itk::Statistics::JointDomainImageToListSampleAdaptor< TImage > Class Template Reference

#include <itkJointDomainImageToListSampleAdaptor.h>

Inheritance diagram for itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >:

Collaboration diagram for itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >:

Detailed Description

template<typename TImage>
class itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >

This adaptor returns measurement vectors composed of an image pixel's range domain value (pixel value) and spatial domain value (pixel's physical coordiantes).

This class is a derived class of the ListSample class. This class overrides the GetMeasurementVector method. The GetMeasurementVector returns a measurement vector that consist of a pixel's physical coordinates and intensity value. For example, if the image dimension is 3, and the pixel value is two component vector, the measurement vector is a 5 component vector. The first three component will be x, y, z physical coordinates (not index) and the rest two component is the pixel values. The type of component is float or which is determined by the ImageJointDomainTraits class. When the pixel value type is double, the component value type of a measurement vector is double. In other case, the component value type is float becase the physical coordinate value type is float. Since the measurment vector is a composition of spatial domain and range domain, for many statistical analysis, we want to normalize the values from both domains. For this purpose, there is the SetNormalizationFactors method. With the above example (5 component measurement vector), you can specify a 5 component normalization factor array. With such factors, the GetMeasurementVector method returns a measurement vector whose each component is divided by the corresponding component of the factor array.

See Also

Sample, ListSample, ImageToListSampleAdaptor

Definition at line 91 of file itkJointDomainImageToListSampleAdaptor.h.

Classes
class	ConstIterator
class	Iterator

Public Types
typedef Superclass::AbsoluteFrequencyType	AbsoluteFrequencyType
typedef SmartPointer< const Self >	ConstPointer
typedef ImageJointDomainTraitsType::CoordinateRepType	CoordinateRepType
typedef ImageRegionConstIterator < ImageType >	ImageConstIteratorType
typedef ImageType::ConstPointer	ImageConstPointer
typedef ImageType::IndexType	ImageIndexType
typedef ImageRegionIterator < ImageType >	ImageIteratorType
typedef ImageJointDomainTraits < TImage >	ImageJointDomainTraitsType
typedef ImageType::Pointer	ImagePointer
typedef ImageType::RegionType	ImageRegionType
typedef ImageType::SizeType	ImageSizeType
typedef TImage	ImageType
typedef Superclass::InstanceIdentifier	InstanceIdentifier
typedef std::vector < InstanceIdentifier >	InstanceIdentifierVectorType
typedef ImageJointDomainTraitsType::MeasurementType	MeasurementType
typedef Superclass::MeasurementVectorSizeType	MeasurementVectorSizeType
typedef ImageJointDomainTraitsType::MeasurementVectorType	MeasurementVectorType
typedef FixedArray< float, itkGetStaticConstMacro(MeasurementVectorSize) >	NormalizationFactorsType
typedef ImageType::PixelContainerConstPointer	PixelContainerConstPointer
typedef ImageType::PixelType	PixelType
typedef SmartPointer< Self >	Pointer
typedef ImageJointDomainTraitsType::PointType	PointType
typedef ImageJointDomainTraitsType::RangeDomainMeasurementType	RangeDomainMeasurementType
typedef FixedArray < RangeDomainMeasurementType, itkGetStaticConstMacro(RangeDomainDimension) >	RangeDomainMeasurementVectorType
typedef JointDomainImageToListSampleAdaptor	Self
typedef ListSample< typename ImageJointDomainTraits< TImage > ::MeasurementVectorType >	Superclass
typedef Superclass::TotalAbsoluteFrequencyType	TotalAbsoluteFrequencyType
typedef MeasurementVectorType	ValueType
Public Types inherited from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >
typedef Superclass::AbsoluteFrequencyType	AbsoluteFrequencyType
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::InstanceIdentifier	InstanceIdentifier
typedef std::vector < MeasurementVectorType >	InternalDataContainerType
typedef Superclass::MeasurementType	MeasurementType
typedef Superclass::MeasurementVectorSizeType	MeasurementVectorSizeType
typedef Superclass::MeasurementVectorType	MeasurementVectorType
typedef SmartPointer< Self >	Pointer
typedef ListSample	Self
typedef Sample < ImageJointDomainTraits < TImage > ::MeasurementVectorType >	Superclass
typedef Superclass::TotalAbsoluteFrequencyType	TotalAbsoluteFrequencyType
typedef MeasurementVectorType	ValueType
Public Types inherited from itk::Statistics::Sample< ImageJointDomainTraits< TImage >::MeasurementVectorType >
typedef MeasurementVectorTraits::AbsoluteFrequencyType	AbsoluteFrequencyType
typedef SmartPointer< const Self >	ConstPointer
typedef MeasurementVectorTraits::InstanceIdentifier	InstanceIdentifier
typedef MeasurementVectorTraitsTypes < MeasurementVectorType > ::ValueType	MeasurementType
typedef unsigned int	MeasurementVectorSizeType
typedef ImageJointDomainTraits < TImage > ::MeasurementVectorType	MeasurementVectorType
typedef SmartPointer< Self >	Pointer
typedef Sample	Self
typedef DataObject	Superclass
typedef NumericTraits < AbsoluteFrequencyType > ::AccumulateType	TotalAbsoluteFrequencyType

Public Member Functions
Iterator	Begin ()
ConstIterator	Begin () const
virtual ::itk::LightObject::Pointer	CreateAnother () const
Iterator	End ()
ConstIterator	End () const
AbsoluteFrequencyType	GetFrequency (InstanceIdentifier id) const override
const TImage *	GetImage () const
const MeasurementVectorType &	GetMeasurementVector (InstanceIdentifier id) const override
virtual const char *	GetNameOfClass () const
TotalAbsoluteFrequencyType	GetTotalFrequency () const override
void	SetImage (const TImage *image)
void	SetNormalizationFactors (NormalizationFactorsType &factors)
InstanceIdentifier	Size () const override
virtual void	SetUsePixelContainer (bool _arg)
virtual bool	GetUsePixelContainer () const
virtual void	UsePixelContainerOn ()
virtual void	UsePixelContainerOff ()
Public Member Functions inherited from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >
Iterator	Begin ()
ConstIterator	Begin () const
void	Clear ()
virtual ::itk::LightObject::Pointer	CreateAnother () const
Iterator	End ()
ConstIterator	End () const
AbsoluteFrequencyType	GetFrequency (InstanceIdentifier id) const override
const MeasurementVectorType &	GetMeasurementVector (InstanceIdentifier id) const override
TotalAbsoluteFrequencyType	GetTotalFrequency () const override
virtual void	Graft (const DataObject *thatObject) override
void	PushBack (const MeasurementVectorType &mv)
void	Resize (InstanceIdentifier newsize)
void	SetMeasurement (InstanceIdentifier id, unsigned int dim, const MeasurementType &value)
void	SetMeasurementVector (InstanceIdentifier id, const MeasurementVectorType &mv)
InstanceIdentifier	Size () const override
Public Member Functions inherited from itk::Statistics::Sample< ImageJointDomainTraits< TImage >::MeasurementVectorType >
virtual MeasurementVectorSizeType	GetMeasurementVectorSize () const
virtual void	SetMeasurementVectorSize (MeasurementVectorSizeType s)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >
static Pointer	New ()

Static Public Attributes
static const unsigned int	MeasurementVectorSize = ImageJointDomainTraitsType::Dimension
static const unsigned int	RangeDomainDimension = itk::PixelTraits< typename TImage::PixelType >::Dimension

Protected Member Functions
	JointDomainImageToListSampleAdaptor ()
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual	~JointDomainImageToListSampleAdaptor ()
Protected Member Functions inherited from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >
	ListSample ()
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual	~ListSample ()
Protected Member Functions inherited from itk::Statistics::Sample< ImageJointDomainTraits< TImage >::MeasurementVectorType >
	Sample ()
virtual	~Sample ()

Private Attributes
ImageConstPointer	m_Image
NormalizationFactorsType	m_NormalizationFactors
PixelContainerConstPointer	m_PixelContainer
ImageIndexType	m_TempIndex
PointType	m_TempPoint
RangeDomainMeasurementVectorType	m_TempRangeVector
MeasurementVectorType	m_TempVector
bool	m_UsePixelContainer

Member Typedef Documentation

template<typename TImage >

typedef Superclass::AbsoluteFrequencyType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::AbsoluteFrequencyType

typedefs for Measurement vector, measurement, Instance Identifier, frequency, size, size element value

Definition at line 127 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef SmartPointer< const Self > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ConstPointer

Definition at line 103 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageJointDomainTraitsType::CoordinateRepType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::CoordinateRepType

Definition at line 111 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageRegionConstIterator< ImageType > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageConstIteratorType

Definition at line 134 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageType::ConstPointer itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageConstPointer

Definition at line 137 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageType::IndexType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageIndexType

Definition at line 140 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageRegionIterator< ImageType > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageIteratorType

Definition at line 133 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageJointDomainTraits< TImage > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageJointDomainTraitsType

Definition at line 105 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageType::Pointer itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImagePointer

Definition at line 136 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageType::RegionType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageRegionType

Definition at line 142 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageType::SizeType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageSizeType

Definition at line 141 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef TImage itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageType

Image typedefs

Definition at line 132 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef Superclass::InstanceIdentifier itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::InstanceIdentifier

Definition at line 129 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef std::vector< InstanceIdentifier > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::InstanceIdentifierVectorType

Definition at line 166 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageJointDomainTraitsType::MeasurementType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::MeasurementType

Definition at line 108 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef Superclass::MeasurementVectorSizeType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::MeasurementVectorSizeType

Definition at line 123 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageJointDomainTraitsType::MeasurementVectorType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::MeasurementVectorType

Definition at line 107 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef FixedArray< float, itkGetStaticConstMacro(MeasurementVectorSize) > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::NormalizationFactorsType

Definition at line 167 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageType::PixelContainerConstPointer itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::PixelContainerConstPointer

Definition at line 139 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageType::PixelType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::PixelType

Definition at line 138 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef SmartPointer< Self > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::Pointer

Definition at line 102 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageJointDomainTraitsType::PointType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::PointType

Definition at line 110 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ImageJointDomainTraitsType::RangeDomainMeasurementType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::RangeDomainMeasurementType

Definition at line 109 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef FixedArray< RangeDomainMeasurementType, itkGetStaticConstMacro(RangeDomainDimension) > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::RangeDomainMeasurementVectorType

Definition at line 164 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef JointDomainImageToListSampleAdaptor itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::Self

Standard class typedefs

Definition at line 97 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef ListSample< typename ImageJointDomainTraits< TImage >::MeasurementVectorType > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::Superclass

Definition at line 100 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef Superclass::TotalAbsoluteFrequencyType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::TotalAbsoluteFrequencyType

Definition at line 128 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

typedef MeasurementVectorType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ValueType

Definition at line 143 of file itkJointDomainImageToListSampleAdaptor.h.

Constructor & Destructor Documentation

template<typename TImage >

itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::JointDomainImageToListSampleAdaptor ( )

protected

template<typename TImage >

virtual itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::~JointDomainImageToListSampleAdaptor ( )

inlineprotectedvirtual

Definition at line 332 of file itkJointDomainImageToListSampleAdaptor.h.

Member Function Documentation

template<typename TImage >

Iterator itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::Begin ( )

inline

returns an iterator that points to the beginning of the container

Definition at line 299 of file itkJointDomainImageToListSampleAdaptor.h.

Referenced by itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ConstIterator::ConstIterator().

template<typename TImage >

ConstIterator itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::Begin ( ) const

inline

returns an iterator that points to the beginning of the container

Definition at line 315 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

virtual::itk::LightObject::Pointer itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::CreateAnother

(

)

const

template<typename TImage >

Iterator itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::End ( )

inline

returns an iterator that points to the end of the container

Definition at line 307 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

ConstIterator itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::End ( ) const

inline

returns an iterator that points to the end of the container

Definition at line 323 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

AbsoluteFrequencyType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::GetFrequency ( InstanceIdentifier  id ) const

override

Get frequency

template<typename TImage >

const TImage* itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::GetImage

(

)

const

Method to get the image

template<typename TImage >

const MeasurementVectorType& itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::GetMeasurementVector ( InstanceIdentifier  id ) const

override

Gets the measurement vector specified by the instance identifier. This method overrides superclass method.

template<typename TImage >

virtual const char* itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<typename TImage >

TotalAbsoluteFrequencyType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::GetTotalFrequency ( ) const

overridevirtual

Get total frequency

Implements itk::Statistics::Sample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<typename TImage >

virtual bool itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::GetUsePixelContainer ( ) const

virtual

Method to set UsePixelContainer flag

template<typename TImage >

static Pointer itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::New ( )

static

Method for creation through the object factory.

template<typename TImage >

void itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotectedvirtual

Reimplemented from itk::Statistics::Sample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<typename TImage >

void itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::SetImage

(

const TImage *

image

)

Method to set the image

template<typename TImage >

void itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::SetNormalizationFactors

(

NormalizationFactorsType &

factors

)

Sets the normalization factors

template<typename TImage >

virtual void itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::SetUsePixelContainer ( bool  _arg )

virtual

Method to set UsePixelContainer flag

template<typename TImage >

InstanceIdentifier itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::Size ( ) const

overridevirtual

returns the number of measurement vectors in this container

Implements itk::Statistics::Sample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<typename TImage >

virtual void itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::UsePixelContainerOff ( )

virtual

Method to set UsePixelContainer flag

template<typename TImage >

virtual void itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::UsePixelContainerOn ( )

virtual

Method to set UsePixelContainer flag

Member Data Documentation

template<typename TImage >

ImageConstPointer itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::m_Image

private

Definition at line 343 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

NormalizationFactorsType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::m_NormalizationFactors

private

Definition at line 336 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

PixelContainerConstPointer itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::m_PixelContainer

private

Definition at line 346 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

ImageIndexType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::m_TempIndex

mutableprivate

Definition at line 341 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

PointType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::m_TempPoint

mutableprivate

Definition at line 340 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

RangeDomainMeasurementVectorType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::m_TempRangeVector

mutableprivate

Definition at line 342 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

MeasurementVectorType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::m_TempVector

mutableprivate

Definition at line 339 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

bool itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::m_UsePixelContainer

private

Definition at line 344 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

const unsigned int itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::MeasurementVectorSize = ImageJointDomainTraitsType::Dimension

static

the number of components in a measurement vector

Definition at line 121 of file itkJointDomainImageToListSampleAdaptor.h.

template<typename TImage >

const unsigned int itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::RangeDomainDimension = itk::PixelTraits< typename TImage::PixelType >::Dimension

static

Definition at line 161 of file itkJointDomainImageToListSampleAdaptor.h.

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The documentation for this class was generated from the following file:

• itkJointDomainImageToListSampleAdaptor.h