ITK
4.13.0
Insight Segmentation and Registration Toolkit
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#include <itkAttributeMorphologyBaseImageFilter.h>
Morphological opening by attributes.
This is the base class for morphology attribute operations. Attribute openings remove blobs according to criteria such as area. When applied to grayscale images it has the effect of trimming peaks based on area while leaving the rest of the image unchanged. It is possible to use attributes besides area, but no others are implemented yet. This filter uses some dodgy coding practices - most notably copying the image data to a linear buffer to allow direct implementation of the published algorithm. It should therefore be quite a good candidate to carry out tests of itk iterator performance with randomish access patterns.
This filter is implemented using the method of Wilkinson, "A comparison of algorithms for Connected set openings and Closings", A. Meijster and M. H. Wilkinson, PAMI, vol 24, no. 4, April 2002. Attempts at implementing the method from ISMM 2000 are also included, but operation appears incorrect. Check the ifdefs if you are interested.
This code was contributed in the Insight Journal paper
"Grayscale morphological attribute operations" by Beare R. https://hdl.handle.net/1926/1316 http://www.insight-journal.org/browse/publication/203
Definition at line 63 of file itkAttributeMorphologyBaseImageFilter.h.
Classes | |
class | ComparePixStruct |
class | GreyAndPos |
Public Types | |
typedef TAttribute | AttributeType |
typedef SmartPointer< const Self > | ConstPointer |
typedef TInputImage::IndexType | IndexType |
typedef Superclass::InputImagePointer | InputImagePointer |
typedef TInputImage | InputImageType |
typedef TInputImage::InternalPixelType | InputInternalPixelType |
typedef TInputImage::PixelType | InputPixelType |
typedef std::list< IndexType > | ListType |
typedef TInputImage::OffsetType | OffsetType |
typedef TOutputImage | OutputImageType |
typedef TOutputImage::InternalPixelType | OutputInternalPixelType |
typedef TOutputImage::PixelType | OutputPixelType |
typedef SmartPointer< Self > | Pointer |
typedef TOutputImage::RegionType | RegionType |
typedef AttributeMorphologyBaseImageFilter | Self |
typedef TInputImage::SizeType | SizeType |
typedef ImageToImageFilter < TInputImage, TOutputImage > | Superclass |
Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef InputImageType::ConstPointer | InputImageConstPointer |
typedef InputImageType::PixelType | InputImagePixelType |
typedef InputImageType::Pointer | InputImagePointer |
typedef InputImageType::RegionType | InputImageRegionType |
typedef TInputImage | InputImageType |
typedef Superclass::OutputImagePixelType | OutputImagePixelType |
typedef Superclass::OutputImageRegionType | OutputImageRegionType |
typedef SmartPointer< Self > | Pointer |
typedef ImageToImageFilter | Self |
typedef ImageSource< TOutputImage > | Superclass |
Public Types inherited from itk::ImageSource< TOutputImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef Superclass::DataObjectIdentifierType | DataObjectIdentifierType |
typedef DataObject::Pointer | DataObjectPointer |
typedef Superclass::DataObjectPointerArraySizeType | DataObjectPointerArraySizeType |
typedef OutputImageType::PixelType | OutputImagePixelType |
typedef OutputImageType::Pointer | OutputImagePointer |
typedef OutputImageType::RegionType | OutputImageRegionType |
typedef TOutputImage | OutputImageType |
typedef SmartPointer< Self > | Pointer |
typedef ImageSource | Self |
typedef ProcessObject | Superclass |
Public Types inherited from itk::ProcessObject | |
typedef SmartPointer< const Self > | ConstPointer |
typedef DataObject::DataObjectIdentifierType | DataObjectIdentifierType |
typedef DataObject::Pointer | DataObjectPointer |
typedef std::vector < DataObjectPointer > | DataObjectPointerArray |
typedef DataObjectPointerArray::size_type | DataObjectPointerArraySizeType |
typedef MultiThreader | MultiThreaderType |
typedef std::vector < DataObjectIdentifierType > | NameArray |
typedef SmartPointer< Self > | Pointer |
typedef ProcessObject | Self |
typedef Object | Superclass |
Public Types inherited from itk::Object | |
typedef SmartPointer< const Self > | ConstPointer |
typedef SmartPointer< Self > | Pointer |
typedef Object | Self |
typedef LightObject | Superclass |
Public Types inherited from itk::LightObject | |
typedef SmartPointer< const Self > | ConstPointer |
typedef SmartPointer< Self > | Pointer |
typedef LightObject | Self |
Static Public Member Functions | |
static Pointer | New () |
Static Public Member Functions inherited from itk::Object | |
static bool | GetGlobalWarningDisplay () |
static void | GlobalWarningDisplayOff () |
static void | GlobalWarningDisplayOn () |
static Pointer | New () |
static void | SetGlobalWarningDisplay (bool flag) |
Static Public Member Functions inherited from itk::LightObject | |
static void | BreakOnError () |
static Pointer | New () |
Static Public Attributes | |
static const unsigned int | ImageDimension = TOutputImage::ImageDimension |
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage > | |
static const unsigned int | InputImageDimension = TInputImage::ImageDimension |
static const unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
Static Public Attributes inherited from itk::ImageSource< TOutputImage > | |
static const unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
Protected Attributes | |
AttributeType | m_AttributeValuePerPixel |
Protected Attributes inherited from itk::ProcessObject | |
TimeStamp | m_OutputInformationMTime |
bool | m_Updating |
Protected Attributes inherited from itk::LightObject | |
AtomicInt< int > | m_ReferenceCount |
Private Types | |
typedef std::vector < OffsetValueType > | OffsetDirectVecType |
typedef std::vector< OffsetType > | OffsetVecType |
Private Member Functions | |
bool | Criterion (OffsetValueType x, OffsetValueType y) |
OffsetValueType | FindRoot (OffsetValueType x) |
void | MakeSet (OffsetValueType x) |
void | SetupOffsetVec (OffsetDirectVecType &PosOffsets, OffsetVecType &Offsets) |
void | Union (OffsetValueType n, OffsetValueType p) |
Private Attributes | |
AttributeType * | m_AuxData |
bool | m_FullyConnected |
AttributeType | m_Lambda |
OffsetValueType * | m_Parent |
InputPixelType * | m_Raw |
GreyAndPos * | m_SortPixels |
Static Private Attributes | |
static const OffsetValueType | ACTIVE = -2 |
static const OffsetValueType | INACTIVE = -1 |
static const OffsetValueType | ROOT = -3 |
Additional Inherited Members | |
Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage > | |
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) > | InputToOutputRegionCopierType |
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) > | OutputToInputRegionCopierType |
Static Protected Member Functions inherited from itk::ImageSource< TOutputImage > | |
static const ImageRegionSplitterBase * | GetGlobalDefaultSplitter () |
static ITK_THREAD_RETURN_TYPE | ThreaderCallback (void *arg) |
typedef TAttribute itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::AttributeType |
Definition at line 102 of file itkAttributeMorphologyBaseImageFilter.h.
typedef SmartPointer< const Self > itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::ConstPointer |
Definition at line 108 of file itkAttributeMorphologyBaseImageFilter.h.
typedef TInputImage::IndexType itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::IndexType |
Definition at line 86 of file itkAttributeMorphologyBaseImageFilter.h.
typedef Superclass::InputImagePointer itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::InputImagePointer |
Types from the Superclass
Definition at line 76 of file itkAttributeMorphologyBaseImageFilter.h.
typedef TInputImage itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::InputImageType |
Image typedef support
Definition at line 96 of file itkAttributeMorphologyBaseImageFilter.h.
typedef TInputImage::InternalPixelType itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::InputInternalPixelType |
Definition at line 85 of file itkAttributeMorphologyBaseImageFilter.h.
typedef TInputImage::PixelType itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::InputPixelType |
Definition at line 84 of file itkAttributeMorphologyBaseImageFilter.h.
typedef std::list< IndexType > itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::ListType |
Definition at line 101 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 185 of file itkAttributeMorphologyBaseImageFilter.h.
typedef TInputImage::OffsetType itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::OffsetType |
Definition at line 87 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 183 of file itkAttributeMorphologyBaseImageFilter.h.
typedef TOutputImage itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::OutputImageType |
Definition at line 97 of file itkAttributeMorphologyBaseImageFilter.h.
typedef TOutputImage::InternalPixelType itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::OutputInternalPixelType |
Definition at line 83 of file itkAttributeMorphologyBaseImageFilter.h.
typedef TOutputImage::PixelType itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::OutputPixelType |
Extract some information from the image types. Dimensionality of the two images is assumed to be the same.
Definition at line 82 of file itkAttributeMorphologyBaseImageFilter.h.
typedef SmartPointer< Self > itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::Pointer |
Smart pointer typedef support
Definition at line 107 of file itkAttributeMorphologyBaseImageFilter.h.
typedef TOutputImage::RegionType itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::RegionType |
Definition at line 100 of file itkAttributeMorphologyBaseImageFilter.h.
typedef AttributeMorphologyBaseImageFilter itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::Self |
Standard "Self" & Superclass typedef.
Definition at line 70 of file itkAttributeMorphologyBaseImageFilter.h.
typedef TInputImage::SizeType itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::SizeType |
Definition at line 88 of file itkAttributeMorphologyBaseImageFilter.h.
typedef ImageToImageFilter< TInputImage, TOutputImage > itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, TFunction >::Superclass |
Definition at line 71 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 141 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 148 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 149 of file itkAttributeMorphologyBaseImageFilter.h.
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Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::Object.
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Definition at line 244 of file itkAttributeMorphologyBaseImageFilter.h.
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AttributeMorphologyBaseImageFilter will produce all of the output. Therefore it must provide an implementation of EnlargeOutputRequestedRegion().
Reimplemented from itk::ProcessObject.
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Definition at line 231 of file itkAttributeMorphologyBaseImageFilter.h.
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Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.
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Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.
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Standard pipeline method.
Reimplemented from itk::ImageSource< TOutputImage >.
Referenced by itk::AreaClosingImageFilter< TInputImage, TOutputImage, TAttribute >::GenerateData(), and itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::GenerateData().
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AttributeMorphologyBaseImageFilter needs the entire input. Therefore it must provide an implementation GenerateInputRequestedRegion().
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
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Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.
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Set/Get the threshold value used to select the connected components. The connected components greater or equal to Lambda are kept, the others are removed. Lambda defaults to 0.
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Run-time type information (and related methods)
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Reimplemented in itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >, and itk::AreaClosingImageFilter< TInputImage, TOutputImage, TAttribute >.
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Definition at line 225 of file itkAttributeMorphologyBaseImageFilter.h.
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Method for creation through the object factory.
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Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Referenced by itk::AreaClosingImageFilter< TInputImage, TOutputImage, TAttribute >::PrintSelf(), and itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::PrintSelf().
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Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.
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Set/Get the threshold value used to select the connected components. The connected components greater or equal to Lambda are kept, the others are removed. Lambda defaults to 0.
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Definition at line 249 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 177 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 91 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 176 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 168 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 181 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 172 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 173 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 197 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 202 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 196 of file itkAttributeMorphologyBaseImageFilter.h.
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Definition at line 178 of file itkAttributeMorphologyBaseImageFilter.h.