template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFunction = ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage >, class TSharedData = typename TFunction::SharedDataType>
class itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >
Dense implementation of the Chan and Vese multiphase level set image filter.
This code was adapted from the paper:
"An active contour model without edges"
T. Chan and L. Vese.
In Scale-Space Theories in Computer Vision, pages 141-151, 1999.
- Author
- Mosaliganti K., Smith B., Gelas A., Gouaillard A., Megason S.
This code was taken from the Insight Journal paper:
"Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
http://www.insight-journal.org/browse/publication/642
https://hdl.handle.net/10380/3055
That is based on the papers:
"Level Set Segmentation: Active Contours without edge"
http://www.insight-journal.org/browse/publication/322
https://hdl.handle.net/1926/1532
and
"Level set segmentation using coupled active surfaces"
http://www.insight-journal.org/browse/publication/323
https://hdl.handle.net/1926/1533
- Wiki Examples:
-
Definition at line 65 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
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typedef SmartPointer< const Self > | ConstPointer |
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typedef FeatureImageType::Pointer | FeatureImagePointer |
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typedef TFeatureImage | FeatureImageType |
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typedef FeatureImageType::IndexType | FeatureIndexType |
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typedef FeatureIndexType::IndexValueType | FeatureIndexValueType |
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typedef FeatureImageType::PixelType | FeaturePixelType |
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typedef FeatureImageType::RegionType | FeatureRegionType |
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typedef Superclass::FiniteDifferenceFunctionType | FiniteDifferenceFunctionType |
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typedef FunctionType::Pointer | FunctionPointer |
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typedef TFunction | FunctionType |
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typedef OutputImageType::IndexType | IndexType |
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typedef Superclass::InputImagePointer | InputImagePointer |
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typedef Superclass::InputImageType | InputImageType |
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typedef Superclass::InputPointType | InputPointType |
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typedef InputImageType::SpacingType | InputSpacingType |
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typedef TOutputImage | OutputImageType |
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typedef OutputImageType::PixelType | OutputPixelType |
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typedef SmartPointer< Self > | Pointer |
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typedef ROIFilterType::Pointer | ROIFilterPointer |
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typedef RegionOfInterestImageFilter< FeatureImageType, FeatureImageType > | ROIFilterType |
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typedef ScalarChanAndVeseDenseLevelSetImageFilter | Self |
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typedef SharedDataType::Pointer | SharedDataPointer |
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typedef TSharedData | SharedDataType |
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typedef MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction > | Superclass |
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typedef Superclass::TimeStepType | TimeStepType |
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typedef Superclass::ValueType | ValueType |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef NeighborhoodAlgorithm::ImageBoundaryFacesCalculator< InputImageType > | FaceCalculatorType |
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typedef FaceCalculatorType::FaceListType | FaceListType |
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typedef Superclass::FeatureImagePointer | FeatureImagePointer |
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typedef Superclass::FeatureImageType | FeatureImageType |
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typedef Superclass::FeaturePixelType | FeaturePixelType |
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typedef Superclass::FeaturePointType | FeaturePointType |
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typedef Superclass::FeatureRegionType | FeatureRegionType |
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typedef Superclass::FeatureSizeType | FeatureSizeType |
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typedef Superclass::FeatureSpacingType | FeatureSpacingType |
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typedef Superclass::FiniteDifferenceFunctionPointer | FiniteDifferenceFunctionPointer |
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typedef Superclass::FiniteDifferenceFunctionType | FiniteDifferenceFunctionType |
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typedef Superclass::IdCellType | IdCellType |
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typedef Superclass::InputImagePointer | InputImagePointer |
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typedef Superclass::InputImageType | InputImageType |
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typedef Superclass::InputIndexType | InputIndexType |
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typedef Superclass::InputIndexValueType | InputIndexValueType |
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typedef Superclass::InputPixelType | InputPixelType |
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typedef Superclass::InputPointType | InputPointType |
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typedef Superclass::InputRegionType | InputRegionType |
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typedef Superclass::InputSizeType | InputSizeType |
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typedef Superclass::InputSizeValueType | InputSizeValueType |
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typedef Superclass::InputSpacingType | InputSpacingType |
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typedef MaurerType::Pointer | MaurerPointer |
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typedef SignedMaurerDistanceMapImageFilter< InputImageType, InputImageType > | MaurerType |
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typedef FiniteDifferenceFunctionType::NeighborhoodType | NeighborhoodIteratorType |
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typedef Superclass::OutputImagePointer | OutputImagePointer |
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typedef Superclass::OutputImageType | OutputImageType |
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typedef Superclass::OutputIndexType | OutputIndexType |
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typedef Superclass::OutputIndexValueType | OutputIndexValueType |
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typedef OutputImageType::PixelType | OutputPixelType |
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typedef Superclass::OutputRegionType | OutputRegionType |
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typedef Superclass::OutputSizeType | OutputSizeType |
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typedef SmartPointer< Self > | Pointer |
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typedef MultiphaseDenseFiniteDifferenceImageFilter | Self |
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typedef Superclass::OutputSizeValueType | SizeValueType |
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typedef MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int > | Superclass |
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typedef ThresholdFilterType::Pointer | ThresholdFilterPointer |
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typedef BinaryThresholdImageFilter< InputImageType, InputImageType > | ThresholdFilterType |
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typedef Superclass::TimeStepType | TimeStepType |
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typedef InputImageType::ValueType | ValueType |
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typedef Vector< float, itkGetStaticConstMacro(ImageDimension) > | CentroidVectorType |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef FeatureImageType::Pointer | FeatureImagePointer |
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typedef TFeatureImage | FeatureImageType |
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typedef FeatureImageType::PixelType | FeaturePixelType |
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typedef FeatureImageType::PointType | FeaturePointType |
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typedef FeatureImageType::RegionType | FeatureRegionType |
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typedef FeatureImageType::SizeType | FeatureSizeType |
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typedef FeatureImageType::SpacingType | FeatureSpacingType |
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typedef FiniteDifferenceFunctionType::Pointer | FiniteDifferenceFunctionPointer |
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typedef TFunction | FiniteDifferenceFunctionType |
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typedef unsigned int | IdCellType |
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typedef InputPointType::CoordRepType | InputCoordRepType |
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typedef InputImageType::Pointer | InputImagePointer |
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typedef TInputImage | InputImageType |
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typedef InputImageType::IndexType | InputIndexType |
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typedef InputIndexType::IndexValueType | InputIndexValueType |
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typedef InputImageType::OffsetValueType | InputOffsetValueType |
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typedef InputImageType::PixelType | InputPixelType |
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typedef InputImageType::PointType | InputPointType |
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typedef InputImageType::RegionType | InputRegionType |
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typedef InputImageType::SizeType | InputSizeType |
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typedef InputSizeType::SizeValueType | InputSizeValueType |
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typedef InputImageType::SpacingType | InputSpacingType |
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typedef KdTreeGeneratorType::Pointer | KdTreeGeneratorPointer |
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typedef Statistics::KdTreeGenerator< SampleType > | KdTreeGeneratorType |
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typedef KdTreeType::Pointer | KdTreePointer |
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typedef KdTreeGeneratorType::KdTreeType | KdTreeType |
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typedef OutputImageType::Pointer | OutputImagePointer |
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typedef TOutputImage | OutputImageType |
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typedef OutputImageType::IndexType | OutputIndexType |
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typedef OutputImageType::IndexValueType | OutputIndexValueType |
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typedef OutputImageType::PixelType | OutputPixelType |
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typedef OutputImageType::RegionType | OutputRegionType |
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typedef OutputImageType::SizeType | OutputSizeType |
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typedef OutputImageType::SizeValueType | OutputSizeValueType |
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typedef SmartPointer< Self > | Pointer |
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typedef FiniteDifferenceFunctionType::RadiusType | RadiusType |
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typedef Statistics::ListSample< CentroidVectorType > | SampleType |
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typedef MultiphaseFiniteDifferenceImageFilter | Self |
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typedef InPlaceImageFilter< TFeatureImage, TOutputImage > | Superclass |
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typedef FiniteDifferenceFunctionType::TimeStepType | TimeStepType |
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typedef std::vector< TimeStepType > | TimeStepVectorType |
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typedef std::vector< IdCellType > | VectorIdCellType |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef InputImageType::ConstPointer | InputImageConstPointer |
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typedef InputImageType::PixelType | InputImagePixelType |
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typedef InputImageType::Pointer | InputImagePointer |
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typedef InputImageType::RegionType | InputImageRegionType |
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typedef TFeatureImage | InputImageType |
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typedef Superclass::OutputImagePixelType | OutputImagePixelType |
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typedef Superclass::OutputImagePointer | OutputImagePointer |
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typedef Superclass::OutputImageRegionType | OutputImageRegionType |
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typedef Superclass::OutputImageType | OutputImageType |
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typedef SmartPointer< Self > | Pointer |
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typedef InPlaceImageFilter | Self |
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typedef ImageToImageFilter< TFeatureImage, TOutputImage > | Superclass |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef InputImageType::ConstPointer | InputImageConstPointer |
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typedef InputImageType::PixelType | InputImagePixelType |
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typedef InputImageType::Pointer | InputImagePointer |
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typedef InputImageType::RegionType | InputImageRegionType |
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typedef TFeatureImage | InputImageType |
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typedef Superclass::OutputImagePixelType | OutputImagePixelType |
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typedef Superclass::OutputImageRegionType | OutputImageRegionType |
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typedef SmartPointer< Self > | Pointer |
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typedef ImageToImageFilter | Self |
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typedef ImageSource< TOutputImage > | Superclass |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef Superclass::DataObjectIdentifierType | DataObjectIdentifierType |
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typedef DataObject::Pointer | DataObjectPointer |
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typedef Superclass::DataObjectPointerArraySizeType | DataObjectPointerArraySizeType |
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typedef OutputImageType::PixelType | OutputImagePixelType |
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typedef OutputImageType::Pointer | OutputImagePointer |
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typedef OutputImageType::RegionType | OutputImageRegionType |
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typedef TOutputImage | OutputImageType |
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typedef SmartPointer< Self > | Pointer |
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typedef ImageSource | Self |
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typedef ProcessObject | Superclass |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef DataObject::DataObjectIdentifierType | DataObjectIdentifierType |
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typedef DataObject::Pointer | DataObjectPointer |
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typedef std::vector< DataObjectPointer > | DataObjectPointerArray |
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typedef DataObjectPointerArray::size_type | DataObjectPointerArraySizeType |
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typedef std::vector< DataObjectIdentifierType > | NameArray |
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typedef SmartPointer< Self > | Pointer |
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typedef ProcessObject | Self |
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typedef Object | Superclass |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef SmartPointer< Self > | Pointer |
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typedef Object | Self |
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typedef LightObject | Superclass |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef SmartPointer< Self > | Pointer |
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typedef LightObject | Self |
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virtual void | Initialize () override |
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virtual void | InitializeIteration () override |
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| ScalarChanAndVeseDenseLevelSetImageFilter () |
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| ~ScalarChanAndVeseDenseLevelSetImageFilter () |
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virtual void | ApplyUpdate (TimeStepType dt) override |
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virtual void | CopyInputToOutput () override |
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| MultiphaseDenseFiniteDifferenceImageFilter () |
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virtual void | PostProcessOutput () override |
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virtual void | PrintSelf (std::ostream &, Indent indent) const override |
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| ~MultiphaseDenseFiniteDifferenceImageFilter () |
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virtual void | ApplyUpdate (TimeStepType dt)=0 |
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virtual void | GenerateData () override |
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virtual void | GenerateInputRequestedRegion () override |
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virtual bool | Halt () |
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| MultiphaseFiniteDifferenceImageFilter () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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TimeStepType | ResolveTimeStep (const TimeStepVectorType &timeStepList, const std::vector< bool > &valid) |
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virtual bool | ThreadedHalt (void *) |
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| ~MultiphaseFiniteDifferenceImageFilter () |
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virtual void | AllocateOutputs () override |
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virtual bool | GetRunningInPlace () const |
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| InPlaceImageFilter () |
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virtual void | ReleaseInputs () override |
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| ~InPlaceImageFilter () |
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virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
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virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
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| ImageToImageFilter () |
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virtual void | VerifyInputInformation () override |
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| ~ImageToImageFilter () |
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void | PushBackInput (const DataObject *input) override |
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void | PushFrontInput (const DataObject *input) override |
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virtual void | AfterThreadedGenerateData () |
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virtual void | BeforeThreadedGenerateData () |
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virtual const ImageRegionSplitterBase * | GetImageRegionSplitter () const |
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| ImageSource () |
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virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion) |
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virtual void | ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId) |
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virtual | ~ImageSource () |
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virtual void | AddInput (DataObject *input) |
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virtual void | AddOutput (DataObject *output) |
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bool | AddRequiredInputName (const DataObjectIdentifierType &) |
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bool | AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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virtual void | CacheInputReleaseDataFlags () |
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virtual void | GenerateOutputInformation () |
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virtual void | GenerateOutputRequestedRegion (DataObject *output) |
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DataObject * | GetInput (const DataObjectIdentifierType &key) |
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const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
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virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () const |
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virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () const |
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bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
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bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
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bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
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| itkLegacyMacro (virtual void RemoveOutput(DataObject *output)) |
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| itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num)) |
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| itkLegacyMacro (virtual void RemoveInput(DataObject *input)) |
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| itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num)) |
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DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
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DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
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DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
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DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
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| ProcessObject () |
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virtual void | PropagateResetPipeline () |
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virtual void | RemoveInput (const DataObjectIdentifierType &key) |
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virtual void | RemoveInput (DataObjectPointerArraySizeType) |
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virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
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virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
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bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
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virtual void | RestoreInputReleaseDataFlags () |
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virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
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virtual void | SetNthInput (DataObjectPointerArraySizeType num, DataObject *input) |
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virtual void | SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output) |
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void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
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void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
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virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
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virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
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virtual void | SetOutput (const DataObjectIdentifierType &key, DataObject *output) |
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virtual void | SetPrimaryInput (DataObject *input) |
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virtual void | SetPrimaryOutput (DataObject *output) |
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void | SetRequiredInputNames (const NameArray &) |
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virtual void | VerifyPreconditions () |
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| ~ProcessObject () |
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DataObject * | GetInput (DataObjectPointerArraySizeType idx) |
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const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
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DataObject * | GetPrimaryInput () |
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const DataObject * | GetPrimaryInput () const |
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virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
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virtual const char * | GetPrimaryInputName (void) const |
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DataObject * | GetOutput (const DataObjectIdentifierType &key) |
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const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
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virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
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virtual const char * | GetPrimaryOutputName (void) const |
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DataObject * | GetOutput (DataObjectPointerArraySizeType idx) |
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const DataObject * | GetOutput (DataObjectPointerArraySizeType idx) const |
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DataObject * | GetPrimaryOutput () |
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const DataObject * | GetPrimaryOutput () const |
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| Object () |
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bool | PrintObservers (std::ostream &os, Indent indent) const |
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virtual void | SetTimeStamp (const TimeStamp &time) |
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virtual | ~Object () |
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virtual LightObject::Pointer | InternalClone () const |
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| LightObject () |
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virtual void | PrintHeader (std::ostream &os, Indent indent) const |
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virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
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virtual | ~LightObject () |
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