ITK
4.10.0
Insight Segmentation and Registration Toolkit
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#include <itkLabelOverlapMeasuresImageFilter.h>
Computes overlap measures between the set same set of labels of pixels of two images. Background is assumed to be 0.
This code was contributed in the Insight Journal paper: "Introducing Dice, Jaccard, and Other Label Overlap Measures To ITK" by Nicholas J. Tustison, James C. Gee https://hdl.handle.net/10380/3141 http://www.insight-journal.org/browse/publication/707
Definition at line 45 of file itkLabelOverlapMeasuresImageFilter.h.
Classes | |
class | LabelSetMeasures |
Public Types | |
typedef SmartPointer< const Self > | ConstPointer |
typedef TLabelImage::IndexType | IndexType |
typedef TLabelImage::ConstPointer | LabelImageConstPointer |
typedef TLabelImage::Pointer | LabelImagePointer |
typedef TLabelImage | LabelImageType |
typedef TLabelImage::PixelType | LabelType |
typedef MapType::const_iterator | MapConstIterator |
typedef MapType::iterator | MapIterator |
typedef itksys::hash_map< LabelType, LabelSetMeasures > | MapType |
typedef SmartPointer< Self > | Pointer |
typedef NumericTraits< LabelType >::RealType | RealType |
typedef TLabelImage::RegionType | RegionType |
typedef LabelOverlapMeasuresImageFilter | Self |
typedef TLabelImage::SizeType | SizeType |
typedef ImageToImageFilter< TLabelImage, TLabelImage > | Superclass |
Public Types inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef InputImageType::ConstPointer | InputImageConstPointer |
typedef InputImageType::PixelType | InputImagePixelType |
typedef InputImageType::Pointer | InputImagePointer |
typedef InputImageType::RegionType | InputImageRegionType |
typedef TLabelImage | InputImageType |
typedef Superclass::OutputImagePixelType | OutputImagePixelType |
typedef Superclass::OutputImageRegionType | OutputImageRegionType |
typedef SmartPointer< Self > | Pointer |
typedef ImageToImageFilter | Self |
typedef ImageSource< TLabelImage > | Superclass |
Public Types inherited from itk::ImageSource< TLabelImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef Superclass::DataObjectIdentifierType | DataObjectIdentifierType |
typedef DataObject::Pointer | DataObjectPointer |
typedef Superclass::DataObjectPointerArraySizeType | DataObjectPointerArraySizeType |
typedef OutputImageType::PixelType | OutputImagePixelType |
typedef OutputImageType::Pointer | OutputImagePointer |
typedef OutputImageType::RegionType | OutputImageRegionType |
typedef TLabelImage | OutputImageType |
typedef SmartPointer< Self > | Pointer |
typedef ImageSource | Self |
typedef ProcessObject | Superclass |
Public Types inherited from itk::ProcessObject | |
typedef SmartPointer< const Self > | ConstPointer |
typedef DataObject::DataObjectIdentifierType | DataObjectIdentifierType |
typedef DataObject::Pointer | DataObjectPointer |
typedef std::vector< DataObjectPointer > | DataObjectPointerArray |
typedef DataObjectPointerArray::size_type | DataObjectPointerArraySizeType |
typedef std::vector< DataObjectIdentifierType > | NameArray |
typedef SmartPointer< Self > | Pointer |
typedef ProcessObject | Self |
typedef Object | Superclass |
Public Types inherited from itk::Object | |
typedef SmartPointer< const Self > | ConstPointer |
typedef SmartPointer< Self > | Pointer |
typedef Object | Self |
typedef LightObject | Superclass |
Public Types inherited from itk::LightObject | |
typedef SmartPointer< const Self > | ConstPointer |
typedef SmartPointer< Self > | Pointer |
typedef LightObject | Self |
Static Public Member Functions | |
static Pointer | New () |
Static Public Member Functions inherited from itk::Object | |
static bool | GetGlobalWarningDisplay () |
static void | GlobalWarningDisplayOff () |
static void | GlobalWarningDisplayOn () |
static Pointer | New () |
static void | SetGlobalWarningDisplay (bool flag) |
Static Public Member Functions inherited from itk::LightObject | |
static void | BreakOnError () |
static Pointer | New () |
Static Public Attributes | |
static const unsigned int | ImageDimension = TLabelImage::ImageDimension |
Static Public Attributes inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage > | |
static const unsigned int | InputImageDimension |
static const unsigned int | OutputImageDimension |
Static Public Attributes inherited from itk::ImageSource< TLabelImage > | |
static const unsigned int | OutputImageDimension |
Private Member Functions | |
LabelOverlapMeasuresImageFilter (const Self &) ITK_DELETE_FUNCTION | |
void | operator= (const Self &) ITK_DELETE_FUNCTION |
Private Attributes | |
MapType | m_LabelSetMeasures |
std::vector< MapType > | m_LabelSetMeasuresPerThread |
Additional Inherited Members | |
Protected Types inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage > | |
typedef ImageToImageFilterDetail::ImageRegionCopier< itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) > | InputToOutputRegionCopierType |
typedef ImageToImageFilterDetail::ImageRegionCopier< itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) > | OutputToInputRegionCopierType |
Static Protected Member Functions inherited from itk::ImageSource< TLabelImage > | |
static const ImageRegionSplitterBase * | GetGlobalDefaultSplitter () |
static ITK_THREAD_RETURN_TYPE | ThreaderCallback (void *arg) |
Protected Attributes inherited from itk::ProcessObject | |
TimeStamp | m_OutputInformationMTime |
bool | m_Updating |
Protected Attributes inherited from itk::LightObject | |
AtomicInt< int > | m_ReferenceCount |
typedef SmartPointer<const Self> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::ConstPointer |
Definition at line 53 of file itkLabelOverlapMeasuresImageFilter.h.
typedef TLabelImage::IndexType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::IndexType |
Definition at line 68 of file itkLabelOverlapMeasuresImageFilter.h.
typedef TLabelImage::ConstPointer itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImageConstPointer |
Definition at line 64 of file itkLabelOverlapMeasuresImageFilter.h.
typedef TLabelImage::Pointer itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImagePointer |
Definition at line 63 of file itkLabelOverlapMeasuresImageFilter.h.
typedef TLabelImage itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImageType |
Image related typedefs.
Definition at line 59 of file itkLabelOverlapMeasuresImageFilter.h.
typedef TLabelImage::PixelType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelType |
Definition at line 70 of file itkLabelOverlapMeasuresImageFilter.h.
typedef MapType::const_iterator itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapConstIterator |
Definition at line 119 of file itkLabelOverlapMeasuresImageFilter.h.
typedef MapType::iterator itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapIterator |
Definition at line 118 of file itkLabelOverlapMeasuresImageFilter.h.
typedef itksys::hash_map<LabelType, LabelSetMeasures> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapType |
Type of the map used to store data per label
Definition at line 117 of file itkLabelOverlapMeasuresImageFilter.h.
typedef SmartPointer<Self> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Pointer |
Definition at line 52 of file itkLabelOverlapMeasuresImageFilter.h.
typedef NumericTraits<LabelType>::RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::RealType |
Type to use for computations.
Definition at line 73 of file itkLabelOverlapMeasuresImageFilter.h.
typedef TLabelImage::RegionType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::RegionType |
Definition at line 66 of file itkLabelOverlapMeasuresImageFilter.h.
typedef LabelOverlapMeasuresImageFilter itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Self |
Standard Self typedef
Definition at line 50 of file itkLabelOverlapMeasuresImageFilter.h.
typedef TLabelImage::SizeType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::SizeType |
Definition at line 67 of file itkLabelOverlapMeasuresImageFilter.h.
typedef ImageToImageFilter<TLabelImage,TLabelImage> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Superclass |
Definition at line 51 of file itkLabelOverlapMeasuresImageFilter.h.
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Definition at line 186 of file itkLabelOverlapMeasuresImageFilter.h.
References itk::LabelOverlapMeasuresImageFilter< TLabelImage >::AfterThreadedGenerateData(), itk::LabelOverlapMeasuresImageFilter< TLabelImage >::AllocateOutputs(), itk::LabelOverlapMeasuresImageFilter< TLabelImage >::BeforeThreadedGenerateData(), itk::LabelOverlapMeasuresImageFilter< TLabelImage >::EnlargeOutputRequestedRegion(), itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelOverlapMeasuresImageFilter(), itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelSetMeasures::operator=(), itk::LabelOverlapMeasuresImageFilter< TLabelImage >::PrintSelf(), and itk::LabelOverlapMeasuresImageFilter< TLabelImage >::ThreadedGenerateData().
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If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.
Reimplemented from itk::ImageSource< TLabelImage >.
Referenced by itk::LabelOverlapMeasuresImageFilter< TLabelImage >::~LabelOverlapMeasuresImageFilter().
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overrideprotectedvirtual |
Pass the input through unmodified. Do this by setting the output to the source this by setting the output to the source image in the AllocateOutputs() method.
Reimplemented from itk::ImageSource< TLabelImage >.
Referenced by itk::LabelOverlapMeasuresImageFilter< TLabelImage >::~LabelOverlapMeasuresImageFilter().
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If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.
Reimplemented from itk::ImageSource< TLabelImage >.
Referenced by itk::LabelOverlapMeasuresImageFilter< TLabelImage >::~LabelOverlapMeasuresImageFilter().
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Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::Object.
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Give the process object a chance to indictate that it will produce more output than it was requested to produce. For example, many imaging filters must compute the entire output at once or can only produce output in complete slices. Such filters cannot handle smaller requested regions. These filters must provide an implementation of this method, setting the output requested region to the size they will produce. By default, a process object does not modify the size of the output requested region.
Reimplemented from itk::ProcessObject.
Referenced by itk::LabelOverlapMeasuresImageFilter< TLabelImage >::~LabelOverlapMeasuresImageFilter().
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alternative names
Definition at line 170 of file itkLabelOverlapMeasuresImageFilter.h.
References itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap().
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alternative names
Definition at line 172 of file itkLabelOverlapMeasuresImageFilter.h.
References itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap(), itkConceptMacro, and itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelOverlapMeasuresImageFilter().
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError | ( | ) | const |
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError | ( | LabelType | ) | const |
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError | ( | ) | const |
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError | ( | LabelType | ) | const |
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alternative names
Definition at line 166 of file itkLabelOverlapMeasuresImageFilter.h.
References itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap().
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alternative names
Definition at line 168 of file itkLabelOverlapMeasuresImageFilter.h.
References itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap().
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Get the label set measures
Definition at line 142 of file itkLabelOverlapMeasuresImageFilter.h.
References itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError(), itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError(), itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap(), itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTargetOverlap(), itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTotalOverlap(), itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap(), itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity(), and itk::LabelOverlapMeasuresImageFilter< TLabelImage >::m_LabelSetMeasures.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap | ( | ) | const |
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap | ( | LabelType | ) | const |
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Runtime information support.
Reimplemented from itk::ImageToImageFilter< TLabelImage, TLabelImage >.
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Get the source image.
Definition at line 134 of file itkLabelOverlapMeasuresImageFilter.h.
References itk::ImageToImageFilter< TLabelImage, TLabelImage >::GetInput().
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Get the target image.
Definition at line 138 of file itkLabelOverlapMeasuresImageFilter.h.
References itk::ImageToImageFilter< TLabelImage, TLabelImage >::GetInput().
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTargetOverlap | ( | LabelType | ) | const |
measures over individual labels
Referenced by itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetLabelSetMeasures().
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTotalOverlap | ( | ) | const |
tric overlap measuresmeasures over all labels
Referenced by itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetLabelSetMeasures().
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap | ( | ) | const |
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap | ( | LabelType | ) | const |
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity | ( | ) | const |
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity | ( | LabelType | ) | const |
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Method for creation through the object factory.
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Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::ImageToImageFilter< TLabelImage, TLabelImage >.
Referenced by itk::LabelOverlapMeasuresImageFilter< TLabelImage >::~LabelOverlapMeasuresImageFilter().
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Set the source image.
Definition at line 126 of file itkLabelOverlapMeasuresImageFilter.h.
References itk::ProcessObject::SetNthInput().
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Set the target image.
Definition at line 130 of file itkLabelOverlapMeasuresImageFilter.h.
References itk::ProcessObject::SetNthInput().
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Multi-thread version GenerateData.
Referenced by itk::LabelOverlapMeasuresImageFilter< TLabelImage >::~LabelOverlapMeasuresImageFilter().
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Image related typedefs.
Definition at line 123 of file itkLabelOverlapMeasuresImageFilter.h.
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Definition at line 211 of file itkLabelOverlapMeasuresImageFilter.h.
Referenced by itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetLabelSetMeasures().
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Definition at line 210 of file itkLabelOverlapMeasuresImageFilter.h.