itkMaskedFFTNormalizedCorrelationImageFilter.h

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/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkMaskedFFTNormalizedCorrelationImageFilter_h
#define itkMaskedFFTNormalizedCorrelationImageFilter_h

#include "itkImageToImageFilter.h"
#include "itkImage.h"

namespace itk
{

template <typename TInputImage, typename TOutputImage, typename TMaskImage=TInputImage >
class ITK_TEMPLATE_EXPORT MaskedFFTNormalizedCorrelationImageFilter :
    public ImageToImageFilter< TInputImage, TOutputImage >
{
public:
  typedef MaskedFFTNormalizedCorrelationImageFilter                     Self;
  typedef ImageToImageFilter < TInputImage, TOutputImage >              Superclass;
  typedef SmartPointer<Self>                                            Pointer;
  typedef SmartPointer<const Self>                                      ConstPointer;

  itkNewMacro(Self);

  itkTypeMacro(MaskedFFTNormalizedCorrelationImageFilter, ImageToImageFilter);

  itkStaticConstMacro(ImageDimension, unsigned int,
                      TOutputImage::ImageDimension);

  typedef TInputImage                               InputImageType;
  typedef typename InputImageType::RegionType       InputRegionType;
  typedef typename InputImageType::Pointer          InputImagePointer;
  typedef typename InputImageType::ConstPointer     InputImageConstPointer;
  typedef typename InputImageType::SizeType         InputSizeType;
  typedef typename itk::SizeValueType               SizeValueType;

  typedef TOutputImage                              OutputImageType;
  typedef typename OutputImageType::Pointer         OutputImagePointer;
  typedef typename OutputImageType::PixelType       OutputPixelType;

  typedef OutputPixelType                           RealPixelType;
  typedef Image< RealPixelType, ImageDimension>     RealImageType;
  typedef typename RealImageType::Pointer           RealImagePointer;
  typedef typename RealImageType::IndexType         RealIndexType;
  typedef typename RealImageType::SizeType          RealSizeType;
  typedef typename RealImageType::RegionType        RealRegionType;
  typedef typename RealImageType::PointType         RealPointType;

  typedef TMaskImage                                MaskImageType;
  typedef typename MaskImageType::Pointer           MaskImagePointer;

  typedef Image< std::complex<RealPixelType>, ImageDimension >  FFTImageType;
  typedef typename FFTImageType::Pointer                        FFTImagePointer;

  itkSetInputMacro(FixedImage, InputImageType);
  itkGetInputMacro(FixedImage, InputImageType);

  itkSetInputMacro(MovingImage, InputImageType);
  itkGetInputMacro(MovingImage, InputImageType);

  itkSetInputMacro(FixedImageMask, MaskImageType);
  itkGetInputMacro(FixedImageMask, MaskImageType);

  itkSetInputMacro(MovingImageMask, MaskImageType);
  itkGetInputMacro(MovingImageMask, MaskImageType);

  itkSetMacro(RequiredNumberOfOverlappingPixels,SizeValueType);
  itkGetMacro(RequiredNumberOfOverlappingPixels,SizeValueType);

  itkGetMacro(RequiredFractionOfOverlappingPixels,RealPixelType);
  itkSetClampMacro(RequiredFractionOfOverlappingPixels, RealPixelType, 0.0f, 1.0f);

  itkGetMacro(MaximumNumberOfOverlappingPixels,SizeValueType);

#ifdef ITK_USE_CONCEPT_CHECKING
  // Begin concept checking
  itkConceptMacro( OutputPixelTypeIsFloatingPointCheck,
                   ( Concept::IsFloatingPoint< OutputPixelType > ) );
  // End concept checking
#endif

protected:
  MaskedFFTNormalizedCorrelationImageFilter():m_TotalForwardAndInverseFFTs(12)
  {
    // #0 "FixedImage" required
    Self::SetPrimaryInputName("FixedImage");

    // #1 "MaskImage" required
    Self::AddRequiredInputName("MovingImage", 1);

    // #2 "FixedImageMask" optional
    Self::AddOptionalInputName("FixedImageMask", 2);

    // #3 "MaskImageMask" optional
    Self::AddOptionalInputName("MovingImageMask", 3);

    m_RequiredNumberOfOverlappingPixels = 0;
    m_RequiredFractionOfOverlappingPixels = 0;
    m_MaximumNumberOfOverlappingPixels = 0;
    m_AccumulatedProgress = 0.0;
  }
  virtual ~MaskedFFTNormalizedCorrelationImageFilter() ITK_OVERRIDE {}
  void PrintSelf(std::ostream& os, Indent indent) const ITK_OVERRIDE;

  void VerifyInputInformation() ITK_OVERRIDE;

  void GenerateData() ITK_OVERRIDE;

  virtual void GenerateInputRequestedRegion() ITK_OVERRIDE;

  void GenerateOutputInformation() ITK_OVERRIDE;

  void EnlargeOutputRequestedRegion( DataObject *output ) ITK_OVERRIDE;

  typename TMaskImage::Pointer PreProcessMask( const InputImageType * inputImage, const MaskImageType * inputMask );

  typename TInputImage::Pointer PreProcessImage( const InputImageType * inputImage, const MaskImageType * inputMask );

  template< typename LocalInputImageType >
  typename LocalInputImageType::Pointer RotateImage( LocalInputImageType * inputImage );

  template< typename LocalInputImageType, typename LocalOutputImageType >
  typename LocalOutputImageType::Pointer CalculateForwardFFT( LocalInputImageType * inputImage, InputSizeType & FFTImageSize );

  template< typename LocalInputImageType, typename LocalOutputImageType >
  typename LocalOutputImageType::Pointer CalculateInverseFFT( LocalInputImageType * inputImage, RealSizeType & combinedImageSize );

  // Helper math methods.
  template< typename LocalInputImageType, typename LocalOutputImageType >
  typename LocalOutputImageType::Pointer ElementProduct( LocalInputImageType * inputImage1, LocalInputImageType * inputImage2 );

  template< typename LocalInputImageType >
  typename LocalInputImageType::Pointer ElementQuotient( LocalInputImageType * inputImage1, LocalInputImageType * inputImage2 );

  template< typename LocalInputImageType >
  typename LocalInputImageType::Pointer ElementSubtraction( LocalInputImageType * inputImage1, LocalInputImageType * inputImage2 );

  template< typename LocalInputImageType >
  typename LocalInputImageType::Pointer ElementPositive( LocalInputImageType * inputImage );

  template< typename LocalInputImageType, typename LocalOutputImageType >
  typename LocalOutputImageType::Pointer ElementRound( LocalInputImageType * inputImage );

  // This function factorizes the image size uses factors of 2, 3, and
  // 5.  After this factorization, if there are any remaining values,
  // the function returns this value.
  int FactorizeNumber( int n );

  // Find the closest valid dimension above the desired dimension.  This
  // will be a combination of 2s, 3s, and 5s.
  int FindClosestValidDimension( int n );

  template< typename LocalInputImageType >
  double CalculatePrecisionTolerance( LocalInputImageType * inputImage );

private:
  ITK_DISALLOW_COPY_AND_ASSIGN(MaskedFFTNormalizedCorrelationImageFilter);

  SizeValueType m_RequiredNumberOfOverlappingPixels;

  RealPixelType m_RequiredFractionOfOverlappingPixels;

  SizeValueType m_MaximumNumberOfOverlappingPixels;

  const unsigned int m_TotalForwardAndInverseFFTs;

  float m_AccumulatedProgress;
};
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkMaskedFFTNormalizedCorrelationImageFilter.hxx"
#endif

#endif