ITK  4.13.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Private Member Functions | Private Attributes | List of all members
itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage > Class Template Reference

#include <itkMultiScaleHessianBasedMeasureImageFilter.h>

+ Inheritance diagram for itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >:
+ Collaboration diagram for itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >:

Detailed Description

template<typename TInputImage, typename THessianImage, typename TOutputImage = TInputImage>
class itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >

A filter to enhance structures using Hessian eigensystem-based measures in a multiscale framework.

The filter evaluates a Hessian-based enhancement measure, such as vesselness or objectness, at different scale levels. The Hessian-based measure is computed from the Hessian image at each scale level and the best response is selected.

Minimum and maximum sigma value can be set using SetMinSigma and SetMaxSigma methods respectively. The number of scale levels is set using SetNumberOfSigmaSteps method. Exponentially distributed scale levels are computed within the bound set by the minimum and maximum sigma values

The filter computes a second output image (accessed by the GetScalesOutput method) containing the scales at which each pixel gave the best response.

This code was contributed in the Insight Journal paper: "Generalizing vesselness with respect to dimensionality and shape" by Antiga L. https://hdl.handle.net/1926/576 http://www.insight-journal.org/browse/publication/175

Author
Luca Antiga Ph.D. Medical Imaging Unit, Bioengineering Department, Mario Negri Institute, Italy.
See Also
HessianToObjectnessMeasureImageFilter
Hessian3DToVesselnessMeasureImageFilter
HessianSmoothed3DToVesselnessMeasureImageFilter
HessianRecursiveGaussianImageFilter
SymmetricEigenAnalysisImageFilter
SymmetricSecondRankTensor
Examples:
SphinxExamples/src/Nonunit/Review/SegmentBloodVesselsWithMultiScaleHessianBasedMeasure/Code.cxx.

Definition at line 67 of file itkMultiScaleHessianBasedMeasureImageFilter.h.

Public Types

typedef UpdateBufferType::ValueType BufferValueType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectPointer 
DataObjectPointer
 
typedef
ProcessObject::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef
HessianRecursiveGaussianImageFilter
< InputImageType,
HessianImageType
HessianFilterType
 
typedef THessianImage HessianImageType
 
typedef ImageToImageFilter
< HessianImageType,
OutputImageType
HessianToMeasureFilterType
 
typedef TInputImage InputImageType
 
typedef TInputImage::PixelType InputPixelType
 
typedef TOutputImage OutputImageType
 
typedef TOutputImage::PixelType OutputPixelType
 
typedef TOutputImage::RegionType OutputRegionType
 
typedef SmartPointer< SelfPointer
 
typedef Image< ScalesPixelType,
itkGetStaticConstMacro(ImageDimension) > 
ScalesImageType
 
typedef float ScalesPixelType
 
typedef
MultiScaleHessianBasedMeasureImageFilter 
Self
 
enum  SigmaStepMethodType {
  EquispacedSigmaSteps = 0,
  LogarithmicSigmaSteps = 1
}
 
typedef ImageToImageFilter
< TInputImage, TOutputImage > 
Superclass
 
typedef Image< double,
itkGetStaticConstMacro(ImageDimension) > 
UpdateBufferType
 
- Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TInputImage InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef SmartPointer< SelfPointer
 
typedef ImageToImageFilter Self
 
typedef ImageSource< TOutputImage > Superclass
 
- Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef ImageSource Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef MultiThreader MultiThreaderType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
const HessianImageTypeGetHessianOutput () const
 
virtual const char * GetNameOfClass () const
 
const ScalesImageTypeGetScalesOutput () const
 
void SetSigmaStepMethodToEquispaced ()
 
void SetSigmaStepMethodToLogarithmic ()
 
virtual void SetSigmaMinimum (double _arg)
 
virtual double GetSigmaMinimum () const
 
virtual void SetSigmaMaximum (double _arg)
 
virtual double GetSigmaMaximum () const
 
virtual void SetNumberOfSigmaSteps (unsigned int _arg)
 
virtual unsigned int GetNumberOfSigmaSteps () const
 
virtual void SetHessianToMeasureFilter (HessianToMeasureFilterType *_arg)
 
virtual
HessianToMeasureFilterType
GetModifiableHessianToMeasureFilter ()
 
virtual const
HessianToMeasureFilterType
GetHessianToMeasureFilter () const
 
virtual void SetNonNegativeHessianBasedMeasure (bool _arg)
 
virtual bool GetNonNegativeHessianBasedMeasure () const
 
virtual void NonNegativeHessianBasedMeasureOn ()
 
virtual void NonNegativeHessianBasedMeasureOff ()
 
virtual void SetSigmaStepMethod (SigmaStepMethodType _arg)
 
virtual SigmaStepMethodType GetSigmaStepMethod () const
 
virtual void SetGenerateScalesOutput (bool _arg)
 
virtual bool GetGenerateScalesOutput () const
 
virtual void GenerateScalesOutputOn ()
 
virtual void GenerateScalesOutputOff ()
 
virtual void SetGenerateHessianOutput (bool _arg)
 
virtual bool GetGenerateHessianOutput () const
 
virtual void GenerateHessianOutputOn ()
 
virtual void GenerateHessianOutputOff ()
 
- Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageTypeGetInput () const
 
const InputImageTypeGetInput (unsigned int idx) const
 
virtual void PopBackInput () override
 
virtual void PopFrontInput () override
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TInputImage *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageTypeGetOutput (unsigned int idx)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
OutputImageTypeGetOutput ()
 
const OutputImageTypeGetOutput () const
 
virtual void GraftOutput (DataObject *output)
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreaderTypeGetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
void SetProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) override
 
virtual void UnRegister () const noexceptoverride
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static const unsigned int ImageDimension = InputImageType ::ImageDimension
 
- Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int InputImageDimension = TInputImage::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 

Protected Member Functions

void EnlargeOutputRequestedRegion (DataObject *) override
 
void GenerateData () override
 
virtual DataObjectPointer MakeOutput (DataObjectPointerArraySizeType idx) override
 
 MultiScaleHessianBasedMeasureImageFilter ()
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
 ~MultiScaleHessianBasedMeasureImageFilter ()
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
virtual void GenerateInputRequestedRegion () override
 
 ImageToImageFilter ()
 
virtual void VerifyInputInformation () override
 
 ~ImageToImageFilter () override
 
void PushBackInput (const DataObject *input) override
 
void PushFrontInput (const DataObject *input) override
 
- Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void AfterThreadedGenerateData ()
 
virtual void AllocateOutputs ()
 
virtual void BeforeThreadedGenerateData ()
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter () const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual ~ImageSource () override
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
void AddOptionalInputName (const DataObjectIdentifierType &)
 
void AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject () override
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName (void) const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName (void) const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object () override
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Member Functions

void AllocateUpdateBuffer ()
 
double ComputeSigmaValue (int scaleLevel)
 
void UpdateMaximumResponse (double sigma)
 

Private Attributes

bool m_GenerateHessianOutput
 
bool m_GenerateScalesOutput
 
HessianFilterType::Pointer m_HessianFilter
 
HessianToMeasureFilterType::Pointer m_HessianToMeasureFilter
 
bool m_NonNegativeHessianBasedMeasure
 
unsigned int m_NumberOfSigmaSteps
 
double m_SigmaMaximum
 
double m_SigmaMinimum
 
SigmaStepMethodType m_SigmaStepMethod
 
UpdateBufferType::Pointer m_UpdateBuffer
 

Additional Inherited Members

- Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
 
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType
 
- Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const
ImageRegionSplitterBase
GetGlobalDefaultSplitter ()
 
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
AtomicInt< int > m_ReferenceCount
 

Member Typedef Documentation

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef UpdateBufferType::ValueType itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::BufferValueType
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef SmartPointer< const Self > itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::ConstPointer
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef Superclass::DataObjectPointer itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::DataObjectPointer
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef ProcessObject::DataObjectPointerArraySizeType itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::DataObjectPointerArraySizeType

This is overloaded to create the Scales and Hessian output images

Definition at line 181 of file itkMultiScaleHessianBasedMeasureImageFilter.h.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef HessianRecursiveGaussianImageFilter< InputImageType, HessianImageType > itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::HessianFilterType

Hessian computation filter.

Definition at line 97 of file itkMultiScaleHessianBasedMeasureImageFilter.h.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef THessianImage itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::HessianImageType
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef ImageToImageFilter< HessianImageType, OutputImageType > itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::HessianToMeasureFilterType
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef TInputImage itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::InputImageType
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef TInputImage::PixelType itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::InputPixelType
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef TOutputImage itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::OutputImageType
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef TOutputImage::PixelType itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::OutputPixelType
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef TOutputImage::RegionType itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::OutputRegionType
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef SmartPointer< Self > itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::Pointer
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef Image< ScalesPixelType, itkGetStaticConstMacro(ImageDimension) > itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::ScalesImageType
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef float itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::ScalesPixelType

Types for Scales image

Definition at line 93 of file itkMultiScaleHessianBasedMeasureImageFilter.h.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef MultiScaleHessianBasedMeasureImageFilter itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::Self

Standard class typedefs.

Definition at line 73 of file itkMultiScaleHessianBasedMeasureImageFilter.h.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef ImageToImageFilter< TInputImage, TOutputImage > itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::Superclass
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
typedef Image< double, itkGetStaticConstMacro(ImageDimension) > itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::UpdateBufferType

Update image buffer that holds the best objectness response. This is not redundant from the output image because the latter may not be of float type, which is required for the comparisons between responses at different scales.

Definition at line 102 of file itkMultiScaleHessianBasedMeasureImageFilter.h.

Member Enumeration Documentation

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
enum itk::MultiScaleHessianBasedMeasureImageFilter::SigmaStepMethodType
Enumerator
EquispacedSigmaSteps 
LogarithmicSigmaSteps 

Definition at line 147 of file itkMultiScaleHessianBasedMeasureImageFilter.h.

Constructor & Destructor Documentation

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::MultiScaleHessianBasedMeasureImageFilter ( )
protected
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::~MultiScaleHessianBasedMeasureImageFilter ( )
inlineprotected

Member Function Documentation

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::AllocateUpdateBuffer ( )
private
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
double itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::ComputeSigmaValue ( int  scaleLevel)
private
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual::itk::LightObject::Pointer itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::EnlargeOutputRequestedRegion ( DataObject )
overrideprotectedvirtual

Give the process object a chance to indictate that it will produce more output than it was requested to produce. For example, many imaging filters must compute the entire output at once or can only produce output in complete slices. Such filters cannot handle smaller requested regions. These filters must provide an implementation of this method, setting the output requested region to the size they will produce. By default, a process object does not modify the size of the output requested region.

Reimplemented from itk::ProcessObject.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GenerateData ( )
overrideprotectedvirtual

Generate Data

Reimplemented from itk::ImageSource< TOutputImage >.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GenerateHessianOutputOff ( )
virtual

Methods to turn on/off flag to generate an image with hessian values at each pixel for the best vesselness response

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GenerateHessianOutputOn ( )
virtual

Methods to turn on/off flag to generate an image with hessian values at each pixel for the best vesselness response

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GenerateScalesOutputOff ( )
virtual

Methods to turn on/off flag to generate an image with scale values at each pixel for the best vesselness response

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GenerateScalesOutputOn ( )
virtual

Methods to turn on/off flag to generate an image with scale values at each pixel for the best vesselness response

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual bool itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GetGenerateHessianOutput ( ) const
virtual

Methods to turn on/off flag to generate an image with hessian values at each pixel for the best vesselness response

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual bool itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GetGenerateScalesOutput ( ) const
virtual

Methods to turn on/off flag to generate an image with scale values at each pixel for the best vesselness response

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
const HessianImageType* itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GetHessianOutput ( ) const

Get the image containing the Hessian computed at the best response scale

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual const HessianToMeasureFilterType* itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GetHessianToMeasureFilter ( ) const
virtual

Set/Get HessianToMeasureFilter. This will be a filter that takes Hessian input image and produces enhanced output scalar image. The filter must derive from itk::ImageToImage filter

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual HessianToMeasureFilterType* itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GetModifiableHessianToMeasureFilter ( )
virtual

Set/Get HessianToMeasureFilter. This will be a filter that takes Hessian input image and produces enhanced output scalar image. The filter must derive from itk::ImageToImage filter

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual const char* itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GetNameOfClass ( ) const
virtual

Runtime information support.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual bool itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GetNonNegativeHessianBasedMeasure ( ) const
virtual

Methods to turn on/off flag to inform the filter that the Hessian-based measure is non-negative (classical measures like Sato's and Frangi's are), hence it has a minimum at zero. In this case, the update buffer is initialized at zero, and the output scale and Hessian are zero in case the Hessian-based measure returns zero for all scales. Otherwise, the minimum output scale and Hessian are the ones obtained at scale SigmaMinimum. On by default.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual unsigned int itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GetNumberOfSigmaSteps ( ) const
virtual

Set/Get macros for Number of Scales

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
const ScalesImageType* itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GetScalesOutput ( ) const

Get the image containing the scales at which each pixel gave the best response

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual double itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GetSigmaMaximum ( ) const
virtual

Set/Get macros for SigmaMax

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual double itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GetSigmaMinimum ( ) const
virtual

Set/Get macros for SigmaMin

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual SigmaStepMethodType itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::GetSigmaStepMethod ( ) const
virtual

Set/Get the method used to generate scale sequence (Equispaced or Logarithmic)

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual DataObjectPointer itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::MakeOutput ( DataObjectPointerArraySizeType  idx)
overrideprotectedvirtual

Make a DataObject of the correct type to used as the specified output. Every ProcessObject subclass must be able to create a DataObject that can be used as a specified output. This method is automatically called when DataObject::DisconnectPipeline() is called. DataObject::DisconnectPipeline, disconnects a data object from being an output of its current source. When the data object is disconnected, the ProcessObject needs to construct a replacement output data object so that the ProcessObject is in a valid state. So DataObject::DisconnectPipeline eventually calls ProcessObject::MakeOutput. Note that MakeOutput always returns a SmartPointer to a DataObject. If a subclass of ImageSource has multiple outputs of different types, then that class must provide an implementation of MakeOutput().

Reimplemented from itk::ImageSource< TOutputImage >.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
static Pointer itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::New ( )
static

Method for creation through the object factory.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::NonNegativeHessianBasedMeasureOff ( )
virtual

Methods to turn on/off flag to inform the filter that the Hessian-based measure is non-negative (classical measures like Sato's and Frangi's are), hence it has a minimum at zero. In this case, the update buffer is initialized at zero, and the output scale and Hessian are zero in case the Hessian-based measure returns zero for all scales. Otherwise, the minimum output scale and Hessian are the ones obtained at scale SigmaMinimum. On by default.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::NonNegativeHessianBasedMeasureOn ( )
virtual

Methods to turn on/off flag to inform the filter that the Hessian-based measure is non-negative (classical measures like Sato's and Frangi's are), hence it has a minimum at zero. In this case, the update buffer is initialized at zero, and the output scale and Hessian are zero in case the Hessian-based measure returns zero for all scales. Otherwise, the minimum output scale and Hessian are the ones obtained at scale SigmaMinimum. On by default.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::SetGenerateHessianOutput ( bool  _arg)
virtual

Methods to turn on/off flag to generate an image with hessian values at each pixel for the best vesselness response

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::SetGenerateScalesOutput ( bool  _arg)
virtual

Methods to turn on/off flag to generate an image with scale values at each pixel for the best vesselness response

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::SetHessianToMeasureFilter ( HessianToMeasureFilterType _arg)
virtual

Set/Get HessianToMeasureFilter. This will be a filter that takes Hessian input image and produces enhanced output scalar image. The filter must derive from itk::ImageToImage filter

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::SetNonNegativeHessianBasedMeasure ( bool  _arg)
virtual

Methods to turn on/off flag to inform the filter that the Hessian-based measure is non-negative (classical measures like Sato's and Frangi's are), hence it has a minimum at zero. In this case, the update buffer is initialized at zero, and the output scale and Hessian are zero in case the Hessian-based measure returns zero for all scales. Otherwise, the minimum output scale and Hessian are the ones obtained at scale SigmaMinimum. On by default.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::SetNumberOfSigmaSteps ( unsigned int  _arg)
virtual

Set/Get macros for Number of Scales

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::SetSigmaMaximum ( double  _arg)
virtual

Set/Get macros for SigmaMax

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::SetSigmaMinimum ( double  _arg)
virtual

Set/Get macros for SigmaMin

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
virtual void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::SetSigmaStepMethod ( SigmaStepMethodType  _arg)
virtual

Set/Get the method used to generate scale sequence (Equispaced or Logarithmic)

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::SetSigmaStepMethodToEquispaced ( )

Set equispaced sigma step method

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::SetSigmaStepMethodToLogarithmic ( )

Set logartihmic sigma step method

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
void itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::UpdateMaximumResponse ( double  sigma)
private

Member Data Documentation

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
const unsigned int itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::ImageDimension = InputImageType ::ImageDimension
static

Image dimension.

Definition at line 90 of file itkMultiScaleHessianBasedMeasureImageFilter.h.

template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
bool itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::m_GenerateHessianOutput
private
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
bool itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::m_GenerateScalesOutput
private
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
HessianFilterType::Pointer itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::m_HessianFilter
private
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
HessianToMeasureFilterType::Pointer itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::m_HessianToMeasureFilter
private
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
bool itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::m_NonNegativeHessianBasedMeasure
private
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
unsigned int itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::m_NumberOfSigmaSteps
private
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
double itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::m_SigmaMaximum
private
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
double itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::m_SigmaMinimum
private
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
SigmaStepMethodType itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::m_SigmaStepMethod
private
template<typename TInputImage , typename THessianImage , typename TOutputImage = TInputImage>
UpdateBufferType::Pointer itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::m_UpdateBuffer
private

The documentation for this class was generated from the following file: