellBase cellA,
CellBase cellB,
double  perturbationLength 
) [virtual]

Reimplemented from itk::bio::CellularAggregateBase.

template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::AddSubstrate ( SubstrateType substrate) [virtual]
template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::AdvanceTimeStep ( void  ) [virtual]
template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::ClearForces ( void  ) [protected, virtual]
template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::ComputeClosestPoints ( void  ) [protected, virtual]
template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::ComputeForces ( void  ) [protected, virtual]
template<unsigned int NSpaceDimension = 3>
virtual::itk::LightObject::Pointer itk::bio::CellularAggregate< NSpaceDimension >::CreateAnother ( void  ) const [virtual]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::bio::CellularAggregateBase.

template<unsigned int NSpaceDimension = 3>
void itk::bio::CellularAggregate< NSpaceDimension >::DumpContent ( std::ostream &  os) const
template<unsigned int NSpaceDimension = 3>
static unsigned int itk::bio::CellularAggregate< NSpaceDimension >::GetDimension ( void  ) [inline, static]

Definition at line 114 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
virtual MeshType* itk::bio::CellularAggregate< NSpaceDimension >::GetMesh ( ) [virtual]
template<unsigned int NSpaceDimension = 3>
virtual const MeshType* itk::bio::CellularAggregate< NSpaceDimension >::GetMesh ( ) [virtual]
template<unsigned int NSpaceDimension = 3>
virtual const char* itk::bio::CellularAggregate< NSpaceDimension >::GetNameOfClass ( ) const [virtual]

Standard part of all itk objects.

Reimplemented from itk::bio::CellularAggregateBase.

template<unsigned int NSpaceDimension = 3>
unsigned int itk::bio::CellularAggregate< NSpaceDimension >::GetNumberOfCells ( void  ) const
template<unsigned int NSpaceDimension = 3>
virtual SubstratesVector& itk::bio::CellularAggregate< NSpaceDimension >::GetSubstrates ( void  ) [virtual]
template<unsigned int NSpaceDimension = 3>
virtual SubstrateValueType itk::bio::CellularAggregate< NSpaceDimension >::GetSubstrateValue ( IdentifierType  cellId,
unsigned int  substrateId 
) const [virtual]

Reimplemented from itk::bio::CellularAggregateBase.

template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::GetVoronoi ( IdentifierType  cellId,
VoronoiRegionAutoPointer  
) const [virtual]
template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::KillAll ( void  ) [virtual]
template<unsigned int NSpaceDimension = 3>
static Pointer itk::bio::CellularAggregate< NSpaceDimension >::New ( ) [static]

Method for creation through the object factory.

Reimplemented from itk::bio::CellularAggregateBase.

template<unsigned int NSpaceDimension = 3>
void itk::bio::CellularAggregate< NSpaceDimension >::operator= ( const Self ) [protected]

Mutex lock to protect modification to the reference count

Reimplemented from itk::Object.

template<unsigned int NSpaceDimension = 3>
void itk::bio::CellularAggregate< NSpaceDimension >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const [protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::bio::CellularAggregateBase.

template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::Remove ( CellBase cell) [virtual]

Reimplemented from itk::bio::CellularAggregateBase.

template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::SetEgg ( BioCellType cell,
const PointType position 
) [virtual]
template<unsigned int NSpaceDimension = 3>
void itk::bio::CellularAggregate< NSpaceDimension >::SetGrowthRadiusIncrement ( double  value)
template<unsigned int NSpaceDimension = 3>
void itk::bio::CellularAggregate< NSpaceDimension >::SetGrowthRadiusLimit ( double  value)
template<unsigned int NSpaceDimension = 3>
virtual void itk::bio::CellularAggregate< NSpaceDimension >::UpdatePositions ( void  ) [protected, virtual]

Member Data Documentation

template<unsigned int NSpaceDimension = 3>
SizeValueType itk::bio::CellularAggregate< NSpaceDimension >::m_ClosestPointComputationInterval [private]

Definition at line 170 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
double itk::bio::CellularAggregate< NSpaceDimension >::m_FrictionForce [private]

Definition at line 168 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
SizeValueType itk::bio::CellularAggregate< NSpaceDimension >::m_Iteration [private]

Definition at line 169 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
MeshPointer itk::bio::CellularAggregate< NSpaceDimension >::m_Mesh [private]

Definition at line 166 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
SubstratesVector itk::bio::CellularAggregate< NSpaceDimension >::m_Substrates [private]

Definition at line 167 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
const unsigned int itk::bio::CellularAggregate< NSpaceDimension >::SpaceDimension = NSpaceDimension [static]

Definition at line 58 of file itkBioCellularAggregate.h.


The documentation for this class was generated from the following file: