itkSTAPLEImageFilter.h

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/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkSTAPLEImageFilter_h
#define itkSTAPLEImageFilter_h

#include "itkImageToImageFilter.h"
#include <vector>

namespace itk
{
template< typename TInputImage, typename TOutputImage >
class ITK_TEMPLATE_EXPORT STAPLEImageFilter:
  public ImageToImageFilter< TInputImage, TOutputImage >
{
public:
  typedef STAPLEImageFilter                               Self;
  typedef ImageToImageFilter< TInputImage, TOutputImage > Superclass;
  typedef SmartPointer< Self >                            Pointer;
  typedef SmartPointer< const Self >                      ConstPointer;

  itkNewMacro(Self);

  itkTypeMacro(STAPLEImageFilter, ImageToImageFilter);

  typedef typename TOutputImage::PixelType                   OutputPixelType;
  typedef typename TInputImage::PixelType                    InputPixelType;
  typedef typename NumericTraits< InputPixelType >::RealType RealType;

  itkStaticConstMacro(ImageDimension, unsigned int,
                      TOutputImage::ImageDimension);

  typedef TInputImage                       InputImageType;
  typedef typename InputImageType::Pointer  InputImagePointer;
  typedef TOutputImage                      OutputImageType;
  typedef typename OutputImageType::Pointer OutputImagePointer;

  typedef typename Superclass::OutputImageRegionType OutputImageRegionType;

  itkSetMacro(ForegroundValue, InputPixelType);
  itkGetConstMacro(ForegroundValue, InputPixelType);

  const std::vector< double > & GetSpecificity() const
  {
    return m_Specificity;
  }

  const std::vector< double > & GetSensitivity() const
  {
    return m_Sensitivity;
  }

  double GetSensitivity(unsigned int i)
  {
    if ( i > this->GetNumberOfIndexedInputs() )
      {
      itkExceptionMacro(<< "Array reference out of bounds.");
      }
    return m_Sensitivity[i];
  }

  double GetSpecificity(unsigned int i)
  {
    if ( i > this->GetNumberOfIndexedInputs() )
      {
      itkExceptionMacro(<< "Array reference out of bounds.");
      }
    return m_Specificity[i];
  }

  itkSetMacro(MaximumIterations, unsigned int);
  itkGetConstMacro(MaximumIterations, unsigned int);

  itkSetMacro(ConfidenceWeight, double);
  itkGetConstMacro(ConfidenceWeight, double);

  itkGetConstMacro(ElapsedIterations, unsigned int);

#ifdef ITK_USE_CONCEPT_CHECKING
  // Begin concept checking
  itkConceptMacro( InputHasNumericTraitsCheck,
                   ( Concept::HasNumericTraits< InputPixelType > ) );
  // End concept checking
#endif

protected:
  STAPLEImageFilter()
  {
    m_ForegroundValue = NumericTraits< InputPixelType >::OneValue();
    m_MaximumIterations = NumericTraits< unsigned int >::max();
    m_ElapsedIterations = 0;
    m_ConfidenceWeight = 1.0;
  }

  virtual ~STAPLEImageFilter() ITK_OVERRIDE {}
  void GenerateData() ITK_OVERRIDE;

  void PrintSelf(std::ostream &, Indent) const ITK_OVERRIDE;

private:
  ITK_DISALLOW_COPY_AND_ASSIGN(STAPLEImageFilter);

  InputPixelType m_ForegroundValue;
  unsigned int   m_ElapsedIterations;
  unsigned int   m_MaximumIterations;

  double m_ConfidenceWeight;

  std::vector< double > m_Sensitivity;
  std::vector< double > m_Specificity;
};
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkSTAPLEImageFilter.hxx"
#endif

#endif