ITK  4.2.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Private Member Functions | Private Attributes
itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute > Class Template Reference

#include <itkAreaOpeningImageFilter.h>

+ Inheritance diagram for itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >:
+ Collaboration diagram for itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >:

List of all members.

Public Types

typedef TAttribute AttributeType
typedef SmartPointer< const SelfConstPointer
typedef TInputImage::IndexType IndexType
typedef
TInputImage::InternalPixelType 
InputInternalPixelType
typedef TInputImage::PixelType InputPixelType
typedef TInputImage::OffsetType OffsetType
typedef
TOutputImage::InternalPixelType 
OutputInternalPixelType
typedef TOutputImage::PixelType OutputPixelType
typedef SmartPointer< SelfPointer
typedef AreaOpeningImageFilter Self
typedef TInputImage::SizeType SizeType
typedef
AttributeMorphologyBaseImageFilter
< TInputImage, TOutputImage,
TAttribute, std::greater
< typename
TInputImage::PixelType > > 
Superclass
- Public Types inherited from itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, std::greater< TInputImage::PixelType > >
typedef
Superclass::InputImagePointer 
InputImagePointer
typedef TInputImage InputImageType
typedef std::list< IndexTypeListType
typedef TOutputImage OutputImageType
typedef TOutputImage::RegionType RegionType
- Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef
InputImageType::ConstPointer 
InputImageConstPointer
typedef InputImageType::PixelType InputImagePixelType
typedef InputImageType::RegionType InputImageRegionType
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
- Public Types inherited from itk::ImageSource< TOutputImage >
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
typedef DataObject::Pointer DataObjectPointer
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
typedef OutputImageType::Pointer OutputImagePointer
- Public Types inherited from itk::ProcessObject
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
typedef std::vector
< DataObjectIdentifierType
NameArray
- Public Types inherited from itk::Object
- Public Types inherited from itk::LightObject

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
virtual const char * GetNameOfClass () const
- Public Member Functions inherited from itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, std::greater< TInputImage::PixelType > >
virtual void SetFullyConnected (bool _arg)
virtual const bool & GetFullyConnected ()
virtual void FullyConnectedOn ()
virtual void FullyConnectedOff ()
virtual void SetLambda (AttributeType _arg)
virtual AttributeType GetLambda () const
- Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageTypeGetInput (void) const
const InputImageTypeGetInput (unsigned int idx) const
virtual void PopBackInput ()
virtual void PopFrontInput ()
virtual void PushBackInput (const InputImageType *image)
virtual void PushFrontInput (const InputImageType *image)
virtual void SetInput (const InputImageType *image)
virtual void SetInput (unsigned int, const TInputImage *image)
- Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageTypeGetOutput (unsigned int idx)
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
virtual void GraftOutput (DataObject *output)
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageTypeGetOutput (void)
const OutputImageTypeGetOutput (void) const
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
virtual void AbortGenerateDataOn ()
virtual const bool & GetAbortGenerateData ()
NameArray GetInputNames () const
MultiThreader * GetMultiThreader () const
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType GetNumberOfInputs () const
DataObjectPointerArraySizeType GetNumberOfOutputs () const
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
NameArray GetOutputNames () const
virtual const float & GetProgress ()
NameArray GetRequiredInputNames () const
bool HasInput (const DataObjectIdentifierType &key) const
bool HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
virtual void PrepareOutputs ()
virtual void PropagateRequestedRegion (DataObject *output)
virtual void ResetPipeline ()
virtual void SetAbortGenerateData (bool _arg)
virtual void SetProgress (float _arg)
virtual void Update ()
virtual void UpdateLargestPossibleRegion ()
virtual void UpdateOutputData (DataObject *output)
virtual void UpdateOutputInformation ()
void UpdateProgress (float amount)
DataObjectPointerArray GetInputs ()
DataObjectPointerArray GetOutputs ()
DataObjectPointerArray GetIndexedInputs ()
DataObjectPointerArray GetIndexedOutputs ()
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
virtual void SetReleaseDataFlag (bool flag)
virtual bool GetReleaseDataFlag () const
void ReleaseDataFlagOn ()
void ReleaseDataFlagOff ()
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool & GetReleaseDataBeforeUpdateFlag ()
virtual void ReleaseDataBeforeUpdateFlagOn ()
virtual void ReleaseDataBeforeUpdateFlagOff ()
virtual void SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdTypeGetNumberOfThreads ()
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
unsigned long AddObserver (const EventObject &event, Command *) const
virtual void DebugOff () const
virtual void DebugOn () const
CommandGetCommand (unsigned long tag)
bool GetDebug () const
MetaDataDictionaryGetMetaDataDictionary (void)
const MetaDataDictionaryGetMetaDataDictionary (void) const
virtual unsigned long GetMTime () const
virtual const TimeStampGetTimeStamp () const
bool HasObserver (const EventObject &event) const
void InvokeEvent (const EventObject &)
void InvokeEvent (const EventObject &) const
virtual void Modified () const
virtual void Register () const
void RemoveAllObservers ()
void RemoveObserver (unsigned long tag)
void SetDebug (bool debugFlag) const
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void SetReferenceCount (int)
virtual void UnRegister () const
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
virtual int GetReferenceCount () const
 itkCloneMacro (Self)
void Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions

static Pointer New ()

Static Public Attributes

static const unsigned int ImageDimension = TOutputImage::ImageDimension
- Static Public Attributes inherited from itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, std::greater< TInputImage::PixelType > >
- Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int InputImageDimension = TInputImage::ImageDimension
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
- Static Public Attributes inherited from itk::ImageSource< TOutputImage >

Protected Member Functions

void GenerateData ()
void PrintSelf (std::ostream &os, Indent indent) const
virtual ~AreaOpeningImageFilter ()
- Protected Member Functions inherited from itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, std::greater< TInputImage::PixelType > >
 AttributeMorphologyBaseImageFilter (const Self &)
void EnlargeOutputRequestedRegion (DataObject *)
void GenerateInputRequestedRegion ()
virtual ~AttributeMorphologyBaseImageFilter ()
 AttributeMorphologyBaseImageFilter ()
- Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 ImageToImageFilter ()
virtual void VerifyInputInformation ()
 ~ImageToImageFilter ()
void PushBackInput (const DataObject *input)
void PushFrontInput (const DataObject *input)
- Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void AfterThreadedGenerateData ()
virtual void AllocateOutputs ()
virtual void BeforeThreadedGenerateData ()
 ImageSource ()
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual ~ImageSource ()
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
virtual void AddOutput (DataObject *output)
bool AddRequiredInputName (const DataObjectIdentifierType &)
virtual void CacheInputReleaseDataFlags ()
virtual void GenerateOutputInformation ()
virtual void GenerateOutputRequestedRegion (DataObject *output)
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs ()
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs ()
bool IsIndexedName (const DataObjectIdentifierType &) const
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType MakeIndexFromName (const DataObjectIdentifierType &) const
DataObjectIdentifierType MakeNameFromIndex (DataObjectPointerArraySizeType) const
 ProcessObject ()
virtual void PropagateResetPipeline ()
virtual void ReleaseInputs ()
virtual void RemoveInput (const DataObjectIdentifierType &key)
virtual void RemoveInput (DataObjectPointerArraySizeType)
virtual void RemoveOutput (const DataObjectIdentifierType &key)
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void RestoreInputReleaseDataFlags ()
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void SetPrimaryInput (DataObject *input)
virtual void SetPrimaryOutput (DataObject *output)
void SetRequiredInputNames (const NameArray &)
virtual void VerifyPreconditions ()
 ~ProcessObject ()
DataObjectGetInput (const DataObjectIdentifierType &key)
const DataObjectGetInput (const DataObjectIdentifierType &key) const
DataObjectGetInput (DataObjectPointerArraySizeType)
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
DataObjectGetPrimaryInput ()
const DataObjectGetPrimaryInput () const
DataObjectGetOutput (const DataObjectIdentifierType &key)
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
DataObjectGetPrimaryOutput ()
const DataObjectGetPrimaryOutput () const
- Protected Member Functions inherited from itk::Object
 Object ()
bool PrintObservers (std::ostream &os, Indent indent) const
virtual void SetTimeStamp (const TimeStamp &time)
virtual ~Object ()
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 LightObject ()
virtual void PrintHeader (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const
virtual ~LightObject ()

Private Member Functions

 AreaOpeningImageFilter (const Self &)
void operator= (const Self &)

Private Attributes

bool m_UseImageSpacing
virtual void SetUseImageSpacing (bool _arg)
virtual const bool & GetUseImageSpacing ()
virtual void UseImageSpacingOn ()
virtual void UseImageSpacingOff ()
 AreaOpeningImageFilter ()

Additional Inherited Members

- Protected Attributes inherited from itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, std::greater< TInputImage::PixelType > >
AttributeType m_AttributeValuePerPixel

Detailed Description

template<class TInputImage, class TOutputImage, class TAttribute = typename TInputImage::SpacingType::ValueType>
class itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >

Morphological opening by attributes.

This is the base class for morphology attribute operations. Attribute openings remove blobs according to criteria such as area. When applied to grayscale images it has the effect of trimming peaks based on area while leaving the rest of the image unchanged. It is possible to use attributes besides area, but no others are implemented yet. This filter uses some dodgy coding practices - most notably copying the image data to a linear buffer to allow direct implementation of the published algorithm. It should therefore be quite a good candidate to carry out tests of itk iterator performance with randomish access patterns.

This filter is implemented using the method of Wilkinson, "A comparison of algorithms for Connected set openings and Closings", A. Meijster and M. H. Wilkinson, PAMI, vol 24, no. 4, April 2002. Attempts at implementing the method from ISMM 2000 are also included, but operation appears incorrect. Check the ifdefs if you are interested.

This code was contributed in the Insight Journal paper

"Grayscale morphological attribute operations" by Beare R. http://hdl.handle.net/1926/1316 http://www.insight-journal.org/browse/publication/203

Author:
Richard Beare. Department of Medicine, Monash University, Melbourne, Australia.

Definition at line 60 of file itkAreaOpeningImageFilter.h.


Member Typedef Documentation

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
typedef TAttribute itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::AttributeType
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
typedef SmartPointer< const Self > itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::ConstPointer
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
typedef TInputImage::IndexType itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::IndexType
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
typedef TInputImage::InternalPixelType itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::InputInternalPixelType
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
typedef TInputImage::PixelType itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::InputPixelType
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
typedef TInputImage::OffsetType itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::OffsetType
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
typedef TOutputImage::InternalPixelType itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::OutputInternalPixelType
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
typedef TOutputImage::PixelType itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::OutputPixelType

Extract some information from the image types. Dimensionality of the two images is assumed to be the same.

Reimplemented from itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, std::greater< TInputImage::PixelType > >.

Definition at line 78 of file itkAreaOpeningImageFilter.h.

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
typedef SmartPointer< Self > itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::Pointer
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
typedef AreaOpeningImageFilter itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::Self
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
typedef TInputImage::SizeType itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::SizeType
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
typedef AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, std::greater< typename TInputImage::PixelType > > itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::Superclass

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::AreaOpeningImageFilter ( )
inlineprotected

Set/Get whether the image spacing is used or not - defaults to true.

Definition at line 104 of file itkAreaOpeningImageFilter.h.

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
virtual itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::~AreaOpeningImageFilter ( )
inlineprotectedvirtual

Definition at line 110 of file itkAreaOpeningImageFilter.h.

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::AreaOpeningImageFilter ( const Self )
private

Member Function Documentation

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
virtual::itk::LightObject::Pointer itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, std::greater< TInputImage::PixelType > >.

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
void itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::GenerateData ( void  )
inlineprotectedvirtual
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
virtual const char* itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::GetNameOfClass ( ) const
virtual
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
virtual const bool& itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::GetUseImageSpacing ( )
virtual

Set/Get whether the image spacing is used or not - defaults to true.

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
static Pointer itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::New ( )
static
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
void itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::operator= ( const Self )
private

PushBackInput(), PushFronInput() in the public section force the input to be the type expected by an ImageToImageFilter. However, these methods end of "hiding" the versions from the superclass (ProcessObject) whose arguments are DataObjects. Here, we re-expose the versions from ProcessObject to avoid warnings about hiding methods from the superclass.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
void itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
inlineprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::AttributeMorphologyBaseImageFilter< TInputImage, TOutputImage, TAttribute, std::greater< TInputImage::PixelType > >.

Definition at line 131 of file itkAreaOpeningImageFilter.h.

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
virtual void itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::SetUseImageSpacing ( bool  _arg)
virtual

Set/Get whether the image spacing is used or not - defaults to true.

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
virtual void itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::UseImageSpacingOff ( )
virtual

Set/Get whether the image spacing is used or not - defaults to true.

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
virtual void itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::UseImageSpacingOn ( )
virtual

Set/Get whether the image spacing is used or not - defaults to true.


Member Data Documentation

template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
const unsigned int itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::ImageDimension = TOutputImage::ImageDimension
static
template<class TInputImage , class TOutputImage , class TAttribute = typename TInputImage::SpacingType::ValueType>
bool itk::AreaOpeningImageFilter< TInputImage, TOutputImage, TAttribute >::m_UseImageSpacing
private

Definition at line 142 of file itkAreaOpeningImageFilter.h.


The documentation for this class was generated from the following file: