itk::DiffusionTensor3D< TComponent > Class Template Reference

#include <itkDiffusionTensor3D.h>

Inheritance diagram for itk::DiffusionTensor3D< TComponent >:

Collaboration diagram for itk::DiffusionTensor3D< TComponent >:

Detailed Description

template<typename TComponent>
class itk::DiffusionTensor3D< TComponent >

Represent a diffusion tensor as used in DTI images.

This class implements a 3D symmetric tensor as it is used for representing diffusion of water molecules in Diffusion Tensor Images.

This class derives from the SymmetricSecondRankTensor, inheriting most of the Tensor-related behavior. At this level we add the methods that are specific to 3D and that are closely related to the concept of diffusion.

Author

Jeffrey Duda from School of Engineering at University of Pennsylvania

Torsten Rohlfing from SRI International Neuroscience Program.

This class was mostly based on files that Jeffrey Duda, Torsten Rohlfing and Martin Styner contributed to the ITK users list during a discussion on support for DiffusionTensorImages. A discussion on the design of this class can be found in the WIKI pages of NAMIC:

http://www.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:ITK-DiffusionTensorPixelType

Note

This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on the National Centers for Biomedical Computing can be obtained from http://commonfund.nih.gov/bioinformatics.

Contributions by Torsten Rohlfing were funded by the following NIH grants

Alcohol, HIV and the Brain, NIAAA AA12999, PI: A. Pfefferbaum

Normal Aging of Brain Structure and Function NIA AG 17919, PI: E.V. Sullivan.

References

E. R. Melhem, S. Mori, G. Mukundan, M. A. Kraut, M. G. Pomper, and P. C. M. van Zijl, "Diffusion tensor MR imaging of the brain and white matter tractography," Am. J. Roentgenol., vol. 178, pp. 3-16, 2002.

See Also

SymmetricSecondRankTensor

Definition at line 79 of file itkDiffusionTensor3D.h.

Public Types
typedef Superclass::AccumulateValueType	AccumulateValueType
typedef Superclass::ComponentArrayType	ComponentArrayType
typedef Superclass::ComponentType	ComponentType
typedef Superclass::EigenValuesArrayType	EigenValuesArrayType
typedef Superclass::EigenVectorsMatrixType	EigenVectorsMatrixType
typedef Superclass::RealValueType	RealValueType
typedef DiffusionTensor3D	Self
typedef SymmetricSecondRankTensor < TComponent, 3 >	Superclass
typedef Superclass::ValueType	ValueType
Public Types inherited from itk::SymmetricSecondRankTensor< TComponent, 3 >
typedef NumericTraits < ValueType >::RealType	AccumulateValueType
typedef FixedArray< TComponent, itkGetStaticConstMacro(InternalDimension) >	BaseArray
typedef ComponentType	ComponentArrayType [itkGetStaticConstMacro(InternalDimension)]
typedef TComponent	ComponentType
typedef FixedArray< TComponent, NDimension >	EigenValuesArrayType
typedef Matrix< TComponent, NDimension, NDimension >	EigenVectorsMatrixType
typedef Matrix< TComponent, NDimension, NDimension >	MatrixType
typedef NumericTraits < ValueType >::RealType	RealValueType
typedef SymmetricSecondRankTensor	Self
typedef FixedArray< TComponent, NDimension *(NDimension+1)/2 >	Superclass
typedef SymmetricEigenAnalysis < MatrixType, EigenValuesArrayType, EigenVectorsMatrixType >	SymmetricEigenAnalysisType
typedef Superclass::ValueType	ValueType
Public Types inherited from itk::FixedArray< TComponent, NDimension *(NDimension+1)/2 >
typedef ValueType	CArray [VLength]
typedef const ValueType *	const_pointer
typedef const ValueType &	const_reference
typedef const ValueType *	ConstIterator
typedef ValueType *	Iterator
typedef ValueType *	pointer
typedef ValueType &	reference
typedef unsigned int	SizeType
typedef TComponent	ValueType

Public Member Functions
	DiffusionTensor3D ()
template<typename TCoordRepB >
	DiffusionTensor3D (const DiffusionTensor3D< TCoordRepB > &pa)
RealValueType	GetFractionalAnisotropy () const
RealValueType	GetInnerScalarProduct () const
RealValueType	GetRelativeAnisotropy () const
AccumulateValueType	GetTrace () const
Self &	operator= (const Superclass &r)
Self &	operator= (const ComponentType &r)
Self &	operator= (const ComponentArrayType r)
	DiffusionTensor3D (const Superclass &r)
	DiffusionTensor3D (const ComponentType &r)
	DiffusionTensor3D (const ComponentArrayType r)
template<typename TCoordRepB >
Self &	operator= (const DiffusionTensor3D< TCoordRepB > &pa)
Public Member Functions inherited from itk::SymmetricSecondRankTensor< TComponent, 3 >
void	ComputeEigenAnalysis (EigenValuesArrayType &eigenValues, EigenVectorsMatrixType &eigenVectors) const
void	ComputeEigenValues (EigenValuesArrayType &eigenValues) const
ComponentType	GetNthComponent (int c) const
AccumulateValueType	GetTrace () const
ValueType &	operator() (unsigned int row, unsigned int col)
const ValueType &	operator() (unsigned int row, unsigned int col) const
Self	operator* (const RealValueType &scalar) const
const Self &	operator*= (const RealValueType &scalar)
Self	operator+ (const Self &vec) const
const Self &	operator+= (const Self &vec)
Self	operator- (const Self &vec) const
const Self &	operator-= (const Self &vec)
Self	operator/ (const RealValueType &scalar) const
const Self &	operator/= (const RealValueType &scalar)
Self &	operator= (const ComponentType &r)
Self &	operator= (const ComponentArrayType r)
MatrixType	PostMultiply (const MatrixType &m) const
MatrixType	PreMultiply (const MatrixType &m) const
void	SetIdentity ()
void	SetNthComponent (int c, const ComponentType &v)
	SymmetricSecondRankTensor ()
	SymmetricSecondRankTensor (const ComponentType &r)
	SymmetricSecondRankTensor (const SymmetricSecondRankTensor< TCoordRepB, NDimension > &pa)
	SymmetricSecondRankTensor (const ComponentArrayType r)
Self &	operator= (const SymmetricSecondRankTensor< TCoordRepB, NDimension > &pa)
Self	Rotate (const Matrix< TMatrixValueType, NDimension, NDimension > &m) const
Self	Rotate (const vnl_matrix_fixed< TMatrixValueType, NDimension, NDimension > &m) const
Self	Rotate (const vnl_matrix< TMatrixValueType > &m) const
Public Member Functions inherited from itk::FixedArray< TComponent, NDimension *(NDimension+1)/2 >
Iterator	Begin ()
ConstIterator	Begin () const
Iterator	End ()
ConstIterator	End () const
void	Fill (const ValueType &)
	FixedArray (const TScalarValue *r)
ValueType *	GetDataPointer ()
const ValueType *	GetDataPointer () const
bool	operator!= (const FixedArray &r) const
FixedArray &	operator= (const ValueType r[VLength])
bool	operator== (const FixedArray &r) const
ReverseIterator	rBegin ()
ConstReverseIterator	rBegin () const
ReverseIterator	rEnd ()
ConstReverseIterator	rEnd () const
SizeType	Size () const
	FixedArray ()
	FixedArray (const ValueType r[VLength])
	FixedArray (const ValueType &r)
	FixedArray (const FixedArray< TFixedArrayValueType, VLength > &r)
FixedArray &	operator= (const FixedArray< TFixedArrayValueType, VLength > &r)
reference	operator[] (short index)
const_reference	operator[] (short index) const
reference	operator[] (unsigned short index)
const_reference	operator[] (unsigned short index) const
reference	operator[] (int index)
const_reference	operator[] (int index) const
reference	operator[] (unsigned int index)
const_reference	operator[] (unsigned int index) const
reference	operator[] (long index)
const_reference	operator[] (long index) const
reference	operator[] (unsigned long index)
const_reference	operator[] (unsigned long index) const
reference	operator[] (long long index)
const_reference	operator[] (long long index) const
reference	operator[] (unsigned long long index)
const_reference	operator[] (unsigned long long index) const
void	SetElement (unsigned short index, const_reference value)
const_reference	GetElement (unsigned short index) const

Additional Inherited Members
Static Public Member Functions inherited from itk::SymmetricSecondRankTensor< TComponent, 3 >
static unsigned int	GetNumberOfComponents ()
Static Public Member Functions inherited from itk::FixedArray< TComponent, NDimension *(NDimension+1)/2 >
static FixedArray	Filled (const ValueType &)
Static Public Attributes inherited from itk::SymmetricSecondRankTensor< TComponent, 3 >
static const unsigned int	Dimension
static const unsigned int	InternalDimension
Static Public Attributes inherited from itk::FixedArray< TComponent, NDimension *(NDimension+1)/2 >
static const unsigned int	Dimension
static const unsigned int	Length

Member Typedef Documentation

template<typename TComponent>

typedef Superclass::AccumulateValueType itk::DiffusionTensor3D< TComponent >::AccumulateValueType

Definition at line 94 of file itkDiffusionTensor3D.h.

template<typename TComponent>

typedef Superclass::ComponentArrayType itk::DiffusionTensor3D< TComponent >::ComponentArrayType

Definition at line 92 of file itkDiffusionTensor3D.h.

template<typename TComponent>

typedef Superclass::ComponentType itk::DiffusionTensor3D< TComponent >::ComponentType

Definition at line 88 of file itkDiffusionTensor3D.h.

template<typename TComponent>

typedef Superclass::EigenValuesArrayType itk::DiffusionTensor3D< TComponent >::EigenValuesArrayType

Definition at line 97 of file itkDiffusionTensor3D.h.

template<typename TComponent>

typedef Superclass::EigenVectorsMatrixType itk::DiffusionTensor3D< TComponent >::EigenVectorsMatrixType

Definition at line 98 of file itkDiffusionTensor3D.h.

template<typename TComponent>

typedef Superclass::RealValueType itk::DiffusionTensor3D< TComponent >::RealValueType

Definition at line 95 of file itkDiffusionTensor3D.h.

template<typename TComponent>

typedef DiffusionTensor3D itk::DiffusionTensor3D< TComponent >::Self

Standard class typedefs.

Definition at line 83 of file itkDiffusionTensor3D.h.

template<typename TComponent>

typedef SymmetricSecondRankTensor< TComponent, 3 > itk::DiffusionTensor3D< TComponent >::Superclass

Definition at line 84 of file itkDiffusionTensor3D.h.

template<typename TComponent>

typedef Superclass::ValueType itk::DiffusionTensor3D< TComponent >::ValueType

Propagating some typedef from the superclass

Definition at line 87 of file itkDiffusionTensor3D.h.

Constructor & Destructor Documentation

template<typename TComponent>

itk::DiffusionTensor3D< TComponent >::DiffusionTensor3D

(

)

Default Constructor.

template<typename TComponent>

itk::DiffusionTensor3D< TComponent >::DiffusionTensor3D

(

const Superclass &

r

)

Constructor with initialization.

template<typename TComponent>

itk::DiffusionTensor3D< TComponent >::DiffusionTensor3D

(

const ComponentType &

r

)

Constructor with initialization.

template<typename TComponent>

itk::DiffusionTensor3D< TComponent >::DiffusionTensor3D

(

const ComponentArrayType

r

)

Constructor with initialization.

template<typename TComponent>

template<typename TCoordRepB >

itk::DiffusionTensor3D< TComponent >::DiffusionTensor3D ( const DiffusionTensor3D< TCoordRepB > &  pa )

inline

Constructor to enable casting...

Definition at line 111 of file itkDiffusionTensor3D.h.

Member Function Documentation

template<typename TComponent>

RealValueType itk::DiffusionTensor3D< TComponent >::GetFractionalAnisotropy

(

)

const

Get the value of Fractional Anisotropy from the Tensor.

template<typename TComponent>

RealValueType itk::DiffusionTensor3D< TComponent >::GetInnerScalarProduct

(

)

const

Get the Inner Scalar Product from the Tensor.

template<typename TComponent>

RealValueType itk::DiffusionTensor3D< TComponent >::GetRelativeAnisotropy

(

)

const

Get the value of Relative Anisotropy from the Tensor.

template<typename TComponent>

AccumulateValueType itk::DiffusionTensor3D< TComponent >::GetTrace

(

)

const

Get Trace value

template<typename TComponent>

Self& itk::DiffusionTensor3D< TComponent >::operator=

(

const Superclass &

r

)

Pass-through assignment operator for the Array base class.

template<typename TComponent>

Self& itk::DiffusionTensor3D< TComponent >::operator=

(

const ComponentType &

r

)

template<typename TComponent>

Self& itk::DiffusionTensor3D< TComponent >::operator=

(

const ComponentArrayType

r

)

template<typename TComponent>

template<typename TCoordRepB >

Self& itk::DiffusionTensor3D< TComponent >::operator= ( const DiffusionTensor3D< TCoordRepB > &  pa )

inline

Templated Pass-through assignment for the Array base class.

Definition at line 123 of file itkDiffusionTensor3D.h.

References itk::SymmetricSecondRankTensor< TComponent, NDimension >::operator=().

---

The documentation for this class was generated from the following file:

• itkDiffusionTensor3D.h