ITK
4.13.0
Insight Segmentation and Registration Toolkit
|
#include <itkSliceBySliceImageFilter.h>
Apply a filter or a pipeline slice by slice on an image.
SliceBySliceImageFilter let the user apply a filter or a pipeline of filters on the slices of an image. The filters must work on images smaller of one dimension than the input and output images of the SliceBySliceImageFilter - if the SliceBySliceImageFilter work on 3D images, the filters used internally must work on 2D images.
The dimension along which the slices are extracted can be selected with SetDimension() and defaults to the last one.
SliceBySliceImageFilter takes the input and the output filters of a pipeline as parameter. They can be set with SetInputFilter() and SetOutputFilter(). The pipeline will be run once per slice.
If there is only one filter to apply to the slices of the input image, the SetFilter() method can be used to set the filter passed as parameter both as the input and as the output filter.
SliceBySliceImageFilter can take several images as input. In that case, the same number of slices will be passed to the input filter. If the output filter produce several output slices, SliceBySliceImageFilter produce the same number of output images. The input images are passed with the same input number to the input filter - if SetInput( 3, img ) is used on the SliceBySliceImageFilter the corresponding slice will be passed to the input filter with SetInput( 3, img ). See https://www.itk.org/pipermail/insight-users/2008-May/026112.html for an example of usage of that feature with MaskImageFilter.
The input requested region is enlarged to cover whole slices, but not in the slice direction - however, the internal pipeline only requests the output requested region for that slice (the requested region per slice is not enlarged to the whole slice unless done by the internal filters ).
The output images of SliceBySliceImageFilter must be of the same size than the input images. All the input images must be of the same pixel type. All the output images must be of the same pixel type.
This class was taken from the Insight Journal paper: https://hdl.handle.net/1926/368
Definition at line 81 of file itkSliceBySliceImageFilter.h.
Public Types | |
typedef SmartPointer< const Self > | ConstPointer |
typedef TInputImage::IndexType | IndexType |
typedef TInputFilter | InputFilterType |
typedef Superclass::InputImagePointer | InputImagePointer |
typedef TInputImage | InputImageType |
typedef InternalInputImageType::IndexType | InternalIndexType |
typedef TInternalInputImage | InternalInputImageType |
typedef InternalInputImageType::PixelType | InternalInputPixelType |
typedef InternalInputImageType::OffsetType | InternalOffsetType |
typedef TInternalOutputImage | InternalOutputImageType |
typedef InternalOutputImageType::PixelType | InternalOutputPixelType |
typedef InternalInputImageType::PointType | InternalPointType |
typedef InternalInputImageType::RegionType | InternalRegionType |
typedef InternalInputImageType::SizeType | InternalSizeType |
typedef InternalInputImageType::SpacingType | InternalSpacingType |
typedef TInputImage::OffsetType | OffsetType |
typedef TOutputFilter | OutputFilterType |
typedef TOutputImage | OutputImageType |
typedef TOutputImage::PixelType | OutputPixelType |
typedef TInputImage::PixelType | PixelType |
typedef SmartPointer< Self > | Pointer |
typedef TInputImage::RegionType | RegionType |
typedef SliceBySliceImageFilter | Self |
typedef TInputImage::SizeType | SizeType |
typedef ImageToImageFilter < TInputImage, TOutputImage > | Superclass |
Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef InputImageType::ConstPointer | InputImageConstPointer |
typedef InputImageType::PixelType | InputImagePixelType |
typedef InputImageType::Pointer | InputImagePointer |
typedef InputImageType::RegionType | InputImageRegionType |
typedef TInputImage | InputImageType |
typedef Superclass::OutputImagePixelType | OutputImagePixelType |
typedef Superclass::OutputImageRegionType | OutputImageRegionType |
typedef SmartPointer< Self > | Pointer |
typedef ImageToImageFilter | Self |
typedef ImageSource< TOutputImage > | Superclass |
Public Types inherited from itk::ImageSource< TOutputImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef Superclass::DataObjectIdentifierType | DataObjectIdentifierType |
typedef DataObject::Pointer | DataObjectPointer |
typedef Superclass::DataObjectPointerArraySizeType | DataObjectPointerArraySizeType |
typedef OutputImageType::PixelType | OutputImagePixelType |
typedef OutputImageType::Pointer | OutputImagePointer |
typedef OutputImageType::RegionType | OutputImageRegionType |
typedef TOutputImage | OutputImageType |
typedef SmartPointer< Self > | Pointer |
typedef ImageSource | Self |
typedef ProcessObject | Superclass |
Public Types inherited from itk::ProcessObject | |
typedef SmartPointer< const Self > | ConstPointer |
typedef DataObject::DataObjectIdentifierType | DataObjectIdentifierType |
typedef DataObject::Pointer | DataObjectPointer |
typedef std::vector < DataObjectPointer > | DataObjectPointerArray |
typedef DataObjectPointerArray::size_type | DataObjectPointerArraySizeType |
typedef MultiThreader | MultiThreaderType |
typedef std::vector < DataObjectIdentifierType > | NameArray |
typedef SmartPointer< Self > | Pointer |
typedef ProcessObject | Self |
typedef Object | Superclass |
Public Types inherited from itk::Object | |
typedef SmartPointer< const Self > | ConstPointer |
typedef SmartPointer< Self > | Pointer |
typedef Object | Self |
typedef LightObject | Superclass |
Public Types inherited from itk::LightObject | |
typedef SmartPointer< const Self > | ConstPointer |
typedef SmartPointer< Self > | Pointer |
typedef LightObject | Self |
Static Public Member Functions | |
static Pointer | New () |
Static Public Member Functions inherited from itk::Object | |
static bool | GetGlobalWarningDisplay () |
static void | GlobalWarningDisplayOff () |
static void | GlobalWarningDisplayOn () |
static Pointer | New () |
static void | SetGlobalWarningDisplay (bool flag) |
Static Public Member Functions inherited from itk::LightObject | |
static void | BreakOnError () |
static Pointer | New () |
Static Public Attributes | |
static const unsigned int | ImageDimension = TInputImage::ImageDimension |
static const unsigned int | InternalImageDimension = InternalInputImageType::ImageDimension |
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage > | |
static const unsigned int | InputImageDimension = TInputImage::ImageDimension |
static const unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
Static Public Attributes inherited from itk::ImageSource< TOutputImage > | |
static const unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
Private Attributes | |
unsigned int | m_Dimension |
InputFilterType::Pointer | m_InputFilter |
OutputFilterType::Pointer | m_OutputFilter |
IndexValueType | m_SliceIndex |
Additional Inherited Members | |
Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage > | |
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) > | InputToOutputRegionCopierType |
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) > | OutputToInputRegionCopierType |
Static Protected Member Functions inherited from itk::ImageSource< TOutputImage > | |
static const ImageRegionSplitterBase * | GetGlobalDefaultSplitter () |
static ITK_THREAD_RETURN_TYPE | ThreaderCallback (void *arg) |
Protected Attributes inherited from itk::ProcessObject | |
TimeStamp | m_OutputInformationMTime |
bool | m_Updating |
Protected Attributes inherited from itk::LightObject | |
AtomicInt< int > | m_ReferenceCount |
typedef SmartPointer< const Self > itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::ConstPointer |
Definition at line 89 of file itkSliceBySliceImageFilter.h.
typedef TInputImage::IndexType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::IndexType |
Definition at line 104 of file itkSliceBySliceImageFilter.h.
typedef TInputFilter itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InputFilterType |
Definition at line 111 of file itkSliceBySliceImageFilter.h.
typedef Superclass::InputImagePointer itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InputImagePointer |
Superclass typedefs.
Definition at line 92 of file itkSliceBySliceImageFilter.h.
typedef TInputImage itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InputImageType |
Image related typedefs.
Definition at line 98 of file itkSliceBySliceImageFilter.h.
typedef InternalInputImageType::IndexType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalIndexType |
Definition at line 117 of file itkSliceBySliceImageFilter.h.
typedef TInternalInputImage itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalInputImageType |
Definition at line 114 of file itkSliceBySliceImageFilter.h.
typedef InternalInputImageType::PixelType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalInputPixelType |
Definition at line 119 of file itkSliceBySliceImageFilter.h.
typedef InternalInputImageType::OffsetType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalOffsetType |
Definition at line 118 of file itkSliceBySliceImageFilter.h.
typedef TInternalOutputImage itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalOutputImageType |
Definition at line 123 of file itkSliceBySliceImageFilter.h.
typedef InternalOutputImageType::PixelType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalOutputPixelType |
Definition at line 124 of file itkSliceBySliceImageFilter.h.
typedef InternalInputImageType::PointType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalPointType |
Definition at line 121 of file itkSliceBySliceImageFilter.h.
typedef InternalInputImageType::RegionType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalRegionType |
Definition at line 115 of file itkSliceBySliceImageFilter.h.
typedef InternalInputImageType::SizeType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalSizeType |
Definition at line 116 of file itkSliceBySliceImageFilter.h.
typedef InternalInputImageType::SpacingType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalSpacingType |
Definition at line 120 of file itkSliceBySliceImageFilter.h.
typedef TInputImage::OffsetType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::OffsetType |
Definition at line 106 of file itkSliceBySliceImageFilter.h.
typedef TOutputFilter itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::OutputFilterType |
Definition at line 112 of file itkSliceBySliceImageFilter.h.
typedef TOutputImage itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::OutputImageType |
Definition at line 108 of file itkSliceBySliceImageFilter.h.
typedef TOutputImage::PixelType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::OutputPixelType |
Definition at line 109 of file itkSliceBySliceImageFilter.h.
typedef TInputImage::PixelType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::PixelType |
Definition at line 105 of file itkSliceBySliceImageFilter.h.
typedef SmartPointer< Self > itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::Pointer |
Definition at line 88 of file itkSliceBySliceImageFilter.h.
typedef TInputImage::RegionType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::RegionType |
Definition at line 102 of file itkSliceBySliceImageFilter.h.
typedef SliceBySliceImageFilter itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::Self |
Standard class typedefs.
Definition at line 86 of file itkSliceBySliceImageFilter.h.
typedef TInputImage::SizeType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::SizeType |
Definition at line 103 of file itkSliceBySliceImageFilter.h.
typedef ImageToImageFilter< TInputImage, TOutputImage > itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::Superclass |
Definition at line 87 of file itkSliceBySliceImageFilter.h.
|
protected |
|
inlineoverrideprotected |
Definition at line 162 of file itkSliceBySliceImageFilter.h.
|
virtual |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::Object.
|
overrideprotectedvirtual |
A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.
Reimplemented from itk::ImageSource< TOutputImage >.
|
overrideprotectedvirtual |
What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierarchy. Up till now, the base assumption has been that the largest possible region will be requested of the input.
This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
|
virtual |
|
inline |
Definition at line 138 of file itkSliceBySliceImageFilter.h.
|
inline |
Definition at line 143 of file itkSliceBySliceImageFilter.h.
|
virtual |
|
virtual |
|
virtual |
|
virtual |
Runtime information support.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
|
virtual |
|
virtual |
The index of the slice currently processed by the filter. This is intended to be used with the IterationEvent sent before the processing of each object. It contains a relevant value only during the filter update.
|
static |
Standard New method.
|
overrideprotectedvirtual |
Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
|
virtual |
void itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::SetFilter | ( | InputFilterType * | filter | ) |
void itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::SetInputFilter | ( | InputFilterType * | filter | ) |
void itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::SetOutputFilter | ( | OutputFilterType * | filter | ) |
|
overrideprotectedvirtual |
Verifies that the input images occupy the same physical space and the each index is at the same physical location.
The default implementation of the PropagateRequestedRegion methods copies the index and size from the output to the input. This makes an implicit assumption that the images occupy the same physical location at each voxel. This method enforces that they are the same.
This implementation verifies that all input images of InputImageDimensions have the same origin, spacing and direction.
Filters which do not expect all input images to be at the same physical location should over-ride this method. Also filters whose inputs are different dimensions may need to overide this method.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
|
static |
Image related typedefs.
Definition at line 128 of file itkSliceBySliceImageFilter.h.
|
static |
Definition at line 131 of file itkSliceBySliceImageFilter.h.
|
private |
Definition at line 173 of file itkSliceBySliceImageFilter.h.
|
private |
Definition at line 177 of file itkSliceBySliceImageFilter.h.
|
private |
Definition at line 179 of file itkSliceBySliceImageFilter.h.
|
private |
Definition at line 181 of file itkSliceBySliceImageFilter.h.