#include <itkMRIBiasFieldCorrectionFilter.h>

Inheritance diagram for itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >:

Collaboration diagram for itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >:

Detailed Description

template<typename TImage, typename TImageMask, typename TBiasField>
class itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >

Represents a cost function for MRI bias field correction optimization.

This is a wrapping class which provides interfaces between images, the bias field, the internal energy function (CompositeValleyFunction), and the Optimizer.

This class is templated over the type of the input image (TImage), the image mask (which tells which pixels in the input image should be included for energy value calculation), and the bias field (TBiasField).

Definition at line 47 of file itkMRIBiasFieldCorrectionFilter.h.

Public Types
typedef TBiasField	BiasFieldType

typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DerivativeType	DerivativeType

typedef ImageType::PixelType	ImageElementType

typedef ImageType::IndexType	ImageIndexType

typedef ImageType::Pointer	ImagePointer

typedef ImageType::RegionType	ImageRegionType

typedef TImage	ImageType

typedef CompositeValleyFunction	InternalEnergyFunction

typedef MaskType::PixelType	MaskElementType

typedef MaskType::Pointer	MaskPointer

typedef TImageMask	MaskType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef unsigned int	SamplingFactorType [SpaceDimension]

typedef MRIBiasEnergyFunction	Self

typedef SingleValuedCostFunction	Superclass

Public Types inherited from itk::SingleValuedCostFunction
typedef SmartPointer< const Self >	ConstPointer

typedef Array < ParametersValueType >	DerivativeType

typedef double	MeasureType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef SingleValuedCostFunction	Self

typedef CostFunction	Superclass

Public Types inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
typedef SmartPointer< const Self >	ConstPointer

typedef OptimizerParameters < TInternalComputationValueType >	ParametersType

typedef TInternalComputationValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef CostFunctionTemplate	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const

void	GetDerivative (const ParametersType &, DerivativeType &) const override

double	GetEnergy0 (double diff)

virtual const char *	GetNameOfClass () const

virtual unsigned int	GetNumberOfParameters (void) const override

virtual MeasureType	GetValue (const ParametersType &parameters) const override

void	InitializeDistributions (Array< double > classMeans, Array< double > classSigmas)

void	SetBiasField (BiasFieldType *bias)

virtual void	SetImage (ImageType *_arg)

virtual void	SetMask (MaskType *_arg)

virtual void	SetRegion (ImageRegionType _arg)


void	SetSamplingFactors (SamplingFactorType factor)

Public Member Functions inherited from itk::SingleValuedCostFunction
virtual void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int) override

virtual void	UnRegister () const noexceptoverride

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Public Attributes
static const unsigned int	SpaceDimension = 3

Protected Member Functions
	MRIBiasEnergyFunction ()

virtual	~MRIBiasEnergyFunction () override

Protected Member Functions inherited from itk::SingleValuedCostFunction
	SingleValuedCostFunction ()

virtual	~SingleValuedCostFunction () override

Protected Member Functions inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
	CostFunctionTemplate ()

virtual void	PrintSelf (std::ostream &os, Indent indent) const override

virtual	~CostFunctionTemplate () override

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object () override

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Attributes
BiasFieldType *	m_BiasField

ImagePointer	m_Image

InternalEnergyFunction *	m_InternalEnergyFunction

MaskPointer	m_Mask

ImageRegionType	m_Region

SamplingFactorType	m_SamplingFactor

Additional Inherited Members
Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount