itkVoronoiSegmentationImageFilterBase.h

Go to the documentation of this file.

/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkVoronoiSegmentationImageFilterBase_h
#define itkVoronoiSegmentationImageFilterBase_h

#include "itkImageToImageFilter.h"
#include "itkVoronoiDiagram2DGenerator.h"
#include "itkImage.h"

namespace itk
{
template< typename TInputImage, typename TOutputImage, typename TBinaryPriorImage = Image< unsigned char, 2 > >
class ITK_TEMPLATE_EXPORT VoronoiSegmentationImageFilterBase:
  public ImageToImageFilter< TInputImage, TOutputImage >
{
public:
  typedef VoronoiSegmentationImageFilterBase              Self;
  typedef ImageToImageFilter< TInputImage, TOutputImage > Superclass;
  typedef SmartPointer< Self >                            Pointer;
  typedef SmartPointer< const Self >                      ConstPointer;

  itkNewMacro(Self);

  itkTypeMacro(VoronoiSegmentationImageFilterBase, ImageToImageFilter);

  itkStaticConstMacro(ImageDimension, unsigned int,
                      TInputImage::ImageDimension);

  typedef TInputImage                        InputImageType;
  typedef typename TInputImage::Pointer      InputImagePointer;
  typedef typename TInputImage::ConstPointer InputImageConstPointer;
  typedef typename TInputImage::IndexType    IndexType;
  typedef typename TInputImage::SizeType     SizeType;
  typedef typename TInputImage::RegionType   RegionType;
  typedef typename TInputImage::PixelType    PixelType;

  typedef TOutputImage                     OutputImageType;
  typedef typename TOutputImage::PixelType OutputPixelType;

  typedef VoronoiDiagram2D< double >                   VoronoiDiagram;
  typedef VoronoiDiagram2DGenerator< double >          VoronoiDiagramGenerator;
  typedef typename VoronoiDiagram::PointType           PointType;
  typedef typename VoronoiDiagram::CellType            CellType;
  typedef typename VoronoiDiagram::CellAutoPointer     CellAutoPointer;
  typedef typename VoronoiDiagram::Pointer             VoronoiPointer;
  typedef typename CellType::PointIdIterator           PointIdIterator;
  typedef typename VoronoiDiagram::SeedsType           SeedsType;
  typedef typename VoronoiDiagram::SeedsIterator       SeedsIterator;
  typedef typename VoronoiDiagram::NeighborIdIterator  NeighborIdIterator;
  typedef typename VoronoiDiagram::VoronoiEdgeIterator EdgeIterator;
  typedef typename VoronoiDiagram::VoronoiEdge         EdgeInfo;
  typedef std::vector< PointType >                     PointTypeVector;
  typedef std::deque< PointType >                      PointTypeDeque;
  typedef TBinaryPriorImage                            BinaryObjectImage;
  typedef typename BinaryObjectImage::Pointer          BinaryObjectImagePointer;
  typedef std::vector< IndexType >                     IndexList;

  typedef Image< unsigned char, 2 > VDImage;
  typedef typename VDImage::Pointer VDImagePointer;

  itkSetMacro(NumberOfSeeds, int);
  itkGetConstMacro(NumberOfSeeds, int);

  itkSetMacro(MinRegion, SizeValueType);
  itkGetConstMacro(MinRegion, SizeValueType);

  itkSetMacro(Steps, int);
  itkGetConstMacro(Steps, int);

  itkGetConstMacro(LastStepSeeds, int);

  itkGetConstMacro(NumberOfSeedsToAdded, int);

  itkSetMacro(UseBackgroundInAPrior, bool);
  itkGetConstMacro(UseBackgroundInAPrior, bool);

  itkSetMacro(OutputBoundary, bool);
  itkGetConstMacro(OutputBoundary, bool);

  itkSetMacro(InteractiveSegmentation, bool);
  itkGetConstMacro(InteractiveSegmentation, bool);
  itkBooleanMacro(InteractiveSegmentation);

  itkSetMacro(MeanDeviation, double);
  itkGetConstMacro(MeanDeviation, double);

  itkSetMacro(Size, SizeType);
  itkGetConstMacro(Size, SizeType);

  virtual void TakeAPrior(const BinaryObjectImage *){}

  void RunSegment();

  void RunSegmentOneStep();

  virtual void MakeSegmentBoundary();

  virtual void MakeSegmentObject();

  VoronoiPointer GetVoronoiDiagram(void)
  { return m_WorkingVD; }

#if !defined( ITK_WRAPPING_PARSER )  // generates invalid iterator instantiation
                                     // with msvc
  void SetSeeds(int num, SeedsIterator begin)
  {
    m_NumberOfSeeds = num;
    m_WorkingVD->SetSeeds(num, begin);
  }

#endif

  void SetSeeds(SeedsType & seeds)
  {
    m_NumberOfSeeds = seeds.size();
    typename SeedsType::iterator it = seeds.begin();
    m_WorkingVD->SetSeeds(m_NumberOfSeeds, it);
  }

  PointType GetSeed(int SeedID)
  { return m_WorkingVD->GetSeed(SeedID); }

  void DrawDiagram(VDImagePointer result, unsigned char incolor,
                   unsigned char outcolor, unsigned char boundcolor);

  void BeforeNextStep();

  virtual void GenerateInputRequestedRegion() ITK_OVERRIDE;

  virtual void EnlargeOutputRequestedRegion(DataObject *output) ITK_OVERRIDE;

protected:
  VoronoiSegmentationImageFilterBase();
  ~VoronoiSegmentationImageFilterBase() ITK_OVERRIDE;
  virtual void PrintSelf(std::ostream & os, Indent indent) const ITK_OVERRIDE;

  void GenerateData() ITK_OVERRIDE; //general pipeline function.

  SizeType      m_Size;
  int           m_NumberOfSeeds;
  SizeValueType m_MinRegion;
  int           m_Steps;
  int           m_LastStepSeeds;
  int           m_NumberOfSeedsToAdded;
  int           m_NumberOfBoundary;

  std::vector< SizeValueType >           m_NumberOfPixels;
  std::vector< unsigned char >           m_Label;

  double m_MeanDeviation;
  bool   m_UseBackgroundInAPrior;
  bool   m_OutputBoundary; //if =1 then output the boundaries, if = 0 then
                           // output the object.
  bool m_InteractiveSegmentation;

  typename VoronoiDiagram::Pointer m_WorkingVD;

  typename VoronoiDiagramGenerator::Pointer m_VDGenerator;

  std::vector< PointType > m_SeedsToAdded;

  // private methods:
  // Classify all the voronoi cells as interior , exterior or boundary.
  virtual void ClassifyDiagram();

  // Generate the seeds to be added by dividing the boundary cells.
  virtual void GenerateAddingSeeds();

  // Compute the statistics of the pixels inside the cell.
  void GetPixelIndexFromPolygon(PointTypeDeque VertList, IndexList *PixelPool);

  virtual bool TestHomogeneity(IndexList &)
  { return 1; }

  void FillPolygon(PointTypeDeque vertlist, OutputPixelType color = 1);

  // Draw a straight line to the output image.
  void drawLine(PointType p1, PointType p2);

  // Draw the intermedia Voronoi Diagram structure.
  void drawVDline(VDImagePointer result, PointType p1, PointType p2, unsigned char color);

private:
  ITK_DISALLOW_COPY_AND_ASSIGN(VoronoiSegmentationImageFilterBase);
};
} //end namespace

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkVoronoiSegmentationImageFilterBase.hxx"
#endif

#endif