itk::MRCHeaderObject Class Reference

#include <itkMRCHeaderObject.h>

Inheritance diagram for itk::MRCHeaderObject:

Collaboration diagram for itk::MRCHeaderObject:

Detailed Description

This class is a light wrapper for a couple of plain old data structures, so that they can be utilized in a MetaDataDictionary.

The class is designed to be intialized from a chuck of bytes that are read in from a file. Verification is performed to ensure that the bytes appear to be the correct format for the headers.

The POD structures a publicly avaible without access methods.

This code was contributed in the Insight Journal paper: "A Streaming IO Base Class and Support for Streaming the MRC and VTK File Format" by Lowekamp B., Chen D. http://www.insight-journal.org/browse/publication/729 https://hdl.handle.net/10380/3171

See Also

MetaDataDictionary

Definition at line 48 of file itkMRCHeaderObject.h.

Classes
struct	FeiExtendedHeader
struct	Header

Public Types
enum	{   MRCHEADER_MODE_UINT8 = 0,   MRCHEADER_MODE_IN16 = 1,   MRCHEADER_MODE_FLOAT = 2,   MRCHEADER_MODE_COMPLEX_INT16 = 3,   MRCHEADER_MODE_COMPLEX_FLOAT = 4,   MRCHEADER_MODE_UINT16 = 6,   MRCHEADER_MODE_RGB_BYTE = 16 }
enum	{   MRCHEADER_MAP_X = 1,   MRCHEADER_MAP_Y = 2,   MRCHEADER_MAP_Z = 3 }
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef MRCHeaderObject	Self
typedef LightObject	Superclass
Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const
void	DeepCopy (ConstPointer h)
SizeValueType	GetExtendedHeaderSize () const
const Header &	GetHeader () const
SizeValueType	GetHeaderSize (void) const
virtual const char *	GetNameOfClass () const
bool	IsOriginalHeaderBigEndian () const
bool	SetExtendedHeader (const void *buffer)
bool	SetHeader (const Header *buffer)
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const
virtual void	Register () const
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const noexcept

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()

Public Attributes
Header	m_Header

Protected Member Functions
	MRCHeaderObject ()
virtual void	PrintSelf (std::ostream &os, Indent indent) const override
void	swapHeader (bool bigEndian)
	~MRCHeaderObject () override
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Attributes
bool	m_BigEndianHeader
FeiExtendedHeader *	m_ExtendedFeiHeader
void *	m_ExtendedHeader
SizeValueType	m_ExtendedHeaderSize

Additional Inherited Members
Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount

Member Typedef Documentation

typedef SmartPointer< const Self > itk::MRCHeaderObject::ConstPointer

Definition at line 56 of file itkMRCHeaderObject.h.

typedef SmartPointer< Self > itk::MRCHeaderObject::Pointer

Definition at line 55 of file itkMRCHeaderObject.h.

typedef MRCHeaderObject itk::MRCHeaderObject::Self

Standard class typedefs.

Definition at line 53 of file itkMRCHeaderObject.h.

typedef LightObject itk::MRCHeaderObject::Superclass

Definition at line 54 of file itkMRCHeaderObject.h.

Member Enumeration Documentation

anonymous enum

pixel type enumeration

Enumerator
MRCHEADER_MODE_UINT8
MRCHEADER_MODE_IN16
MRCHEADER_MODE_FLOAT
MRCHEADER_MODE_COMPLEX_INT16
MRCHEADER_MODE_COMPLEX_FLOAT
MRCHEADER_MODE_UINT16
MRCHEADER_MODE_RGB_BYTE

Definition at line 219 of file itkMRCHeaderObject.h.

anonymous enum

map enumeration

Enumerator
MRCHEADER_MAP_X
MRCHEADER_MAP_Y
MRCHEADER_MAP_Z

Definition at line 228 of file itkMRCHeaderObject.h.

Constructor & Destructor Documentation

itk::MRCHeaderObject::MRCHeaderObject ( )

protected

itk::MRCHeaderObject::~MRCHeaderObject ( )

overrideprotected

Member Function Documentation

virtual::itk::LightObject::Pointer itk::MRCHeaderObject::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

void itk::MRCHeaderObject::DeepCopy

(

ConstPointer

h

)

SizeValueType itk::MRCHeaderObject::GetExtendedHeaderSize

(

)

const

the expected number of bytes in the extended header, this is only valid after a successful call to SetHeader.

const Header& itk::MRCHeaderObject::GetHeader

(

)

const

SizeValueType itk::MRCHeaderObject::GetHeaderSize ( void  ) const

inline

the expected number of bytes in the header

Definition at line 272 of file itkMRCHeaderObject.h.

virtual const char* itk::MRCHeaderObject::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::LightObject.

bool itk::MRCHeaderObject::IsOriginalHeaderBigEndian

(

)

const

returns true if the original header from SetHeader was big endian.

static Pointer itk::MRCHeaderObject::New ( )

static

Method for creation through the object factory.

virtual void itk::MRCHeaderObject::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotectedvirtual

Prints loads of information from the header

Reimplemented from itk::LightObject.

bool itk::MRCHeaderObject::SetExtendedHeader

(

const void *

buffer

)

After SetHeader is called GetExtendedHeaderSize contains the extected size of the buffer argument. This buffer is expected to be the bytes which follow the header in the file.

The return value indicates if the extended header buffer is valid and known. If false is returned then extended header information is not available.

bool itk::MRCHeaderObject::SetHeader

(

const Header *

buffer

)

Parameters

buffer

is assumed to point to a 1024 block of memory which has the header

The return value indicates if buffer appears valid. If false is returned then the header member varible is in an undefined state.

If the byte order of the header then byte swapping will be performed.

void itk::MRCHeaderObject::swapHeader ( bool  bigEndian )

protected

Methods to fix the order of a set header

Member Data Documentation

bool itk::MRCHeaderObject::m_BigEndianHeader

private

Definition at line 305 of file itkMRCHeaderObject.h.

FeiExtendedHeader* itk::MRCHeaderObject::m_ExtendedFeiHeader

private

Definition at line 303 of file itkMRCHeaderObject.h.

void* itk::MRCHeaderObject::m_ExtendedHeader

private

Definition at line 301 of file itkMRCHeaderObject.h.

SizeValueType itk::MRCHeaderObject::m_ExtendedHeaderSize

private

Definition at line 298 of file itkMRCHeaderObject.h.

Header itk::MRCHeaderObject::m_Header

Public avaiable data : FIXME : NO MEMBER VARIABLES SHOULD BE PUBLIC.

Definition at line 283 of file itkMRCHeaderObject.h.

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The documentation for this class was generated from the following file:

• itkMRCHeaderObject.h