itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement > Class Template Reference

#include <itkHistogramMatchingImageFilter.h>

Inheritance diagram for itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >:

Collaboration diagram for itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >:

Detailed Description

template<typename TInputImage, typename TOutputImage, typename THistogramMeasurement = typename TInputImage::PixelType>
class itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >

Normalize the grayscale values between two images by histogram matching.

HistogramMatchingImageFilter normalizes the grayscale values of a source image based on the grayscale values of a reference image. This filter uses a histogram matching technique where the histograms of the two images are matched only at a specified number of quantile values.

This filter was originally designed to normalize MR images of the same MR protocol and same body part. The algorithm works best if background pixels are excluded from both the source and reference histograms. A simple background exclusion method is to exclude all pixels whose grayscale values are smaller than the mean grayscale value. ThresholdAtMeanIntensityOn() switches on this simple background exclusion method.

The source image can be set via either SetInput() or SetSourceImage(). The reference image can be set via SetReferenceImage().

SetNumberOfHistogramLevels() sets the number of bins used when creating histograms of the source and reference images. SetNumberOfMatchPoints() governs the number of quantile values to be matched.

This filter assumes that both the source and reference are of the same type and that the input and output image type have the same number of dimension and have scalar pixel types.

REFERENCE

Laszlo G. Nyul, Jayaram K. Udupa, and Xuan Zhang, "New Variants of a Method of MRI Scale Standardization", IEEE Transactions on Medical Imaging, 19(2):143-150, 2000.

Examples:

Examples/RegistrationITKv3/DeformableRegistration1.cxx, Examples/RegistrationITKv3/DeformableRegistration10.cxx, Examples/RegistrationITKv3/DeformableRegistration11.cxx, Examples/RegistrationITKv3/DeformableRegistration16.cxx, Examples/RegistrationITKv3/DeformableRegistration17.cxx, Examples/RegistrationITKv3/DeformableRegistration2.cxx, Examples/RegistrationITKv3/DeformableRegistration3.cxx, Examples/RegistrationITKv3/DeformableRegistration5.cxx, Examples/RegistrationITKv3/DeformableRegistration9.cxx, Examples/RegistrationITKv4/DeformableRegistration1.cxx, Examples/RegistrationITKv4/DeformableRegistration10.cxx, Examples/RegistrationITKv4/DeformableRegistration11.cxx, Examples/RegistrationITKv4/DeformableRegistration16.cxx, Examples/RegistrationITKv4/DeformableRegistration17.cxx, Examples/RegistrationITKv4/DeformableRegistration2.cxx, Examples/RegistrationITKv4/DeformableRegistration3.cxx, Examples/RegistrationITKv4/DeformableRegistration5.cxx, and Examples/RegistrationITKv4/DeformableRegistration9.cxx.

Definition at line 68 of file itkHistogramMatchingImageFilter.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef HistogramType::Pointer	HistogramPointer
typedef Statistics::Histogram < THistogramMeasurement >	HistogramType
typedef Superclass::InputImageConstPointer	InputImageConstPointer
typedef Superclass::InputImagePointer	InputImagePointer
typedef Superclass::InputImageType	InputImageType
typedef InputImageType::PixelType	InputPixelType
typedef Superclass::OutputImagePointer	OutputImagePointer
typedef TOutputImage::RegionType	OutputImageRegionType
typedef Superclass::OutputImageType	OutputImageType
typedef OutputImageType::PixelType	OutputPixelType
typedef SmartPointer< Self >	Pointer
typedef HistogramMatchingImageFilter	Self
typedef ImageToImageFilter < TInputImage, TOutputImage >	Superclass
Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef TInputImage	InputImageType
typedef Superclass::OutputImagePixelType	OutputImagePixelType
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef SmartPointer< Self >	Pointer
typedef ImageToImageFilter	Self
typedef ImageSource< TOutputImage >	Superclass
Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef TOutputImage	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef ImageSource	Self
typedef ProcessObject	Superclass
Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer
typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType
typedef MultiThreader	MultiThreaderType
typedef std::vector < DataObjectIdentifierType >	NameArray
typedef SmartPointer< Self >	Pointer
typedef ProcessObject	Self
typedef Object	Superclass
Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef Object	Self
typedef LightObject	Superclass
Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const
virtual void	GenerateInputRequestedRegion () override
virtual const char *	GetNameOfClass () const
const InputImageType *	GetReferenceImage ()
void	SetReferenceImage (const InputImageType *reference)
void	SetSourceImage (const InputImageType *source)
const InputImageType *	GetSourceImage (void)
virtual void	SetNumberOfHistogramLevels (SizeValueType _arg)
virtual SizeValueType	GetNumberOfHistogramLevels () const
virtual void	SetNumberOfMatchPoints (SizeValueType _arg)
virtual SizeValueType	GetNumberOfMatchPoints () const
virtual void	SetThresholdAtMeanIntensity (bool _arg)
virtual bool	GetThresholdAtMeanIntensity () const
virtual void	ThresholdAtMeanIntensityOn ()
virtual void	ThresholdAtMeanIntensityOff ()
virtual HistogramType *	GetModifiableSourceHistogram ()
virtual const HistogramType *	GetSourceHistogram () const
virtual HistogramType *	GetModifiableReferenceHistogram ()
virtual const HistogramType *	GetReferenceHistogram () const
virtual HistogramType *	GetModifiableOutputHistogram ()
virtual const HistogramType *	GetOutputHistogram () const
Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageType *	GetInput () const
const InputImageType *	GetInput (unsigned int idx) const
virtual void	PopBackInput () override
virtual void	PopFrontInput () override
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
virtual void	SetInput (const InputImageType *image)
virtual void	SetInput (unsigned int, const TInputImage *image)
virtual void	SetCoordinateTolerance (double _arg)
virtual double	GetCoordinateTolerance () const
virtual void	SetDirectionTolerance (double _arg)
virtual double	GetDirectionTolerance () const
Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageType *	GetOutput ()
const OutputImageType *	GetOutput () const
virtual void	GraftOutput (DataObject *output)
virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
virtual ProcessObject::DataObjectPointer	MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData () const
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
NameArray	GetInputNames () const
DataObjectPointerArray	GetInputs ()
MultiThreaderType *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
DataObjectPointerArray	GetOutputs ()
virtual const float &	GetProgress () const
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float progress)
void	SetProgress (float progress)
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag () const
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads () const
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary ()
const MetaDataDictionary &	GetMetaDataDictionary () const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const override
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int) override
virtual void	UnRegister () const noexceptoverride
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool flag)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()

Static Public Attributes
static const unsigned int	ImageDimension = TInputImage::ImageDimension
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int	InputImageDimension = TInputImage::ImageDimension
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension
Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Protected Member Functions
void	AfterThreadedGenerateData () override
void	BeforeThreadedGenerateData () override
void	ComputeMinMaxMean (const InputImageType *image, THistogramMeasurement &minValue, THistogramMeasurement &maxValue, THistogramMeasurement &meanValue)
void	ConstructHistogram (const InputImageType *image, HistogramType *histogram, const THistogramMeasurement minValue, const THistogramMeasurement maxValue)
	HistogramMatchingImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const override
void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId) override
virtual void	VerifyInputInformation () override
	~HistogramMatchingImageFilter () override
Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
	ImageToImageFilter ()
	~ImageToImageFilter () override
void	PushBackInput (const DataObject *input) override
void	PushFrontInput (const DataObject *input) override
Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AllocateOutputs ()
virtual void	GenerateData () override
virtual const ImageRegionSplitterBase *	GetImageRegionSplitter () const
	ImageSource ()
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
virtual	~ImageSource () override
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
void	AddOptionalInputName (const DataObjectIdentifierType &)
void	AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const
bool	IsIndexedInputName (const DataObjectIdentifierType &) const
bool	IsIndexedOutputName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const
DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyPreconditions ()
	~ProcessObject () override
DataObject *	GetInput (DataObjectPointerArraySizeType idx)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryInputName (void) const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryOutputName (void) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object () override
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Types
typedef vnl_vector< double >	GradientArrayType
typedef vnl_matrix< double >	TableType

Private Attributes
GradientArrayType	m_Gradients
double	m_LowerGradient
SizeValueType	m_NumberOfHistogramLevels
SizeValueType	m_NumberOfMatchPoints
HistogramPointer	m_OutputHistogram
OutputPixelType	m_OutputIntensityThreshold
THistogramMeasurement	m_OutputMaxValue
THistogramMeasurement	m_OutputMeanValue
THistogramMeasurement	m_OutputMinValue
TableType	m_QuantileTable
HistogramPointer	m_ReferenceHistogram
InputPixelType	m_ReferenceIntensityThreshold
THistogramMeasurement	m_ReferenceMaxValue
THistogramMeasurement	m_ReferenceMeanValue
THistogramMeasurement	m_ReferenceMinValue
HistogramPointer	m_SourceHistogram
InputPixelType	m_SourceIntensityThreshold
THistogramMeasurement	m_SourceMaxValue
THistogramMeasurement	m_SourceMeanValue
THistogramMeasurement	m_SourceMinValue
bool	m_ThresholdAtMeanIntensity
double	m_UpperGradient

Additional Inherited Members
Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) >	InputToOutputRegionCopierType
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) >	OutputToInputRegionCopierType
Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime
bool	m_Updating
Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount

Member Typedef Documentation

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef SmartPointer< const Self > itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::ConstPointer

Definition at line 76 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef vnl_vector< double > itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GradientArrayType

private

Definition at line 229 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef HistogramType::Pointer itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::HistogramPointer

Definition at line 107 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef Statistics::Histogram< THistogramMeasurement > itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::HistogramType

Histogram related typedefs.

Definition at line 106 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef Superclass::InputImageConstPointer itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::InputImageConstPointer

Definition at line 97 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef Superclass::InputImagePointer itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::InputImagePointer

Definition at line 96 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef Superclass::InputImageType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::InputImageType

Inherited typedefs.

Definition at line 95 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef InputImageType::PixelType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::InputPixelType

Pixel related typedefs.

Definition at line 102 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef Superclass::OutputImagePointer itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::OutputImagePointer

Definition at line 99 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef TOutputImage::RegionType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::OutputImageRegionType

Typedef to describe the output image region type.

Definition at line 92 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef Superclass::OutputImageType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::OutputImageType

Definition at line 98 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef OutputImageType::PixelType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::OutputPixelType

Definition at line 103 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef SmartPointer< Self > itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::Pointer

Definition at line 75 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef HistogramMatchingImageFilter itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::Self

Standard class typedefs.

Definition at line 73 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef ImageToImageFilter< TInputImage, TOutputImage > itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::Superclass

Definition at line 74 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

typedef vnl_matrix< double > itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::TableType

private

Definition at line 226 of file itkHistogramMatchingImageFilter.h.

Constructor & Destructor Documentation

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::HistogramMatchingImageFilter ( )

protected

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::~HistogramMatchingImageFilter ( )

inlineoverrideprotected

Definition at line 173 of file itkHistogramMatchingImageFilter.h.

Member Function Documentation

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::AfterThreadedGenerateData ( void  )

overrideprotectedvirtual

If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Reimplemented from itk::ImageSource< TOutputImage >.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::BeforeThreadedGenerateData ( void  )

overrideprotectedvirtual

If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Reimplemented from itk::ImageSource< TOutputImage >.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::ComputeMinMaxMean ( const InputImageType *  image, THistogramMeasurement &  minValue, THistogramMeasurement &  maxValue, THistogramMeasurement &  meanValue  )

protected

Compute min, max and mean of an image.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::ConstructHistogram ( const InputImageType *  image, HistogramType *  histogram, const THistogramMeasurement  minValue, const THistogramMeasurement  maxValue  )

protected

Construct a histogram from an image.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual::itk::LightObject::Pointer itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GenerateInputRequestedRegion ( )

overridevirtual

This filter requires all of the input to be in the buffer.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual HistogramType* itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GetModifiableOutputHistogram ( )

virtual

Methods to get the histograms of the source, reference, and output. Objects are only valid after Update() has been called on this filter.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual HistogramType* itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GetModifiableReferenceHistogram ( )

virtual

Methods to get the histograms of the source, reference, and output. Objects are only valid after Update() has been called on this filter.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual HistogramType* itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GetModifiableSourceHistogram ( )

virtual

Methods to get the histograms of the source, reference, and output. Objects are only valid after Update() has been called on this filter.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual const char* itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual SizeValueType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GetNumberOfHistogramLevels ( ) const

virtual

Set/Get the number of histogram levels used.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual SizeValueType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GetNumberOfMatchPoints ( ) const

virtual

Set/Get the number of match points used.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual const HistogramType* itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GetOutputHistogram ( ) const

virtual

Methods to get the histograms of the source, reference, and output. Objects are only valid after Update() has been called on this filter.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual const HistogramType* itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GetReferenceHistogram ( ) const

virtual

Methods to get the histograms of the source, reference, and output. Objects are only valid after Update() has been called on this filter.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

const InputImageType* itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GetReferenceImage

(

)

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual const HistogramType* itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GetSourceHistogram ( ) const

virtual

Methods to get the histograms of the source, reference, and output. Objects are only valid after Update() has been called on this filter.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

const InputImageType* itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GetSourceImage ( void  )

inline

Set/Get the source image.

Definition at line 112 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual bool itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::GetThresholdAtMeanIntensity ( ) const

virtual

Set/Get the threshold at mean intensity flag. If true, only source (reference) pixels which are greater than the mean source (reference) intensity is used in the histogram matching. If false, all pixels are used.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

static Pointer itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::New ( )

static

Method for creation through the object factory.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::SetNumberOfHistogramLevels ( SizeValueType  _arg )

virtual

Set/Get the number of histogram levels used.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::SetNumberOfMatchPoints ( SizeValueType  _arg )

virtual

Set/Get the number of match points used.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::SetReferenceImage

(

const InputImageType *

reference

)

Set/Get the reference image.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::SetSourceImage ( const InputImageType *  source )

inline

Set/Get the source image.

Definition at line 110 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::SetThresholdAtMeanIntensity ( bool  _arg )

virtual

Set/Get the threshold at mean intensity flag. If true, only source (reference) pixels which are greater than the mean source (reference) intensity is used in the histogram matching. If false, all pixels are used.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::ThreadedGenerateData ( const OutputImageRegionType &  outputRegionForThread, ThreadIdType  threadId  )

overrideprotectedvirtual

If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). This superclass will automatically split the output image into a number of pieces, spawn multiple threads, and call ThreadedGenerateData() in each thread. Prior to spawning threads, the BeforeThreadedGenerateData() method is called. After all the threads have completed, the AfterThreadedGenerateData() method is called. If an image processing filter cannot support threading, that filter should provide an implementation of the GenerateData() method instead of providing an implementation of ThreadedGenerateData(). If a filter provides a GenerateData() method as its implementation, then the filter is responsible for allocating the output data. If a filter provides a ThreadedGenerateData() method as its implementation, then the output memory will allocated automatically by this superclass. The ThreadedGenerateData() method should only produce the output specified by "outputThreadRegion" parameter. ThreadedGenerateData() cannot write to any other portion of the output image (as this is responsibility of a different thread).

See Also

GenerateData(), SplitRequestedRegion()

Reimplemented from itk::ImageSource< TOutputImage >.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::ThresholdAtMeanIntensityOff ( )

virtual

Set/Get the threshold at mean intensity flag. If true, only source (reference) pixels which are greater than the mean source (reference) intensity is used in the histogram matching. If false, all pixels are used.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::ThresholdAtMeanIntensityOn ( )

virtual

Set/Get the threshold at mean intensity flag. If true, only source (reference) pixels which are greater than the mean source (reference) intensity is used in the histogram matching. If false, all pixels are used.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

virtual void itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::VerifyInputInformation ( )

inlineoverrideprotectedvirtual

Override VeriyInputInformation() since this filter does not expect the input images to occupy the same physical space.

See Also

ProcessObject::VerifyInputInformation

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 188 of file itkHistogramMatchingImageFilter.h.

Member Data Documentation

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

const unsigned int itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::ImageDimension = TInputImage::ImageDimension

static

ImageDimension enumeration.

Definition at line 86 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

GradientArrayType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_Gradients

private

Definition at line 230 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

double itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_LowerGradient

private

Definition at line 231 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

SizeValueType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_NumberOfHistogramLevels

private

Definition at line 202 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

SizeValueType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_NumberOfMatchPoints

private

Definition at line 205 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

HistogramPointer itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_OutputHistogram

private

Definition at line 224 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

OutputPixelType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_OutputIntensityThreshold

private

Definition at line 210 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

THistogramMeasurement itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_OutputMaxValue

private

Definition at line 219 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

THistogramMeasurement itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_OutputMeanValue

private

Definition at line 220 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

THistogramMeasurement itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_OutputMinValue

private

Definition at line 218 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

TableType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_QuantileTable

private

Definition at line 227 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

HistogramPointer itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_ReferenceHistogram

private

Definition at line 223 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

InputPixelType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_ReferenceIntensityThreshold

private

Definition at line 209 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

THistogramMeasurement itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_ReferenceMaxValue

private

Definition at line 216 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

THistogramMeasurement itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_ReferenceMeanValue

private

Definition at line 217 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

THistogramMeasurement itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_ReferenceMinValue

private

Definition at line 215 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

HistogramPointer itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_SourceHistogram

private

Definition at line 222 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

InputPixelType itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_SourceIntensityThreshold

private

Definition at line 208 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

THistogramMeasurement itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_SourceMaxValue

private

Definition at line 213 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

THistogramMeasurement itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_SourceMeanValue

private

Definition at line 214 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

THistogramMeasurement itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_SourceMinValue

private

Definition at line 212 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

bool itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_ThresholdAtMeanIntensity

private

Definition at line 206 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

double itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::m_UpperGradient

private

Definition at line 232 of file itkHistogramMatchingImageFilter.h.

template<typename TInputImage , typename TOutputImage , typename THistogramMeasurement = typename TInputImage::PixelType>

const unsigned int itk::HistogramMatchingImageFilter< TInputImage, TOutputImage, THistogramMeasurement >::OutputImageDimension = TOutputImage::ImageDimension

static

ImageDimension enumeration.

Definition at line 88 of file itkHistogramMatchingImageFilter.h.

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The documentation for this class was generated from the following file:

• itkHistogramMatchingImageFilter.h