itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage > Class Template Reference

#include <itkCompareHistogramImageToImageMetric.h>

Inheritance diagram for itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >:

Collaboration diagram for itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >:

Detailed Description

template<typename TFixedImage, typename TMovingImage>
class itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >

Compares Histograms between two images to be registered to a Training Histogram.

This class is templated over the type of the fixed and moving images to be compared.

This metric computes the similarity between the histogram produced by two images overlapping and a training histogram.

It is to be sub-classed by the method of comparing the histograms.

Generally, the histogram from the training data is to be computed in exactly the same way as the histogram from the images to be compared are computed. Thus, the user can set the interpolator, region, two training images and the transform and the training histogram will be formed. OR, the user can simply calculate the training histogram separately and set it.

Warning

The Initialize function does nothing if the training histogram already exists. Thus repeated calls to the Initialize function do nothing after the first call. If you wish the training histogram to be re-calculated, you should set it to 0.

Author

Samson Timoner.

Definition at line 56 of file itkCompareHistogramImageToImageMetric.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef HistogramType::AbsoluteFrequencyType	HistogramAbsoluteFrequencyType
typedef HistogramAbsoluteFrequencyType	HistogramFrequencyType
typedef HistogramType::Iterator	HistogramIteratorType
typedef HistogramType::MeasurementVectorType	HistogramMeasurementVectorType
typedef HistogramType::Pointer	HistogramPointerType
typedef Superclass::HistogramSizeType	HistogramSizeType
typedef Superclass::HistogramType	HistogramType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass::MovingImageType	MovingImageType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef CompareHistogramImageToImageMetric	Self
typedef HistogramImageToImageMetric < TFixedImage, TMovingImage >	Superclass
typedef TransformType::ConstPointer	TransformConstPointer
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointerType
typedef Superclass::FixedImageType::PixelType	FixedImagePixelType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef HistogramType::Pointer	HistogramPointer
typedef HistogramType::SizeType	HistogramSizeType
typedef Statistics::Histogram < double >	HistogramType
typedef Superclass::InputPointType	InputPointType
typedef HistogramType::MeasurementVectorType	MeasurementVectorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointerType
typedef Superclass::MovingImageType::PixelType	MovingImagePixelType
typedef Superclass::MovingImageType	MovingImageType
typedef Superclass::OutputPointType	OutputPointType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef Array< double >	ScalesType
typedef HistogramImageToImageMetric	Self
typedef ImageToImageMetric < TFixedImage, TMovingImage >	Superclass
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::ParametersValueType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef FixedImageType::ConstPointer	FixedImageConstPointer
typedef std::vector < FixedImageIndexType >	FixedImageIndexContainer
typedef FixedImageType::IndexType	FixedImageIndexType
typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType
typedef FixedImageMaskType::ConstPointer	FixedImageMaskConstPointer
typedef FixedImageMaskType::Pointer	FixedImageMaskPointer
typedef SpatialObject < itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskType
typedef TFixedImage::PixelType	FixedImagePixelType
typedef TransformType::InputPointType	FixedImagePointType
typedef FixedImageType::RegionType	FixedImageRegionType
typedef TFixedImage	FixedImageType
typedef TransformType::InputPointType	InputPointType
typedef InterpolatorType::Pointer	InterpolatorPointer
typedef InterpolateImageFunction < MovingImageType, CoordinateRepresentationType >	InterpolatorType
typedef Superclass::MeasureType	MeasureType
typedef MovingImageType::ConstPointer	MovingImageConstPointer
typedef MovingImageType::IndexType	MovingImageIndexType
typedef MovingImageMaskType::ConstPointer	MovingImageMaskConstPointer
typedef MovingImageMaskType::Pointer	MovingImageMaskPointer
typedef SpatialObject < itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskType
typedef TMovingImage::PixelType	MovingImagePixelType
typedef TransformType::OutputPointType	MovingImagePointType
typedef TMovingImage	MovingImageType
typedef MultiThreader	MultiThreaderType
typedef TransformType::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef ImageToImageMetric	Self
typedef SingleValuedCostFunction	Superclass
typedef TransformType::JacobianType	TransformJacobianType
typedef TransformType::ParametersType	TransformParametersType
typedef TransformType::Pointer	TransformPointer
typedef Transform < CoordinateRepresentationType, itkGetStaticConstMacro(MovingImageDimension), itkGetStaticConstMacro(FixedImageDimension) >	TransformType
typedef NumericTraits < MovingImagePixelType > ::RealType	RealType
typedef CovariantVector < RealType, itkGetStaticConstMacro(MovingImageDimension) >	GradientPixelType
typedef Image < GradientPixelType, itkGetStaticConstMacro(MovingImageDimension) >	GradientImageType
typedef SmartPointer < GradientImageType >	GradientImagePointer
typedef GradientRecursiveGaussianImageFilter < MovingImageType, GradientImageType >	GradientImageFilterType
typedef GradientImageFilterType::Pointer	GradientImageFilterPointer
Public Types inherited from itk::SingleValuedCostFunction
typedef SmartPointer< const Self >	ConstPointer
typedef Array < ParametersValueType >	DerivativeType
typedef double	MeasureType
typedef Superclass::ParametersType	ParametersType
typedef Superclass::ParametersValueType	ParametersValueType
typedef SmartPointer< Self >	Pointer
typedef SingleValuedCostFunction	Self
typedef CostFunction	Superclass
Public Types inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
typedef SmartPointer< const Self >	ConstPointer
typedef OptimizerParameters < TInternalComputationValueType >	ParametersType
typedef TInternalComputationValueType	ParametersValueType
typedef SmartPointer< Self >	Pointer
typedef CostFunctionTemplate	Self
typedef Object	Superclass
Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef Object	Self
typedef LightObject	Superclass
Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef LightObject	Self

Public Member Functions
virtual const char *	GetNameOfClass () const
unsigned int	GetNumberOfParameters (void) const override
void	Initialize () override
virtual void	SetTrainingFixedImage (const FixedImageType *_arg)
virtual void	SetTrainingHistogram (HistogramPointerType _arg)
virtual const HistogramPointerType &	GetTrainingHistogram () const
virtual void	SetTrainingMovingImage (const MovingImageType *_arg)
virtual const MovingImageType *	GetTrainingMovingImage () const
virtual void	SetTrainingTransform (TransformType *_arg)
virtual TransformType *	GetModifiableTrainingTransform ()
virtual const TransformType *	GetTrainingTransform () const
virtual void	SetTrainingInterpolator (InterpolatorType *_arg)
virtual InterpolatorType *	GetModifiableTrainingInterpolator ()
virtual const InterpolatorType *	GetTrainingInterpolator () const
virtual void	SetTrainingFixedImageRegion (FixedImageRegionType _arg)
virtual const FixedImageRegionType &	GetTrainingFixedImageRegion () const
Public Member Functions inherited from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >
void	GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const override
virtual double	GetDerivativeStepLength () const
virtual const ScalesType &	GetDerivativeStepLengthScales () const
virtual const HistogramPointer &	GetHistogram () const
virtual const HistogramSizeType &	GetHistogramSize () const
const MeasurementVectorType &	GetLowerBound () const
virtual const FixedImagePixelType &	GetPaddingValue () const
const MeasurementVectorType &	GetUpperBound () const
MeasureType	GetValue (const TransformParametersType &parameters) const override
void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
void	Initialize () override
virtual void	SetDerivativeStepLength (double _arg)
virtual void	SetDerivativeStepLengthScales (ScalesType _arg)
virtual void	SetHistogramSize (HistogramSizeType _arg)
void	SetLowerBound (const MeasurementVectorType &bound)
virtual void	SetPaddingValue (FixedImagePixelType _arg)
void	SetTransform (TransformType *transform) override
void	SetUpperBound (const MeasurementVectorType &bound)
virtual void	SetUpperBoundIncreaseFactor (double _arg)
virtual double	GetUpperBoundIncreaseFactor () const
virtual void	SetUsePaddingValue (bool _arg)
virtual bool	GetUsePaddingValue () const
Public Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
virtual void	ComputeGradient ()
virtual const FixedImageRegionType &	GetFixedImageRegion () const
virtual const FixedImagePixelType &	GetFixedImageSamplesIntensityThreshold () const
virtual const GradientImageType *	GetGradientImage () const
virtual const InterpolatorType *	GetInterpolator () const
virtual GradientImageType *	GetModifiableGradientImage ()
virtual InterpolatorType *	GetModifiableInterpolator ()
virtual TransformType *	GetModifiableTransform ()
SizeValueType	GetNumberOfMovingImageSamples (void)
virtual const SizeValueType &	GetNumberOfPixelsCounted () const
SizeValueType	GetNumberOfSpatialSamples (void)
virtual const TransformType *	GetTransform () const
virtual const bool &	GetUseAllPixels () const
virtual const bool &	GetUseFixedImageIndexes () const
virtual const bool &	GetUseFixedImageSamplesIntensityThreshold () const
virtual const bool &	GetUseSequentialSampling () const
virtual void	MultiThreadingInitialize (void)
void	SetFixedImageIndexes (const FixedImageIndexContainer &indexes)
virtual void	SetFixedImageRegion (const FixedImageRegionType reg)
void	SetFixedImageSamplesIntensityThreshold (const FixedImagePixelType &thresh)
virtual void	SetInterpolator (InterpolatorType *_arg)
void	SetNumberOfSpatialSamples (SizeValueType num)
virtual void	SetTransform (TransformType *_arg)
void	SetTransformParameters (const ParametersType &parameters) const
void	SetUseAllPixels (bool useAllPixels)
void	SetUseFixedImageIndexes (bool useIndex)
void	SetUseFixedImageSamplesIntensityThreshold (bool useThresh)
void	SetUseSequentialSampling (bool sequentialSampling)
void	UseAllPixelsOff (void)
void	UseAllPixelsOn (void)
virtual void	SetFixedImage (const FixedImageType *_arg)
virtual const FixedImageType *	GetFixedImage () const
virtual void	SetMovingImage (const MovingImageType *_arg)
virtual const MovingImageType *	GetMovingImage () const
virtual void	SetMovingImageMask (MovingImageMaskType *_arg)
virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)
virtual const MovingImageMaskType *	GetMovingImageMask () const
virtual void	SetFixedImageMask (FixedImageMaskType *_arg)
virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)
virtual const FixedImageMaskType *	GetFixedImageMask () const
void	SetNumberOfThreads (ThreadIdType numberOfThreads)
virtual const ThreadIdType &	GetNumberOfThreads () const
virtual void	SetComputeGradient (bool _arg)
virtual const bool &	GetComputeGradient () const
virtual void	ComputeGradientOn ()
virtual void	ComputeGradientOff ()
virtual void	SetNumberOfFixedImageSamples (SizeValueType numSamples)
virtual const SizeValueType &	GetNumberOfFixedImageSamples () const
void	ReinitializeSeed ()
void	ReinitializeSeed (int seed)
virtual void	SetUseCachingOfBSplineWeights (bool _arg)
virtual const bool &	GetUseCachingOfBSplineWeights () const
virtual void	UseCachingOfBSplineWeightsOn ()
virtual void	UseCachingOfBSplineWeightsOff ()
virtual MultiThreaderType *	GetModifiableThreader ()
virtual const MultiThreaderType *	GetThreader () const
const TransformPointer *	GetThreaderTransform ()
Public Member Functions inherited from itk::SingleValuedCostFunction
virtual void	GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const =0
virtual MeasureType	GetValue (const ParametersType &parameters) const =0
virtual void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual LightObject::Pointer	CreateAnother () const override
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary ()
const MetaDataDictionary &	GetMetaDataDictionary () const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const override
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int) override
virtual void	UnRegister () const noexceptoverride
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Protected Member Functions
virtual MeasureType	EvaluateMeasure (HistogramType &histogram) const override=0
void	FormTrainingHistogram ()
	CompareHistogramImageToImageMetric ()
virtual	~CompareHistogramImageToImageMetric () override
void	PrintSelf (std::ostream &os, Indent indent) const override
Protected Member Functions inherited from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >
void	ComputeHistogram (const TransformParametersType &parameters, HistogramType &histogram) const
void	ComputeHistogram (const TransformParametersType &parameters, unsigned int parameter, double step, HistogramType &histogram) const
void	CopyHistogram (HistogramType &target, HistogramType &source) const
	HistogramImageToImageMetric ()
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual	~HistogramImageToImageMetric () override
Protected Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
virtual void	ComputeImageDerivatives (const MovingImagePointType &mappedPoint, ImageDerivativesType &gradient, ThreadIdType threadId) const
void	GetValueAndDerivativeMultiThreadedInitiate () const
void	GetValueAndDerivativeMultiThreadedPostProcessInitiate () const
void	GetValueAndDerivativeMultiThreadedPreProcessInitiate () const
virtual void	GetValueAndDerivativeThread (ThreadIdType threadId) const
virtual void	GetValueAndDerivativeThreadPostProcess (ThreadIdType, bool) const
virtual void	GetValueAndDerivativeThreadPreProcess (ThreadIdType, bool) const
virtual bool	GetValueAndDerivativeThreadProcessSample (ThreadIdType, SizeValueType, const MovingImagePointType &, double, const ImageDerivativesType &) const
void	GetValueMultiThreadedInitiate () const
void	GetValueMultiThreadedPostProcessInitiate () const
void	GetValueMultiThreadedPreProcessInitiate () const
virtual void	GetValueThread (ThreadIdType threadId) const
virtual void	GetValueThreadPostProcess (ThreadIdType, bool) const
virtual void	GetValueThreadPreProcess (ThreadIdType, bool) const
virtual bool	GetValueThreadProcessSample (ThreadIdType, SizeValueType, const MovingImagePointType &, double) const
	ImageToImageMetric ()
virtual void	PreComputeTransformValues ()
virtual void	SampleFixedImageIndexes (FixedImageSampleContainer &samples) const
virtual void	SampleFixedImageRegion (FixedImageSampleContainer &samples) const
virtual void	SampleFullFixedImageRegion (FixedImageSampleContainer &samples) const
virtual void	SynchronizeTransforms () const
virtual void	TransformPoint (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleWithinSupportRegion, double &movingImageValue, ThreadIdType threadId) const
virtual void	TransformPointWithDerivatives (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleWithinSupportRegion, double &movingImageValue, ImageDerivativesType &gradient, ThreadIdType threadId) const
virtual	~ImageToImageMetric () override
Protected Member Functions inherited from itk::SingleValuedCostFunction
	SingleValuedCostFunction ()
virtual	~SingleValuedCostFunction () override
Protected Member Functions inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
	CostFunctionTemplate ()
virtual	~CostFunctionTemplate () override
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object () override
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Member Functions
	CompareHistogramImageToImageMetric (Self const &)
void	operator= (Self const &)

Private Attributes
FixedImageConstPointer	m_TrainingFixedImage
FixedImageRegionType	m_TrainingFixedImageRegion
HistogramPointerType	m_TrainingHistogram
InterpolatorPointer	m_TrainingInterpolator
MovingImageConstPointer	m_TrainingMovingImage
TransformPointer	m_TrainingTransform

Additional Inherited Members
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool flag)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()
Static Public Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static const unsigned int	MovingImageDimension = TMovingImage::ImageDimension
static const unsigned int	FixedImageDimension = TFixedImage::ImageDimension
Protected Types inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
typedef std::vector< bool >	BooleanArrayType
typedef BSplineInterpolateImageFunction < MovingImageType, CoordinateRepresentationType >	BSplineInterpolatorType
typedef FixedArray < SizeValueType, FixedImageType::ImageDimension >	BSplineParametersOffsetType
typedef BSplineTransformType::ParameterIndexArrayType	BSplineTransformIndexArrayType
typedef Array2D< IndexValueType >	BSplineTransformIndicesArrayType
typedef BSplineBaseTransform < CoordinateRepresentationType, FixedImageType::ImageDimension, itkGetStaticConstMacro(DeformationSplineOrder) >	BSplineTransformType
typedef Array2D< WeightsValueType >	BSplineTransformWeightsArrayType
typedef BSplineTransformType::WeightsType	BSplineTransformWeightsType
typedef CentralDifferenceImageFunction < MovingImageType, CoordinateRepresentationType >	DerivativeFunctionType
typedef std::vector < FixedImageSamplePoint >	FixedImageSampleContainer
typedef CovariantVector < double, itkGetStaticConstMacro(MovingImageDimension) >	ImageDerivativesType
typedef BSplineTransformIndexArrayType::ValueType	IndexValueType
typedef std::vector < MovingImagePointType >	MovingImagePointArrayType
typedef BSplineTransformWeightsType::ValueType	WeightsValueType
Static Protected Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeMultiThreaded (void *arg)
static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeMultiThreadedPostProcess (void *arg)
static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeMultiThreadedPreProcess (void *arg)
static ITK_THREAD_RETURN_TYPE	GetValueMultiThreaded (void *arg)
static ITK_THREAD_RETURN_TYPE	GetValueMultiThreadedPostProcess (void *arg)
static ITK_THREAD_RETURN_TYPE	GetValueMultiThreadedPreProcess (void *arg)
Protected Attributes inherited from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >
HistogramSizeType	m_HistogramSize
MeasurementVectorType	m_LowerBound
bool	m_LowerBoundSetByUser
MeasurementVectorType	m_UpperBound
double	m_UpperBoundIncreaseFactor
bool	m_UpperBoundSetByUser
Protected Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
BSplineInterpolatorType::Pointer	m_BSplineInterpolator
BSplineParametersOffsetType	m_BSplineParametersOffset
MovingImagePointArrayType	m_BSplinePreTransformPointsArray
BSplineTransformType::Pointer	m_BSplineTransform
BSplineTransformIndexArrayType	m_BSplineTransformIndices
BSplineTransformIndicesArrayType	m_BSplineTransformIndicesArray
BSplineTransformWeightsType	m_BSplineTransformWeights
BSplineTransformWeightsArrayType	m_BSplineTransformWeightsArray
bool	m_ComputeGradient
DerivativeFunctionType::Pointer	m_DerivativeCalculator
FixedImageConstPointer	m_FixedImage
FixedImageIndexContainer	m_FixedImageIndexes
FixedImageMaskConstPointer	m_FixedImageMask
FixedImageSampleContainer	m_FixedImageSamples
FixedImagePixelType	m_FixedImageSamplesIntensityThreshold
GradientImagePointer	m_GradientImage
InterpolatorPointer	m_Interpolator
bool	m_InterpolatorIsBSpline
MovingImageConstPointer	m_MovingImage
MovingImageMaskConstPointer	m_MovingImageMask
SizeValueType	m_NumberOfFixedImageSamples
SizeValueType	m_NumberOfParameters
SizeValueType	m_NumberOfPixelsCounted
ThreadIdType	m_NumberOfThreads
SizeValueType	m_NumBSplineWeights
int	m_RandomSeed
bool	m_ReseedIterator
MultiThreaderType::Pointer	m_Threader
BSplineTransformIndexArrayType *	m_ThreaderBSplineTransformIndices
BSplineTransformWeightsType *	m_ThreaderBSplineTransformWeights
unsigned int *	m_ThreaderNumberOfMovingImageSamples
MultiThreaderParameterType	m_ThreaderParameter
TransformPointer *	m_ThreaderTransform
TransformPointer	m_Transform
bool	m_TransformIsBSpline
bool	m_UseAllPixels
bool	m_UseCachingOfBSplineWeights
bool	m_UseFixedImageIndexes
bool	m_UseFixedImageSamplesIntensityThreshold
bool	m_UseSequentialSampling
BooleanArrayType	m_WithinBSplineSupportRegionArray
bool	m_WithinThreadPostProcess
bool	m_WithinThreadPreProcess
Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount
Static Protected Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static const unsigned int	DeformationSplineOrder = 3

Member Typedef Documentation

template<typename TFixedImage , typename TMovingImage >

typedef SmartPointer< const Self > itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer

Definition at line 64 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::DerivativeType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::DerivativeType

Definition at line 81 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::FixedImageConstPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointer

Definition at line 84 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::FixedImageRegionType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionType

Definition at line 101 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::FixedImageType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageType

Definition at line 82 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::GradientPixelType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GradientPixelType

Definition at line 78 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef HistogramType::AbsoluteFrequencyType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramAbsoluteFrequencyType

Definition at line 91 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef HistogramAbsoluteFrequencyType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramFrequencyType

Definition at line 92 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef HistogramType::Iterator itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramIteratorType

Definition at line 94 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef HistogramType::MeasurementVectorType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramMeasurementVectorType

Definition at line 90 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef HistogramType::Pointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramPointerType

Definition at line 95 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::HistogramSizeType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramSizeType

Definition at line 89 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::HistogramType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramType

Definition at line 88 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::InterpolatorPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorPointer

Definition at line 98 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::InterpolatorType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType

Definition at line 97 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::MeasureType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::MeasureType

Definition at line 80 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::MovingImageConstPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointer

Definition at line 86 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::MovingImageType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageType

Definition at line 83 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef SmartPointer< Self > itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Pointer

Definition at line 63 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::RealType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::RealType

Types transferred from the base class

Definition at line 68 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef CompareHistogramImageToImageMetric itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Self

Standard class typedefs.

Definition at line 61 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef HistogramImageToImageMetric< TFixedImage, TMovingImage > itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Superclass

Definition at line 62 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef TransformType::ConstPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformConstPointer

Definition at line 74 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::TransformJacobianType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianType

Definition at line 77 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::TransformParametersType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformParametersType

Definition at line 76 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::TransformPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformPointer

Definition at line 73 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::TransformType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformType

Definition at line 72 of file itkCompareHistogramImageToImageMetric.h.

Constructor & Destructor Documentation

template<typename TFixedImage , typename TMovingImage >

itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::CompareHistogramImageToImageMetric ( )

protected

Constructor is protected to ensure that New() function is used to create instances.

template<typename TFixedImage , typename TMovingImage >

virtual itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::~CompareHistogramImageToImageMetric ( )

inlineoverrideprotectedvirtual

Constructor is protected to ensure that New() function is used to create instances.

Definition at line 143 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::CompareHistogramImageToImageMetric ( Self const &  )

private

Member Function Documentation

template<typename TFixedImage , typename TMovingImage >

virtual MeasureType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::EvaluateMeasure ( HistogramType &  histogram ) const

overrideprotectedpure virtual

Evaluates the comparison histogram metric. All sub-classes must re-implement method.

Implements itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.

Implemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FormTrainingHistogram ( )

protected

Form the Histogram for the Training data

template<typename TFixedImage , typename TMovingImage >

virtual InterpolatorType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetModifiableTrainingInterpolator ( )

virtual

Get/Set the Interpolator.

template<typename TFixedImage , typename TMovingImage >

virtual TransformType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetModifiableTrainingTransform ( )

virtual

Get/Set the Training Transform.

template<typename TFixedImage , typename TMovingImage >

virtual const char* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

unsigned int itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfParameters ( void  ) const

inlineoverridevirtual

Return the number of parameters required by the Transform

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 132 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

virtual const FixedImageRegionType& itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingFixedImageRegion ( ) const

virtual

Get/Set the region over which the training histogram will be computed

template<typename TFixedImage , typename TMovingImage >

virtual const HistogramPointerType& itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingHistogram ( ) const

virtual

Get/Set the histogram to be used in the metric calculation

template<typename TFixedImage , typename TMovingImage >

virtual const InterpolatorType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingInterpolator ( ) const

virtual

Get/Set the Interpolator.

template<typename TFixedImage , typename TMovingImage >

virtual const MovingImageType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingMovingImage ( ) const

virtual

Get/Set the Training Moving Image.

template<typename TFixedImage , typename TMovingImage >

virtual const TransformType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingTransform ( ) const

virtual

Get/Set the Training Transform.

template<typename TFixedImage , typename TMovingImage >

void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Initialize ( )

overridevirtual

Forms the histogram of the training images to prepare to evaluate the metric. Must set all parameters first.

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::operator= ( Self const &  )

private

template<typename TFixedImage , typename TMovingImage >

void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotectedvirtual

Constructor is protected to ensure that New() function is used to create instances.

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingFixedImage ( const FixedImageType *  _arg )

virtual

Get/Set the Training Fixed Image.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingFixedImageRegion ( FixedImageRegionType  _arg )

virtual

Get/Set the region over which the training histogram will be computed

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingHistogram ( HistogramPointerType  _arg )

virtual

Get/Set the histogram to be used in the metric calculation

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingInterpolator ( InterpolatorType *  _arg )

virtual

Get/Set the Interpolator.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingMovingImage ( const MovingImageType *  _arg )

virtual

Get/Set the Training Moving Image.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingTransform ( TransformType *  _arg )

virtual

Get/Set the Training Transform.

Member Data Documentation

template<typename TFixedImage , typename TMovingImage >

FixedImageConstPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingFixedImage

private

Definition at line 159 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

FixedImageRegionType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingFixedImageRegion

private

Definition at line 163 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

HistogramPointerType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingHistogram

private

Definition at line 164 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

InterpolatorPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingInterpolator

private

Definition at line 162 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

MovingImageConstPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingMovingImage

private

Definition at line 160 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

TransformPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingTransform

private

Definition at line 161 of file itkCompareHistogramImageToImageMetric.h.

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The documentation for this class was generated from the following file:

• itkCompareHistogramImageToImageMetric.h