template<class TImageType, class TAtlasImageType, class TAtlasLabelType>
class itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >
composite ITK filter for automatic skull-stripping
This ITK filter performs automatic skull stripping for 3D medical images
It requires 3 inputs: SetInput() SetAtlasImage() SetAtlasBrainMask() and it outputs the brain mask for the patient image
- Warning
- images have to be 3D
to be done: check if all required inputs are set and if images are 3D
version: 1.0 date: 20.04.2012 initial release
Stefan Bauer Institute for Surgical Technology and Biomechanics, University of Bern stefan.bauer at istb.unibe.ch
This code is from the Insight Journal paper: "A Skull-Stripping Filter for ITK" Bauer S., Fejes T., Reyes M. http://hdl.handle.net/10380/3353 Based on the paper: "Skull-stripping for Tumor-bearing Brain Images". Stefan Bauer, Lutz-Peter Nolte, and Mauricio Reyes. In Annual Meeting of the Swiss Society for Biomedical Engineering, page 2, Bern, April 2011..
Definition at line 94 of file itkStripTsImageFilter.h.
|
virtual void | GenerateData () |
|
| StripTsImageFilter () |
|
| ~StripTsImageFilter () |
|
virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
|
virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
|
virtual void | GenerateInputRequestedRegion () override |
|
| ImageToImageFilter () |
|
virtual void | VerifyInputInformation () override |
|
| ~ImageToImageFilter () override |
|
void | PushBackInput (const DataObject *input) override |
|
void | PushFrontInput (const DataObject *input) override |
|
virtual void | AfterThreadedGenerateData () |
|
virtual void | AllocateOutputs () |
|
virtual void | BeforeThreadedGenerateData () |
|
virtual const
ImageRegionSplitterBase * | GetImageRegionSplitter () const |
|
| ImageSource () |
|
virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion) |
|
virtual void | ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId) |
|
virtual | ~ImageSource () override |
|
virtual void | AddInput (DataObject *input) |
|
void | AddOptionalInputName (const DataObjectIdentifierType &) |
|
void | AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
|
virtual void | AddOutput (DataObject *output) |
|
bool | AddRequiredInputName (const DataObjectIdentifierType &) |
|
bool | AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
|
virtual void | CacheInputReleaseDataFlags () |
|
virtual void | GenerateOutputInformation () |
|
virtual void | GenerateOutputRequestedRegion (DataObject *output) |
|
DataObject * | GetInput (const DataObjectIdentifierType &key) |
|
const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
|
virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () const |
|
virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () const |
|
bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
|
bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
|
bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
|
| itkLegacyMacro (virtual void RemoveOutput(DataObject *output)) |
|
| itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num)) |
|
| itkLegacyMacro (virtual void RemoveInput(DataObject *input)) |
|
| itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num)) |
|
DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
|
DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
|
DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
|
DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
|
| ProcessObject () |
|
virtual void | PropagateResetPipeline () |
|
virtual void | ReleaseInputs () |
|
virtual void | RemoveInput (const DataObjectIdentifierType &key) |
|
virtual void | RemoveInput (DataObjectPointerArraySizeType) |
|
virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
|
virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
|
bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
|
virtual void | RestoreInputReleaseDataFlags () |
|
virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
|
virtual void | SetNthInput (DataObjectPointerArraySizeType num, DataObject *input) |
|
virtual void | SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output) |
|
void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
|
void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
|
virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
|
virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
|
virtual void | SetOutput (const DataObjectIdentifierType &key, DataObject *output) |
|
virtual void | SetPrimaryInput (DataObject *input) |
|
virtual void | SetPrimaryOutput (DataObject *output) |
|
void | SetRequiredInputNames (const NameArray &) |
|
virtual void | VerifyPreconditions () |
|
| ~ProcessObject () override |
|
DataObject * | GetInput (DataObjectPointerArraySizeType idx) |
|
const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
|
DataObject * | GetPrimaryInput () |
|
const DataObject * | GetPrimaryInput () const |
|
virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
|
virtual const char * | GetPrimaryInputName (void) const |
|
DataObject * | GetOutput (const DataObjectIdentifierType &key) |
|
const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
|
virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
|
virtual const char * | GetPrimaryOutputName (void) const |
|
DataObject * | GetOutput (DataObjectPointerArraySizeType idx) |
|
const DataObject * | GetOutput (DataObjectPointerArraySizeType idx) const |
|
DataObject * | GetPrimaryOutput () |
|
const DataObject * | GetPrimaryOutput () const |
|
| Object () |
|
bool | PrintObservers (std::ostream &os, Indent indent) const |
|
virtual void | SetTimeStamp (const TimeStamp &time) |
|
virtual | ~Object () override |
|
virtual LightObject::Pointer | InternalClone () const |
|
| LightObject () |
|
virtual void | PrintHeader (std::ostream &os, Indent indent) const |
|
virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
|
virtual | ~LightObject () |
|