ITK  4.2.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Private Member Functions | Private Attributes
itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel > Class Template Reference

#include <itkBinaryClosingByReconstructionImageFilter.h>

+ Inheritance diagram for itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >:
+ Collaboration diagram for itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >:

List of all members.

Public Types

typedef SmartPointer< const SelfConstPointer
typedef InputImageType::Pointer InputImagePointer
typedef TInputImage InputImageType
typedef TInputImage::PixelType InputPixelType
typedef TKernel KernelType
typedef OutputImageType::RegionType OutputImageRegionType
typedef TInputImage OutputImageType
typedef TInputImage::PixelType OutputPixelType
typedef SmartPointer< SelfPointer
typedef
BinaryClosingByReconstructionImageFilter 
Self
typedef KernelImageFilter
< TInputImage, TInputImage,
TKernel > 
Superclass
- Public Types inherited from itk::KernelImageFilter< TInputImage, TInputImage, TKernel >
typedef FlatStructuringElement
< itkGetStaticConstMacro(ImageDimension) > 
FlatKernelType
typedef TInputImage::IndexType IndexType
typedef TInputImage::OffsetType OffsetType
typedef TInputImage::SizeType RadiusType
typedef TInputImage::RegionType RegionType
typedef TInputImage::SizeType SizeType
- Public Types inherited from itk::BoxImageFilter< TInputImage, TInputImage >
typedef TInputImage::SizeValueType RadiusValueType
- Public Types inherited from itk::ImageToImageFilter< TInputImage, TInputImage >
typedef
InputImageType::ConstPointer 
InputImageConstPointer
typedef InputImageType::PixelType InputImagePixelType
typedef InputImageType::RegionType InputImageRegionType
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
- Public Types inherited from itk::ImageSource< TInputImage >
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
typedef DataObject::Pointer DataObjectPointer
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
typedef OutputImageType::Pointer OutputImagePointer
- Public Types inherited from itk::ProcessObject
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
typedef std::vector
< DataObjectIdentifierType
NameArray
- Public Types inherited from itk::Object
- Public Types inherited from itk::LightObject

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
virtual InputPixelType GetForegroundValue ()
virtual const char * GetNameOfClass () const
virtual void SetForegroundValue (InputPixelType _arg)
virtual void SetFullyConnected (bool _arg)
virtual const bool & GetFullyConnected ()
virtual void FullyConnectedOn ()
virtual void FullyConnectedOff ()
- Public Member Functions inherited from itk::KernelImageFilter< TInputImage, TInputImage, TKernel >
virtual const KernelTypeGetKernel ()
virtual void SetKernel (const KernelType &kernel)
virtual void SetRadius (const RadiusType &radius)
virtual void SetRadius (const SizeValueType &radius)
- Public Member Functions inherited from itk::BoxImageFilter< TInputImage, TInputImage >
virtual const RadiusTypeGetRadius ()
virtual void SetRadius (const RadiusValueType &radius)
- Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TInputImage >
const InputImageTypeGetInput (void) const
const InputImageTypeGetInput (unsigned int idx) const
virtual void PopBackInput ()
virtual void PopFrontInput ()
virtual void PushBackInput (const InputImageType *image)
virtual void PushFrontInput (const InputImageType *image)
virtual void SetInput (const InputImageType *image)
virtual void SetInput (unsigned int, const TInputImage *image)
- Public Member Functions inherited from itk::ImageSource< TInputImage >
OutputImageTypeGetOutput (unsigned int idx)
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
virtual void GraftOutput (DataObject *output)
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageTypeGetOutput (void)
const OutputImageTypeGetOutput (void) const
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
virtual void AbortGenerateDataOn ()
virtual void EnlargeOutputRequestedRegion (DataObject *)
virtual const bool & GetAbortGenerateData ()
NameArray GetInputNames () const
MultiThreader * GetMultiThreader () const
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType GetNumberOfInputs () const
DataObjectPointerArraySizeType GetNumberOfOutputs () const
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
NameArray GetOutputNames () const
virtual const float & GetProgress ()
NameArray GetRequiredInputNames () const
bool HasInput (const DataObjectIdentifierType &key) const
bool HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
virtual void PrepareOutputs ()
virtual void PropagateRequestedRegion (DataObject *output)
virtual void ResetPipeline ()
virtual void SetAbortGenerateData (bool _arg)
virtual void SetProgress (float _arg)
virtual void Update ()
virtual void UpdateLargestPossibleRegion ()
virtual void UpdateOutputData (DataObject *output)
virtual void UpdateOutputInformation ()
void UpdateProgress (float amount)
DataObjectPointerArray GetInputs ()
DataObjectPointerArray GetOutputs ()
DataObjectPointerArray GetIndexedInputs ()
DataObjectPointerArray GetIndexedOutputs ()
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
virtual void SetReleaseDataFlag (bool flag)
virtual bool GetReleaseDataFlag () const
void ReleaseDataFlagOn ()
void ReleaseDataFlagOff ()
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool & GetReleaseDataBeforeUpdateFlag ()
virtual void ReleaseDataBeforeUpdateFlagOn ()
virtual void ReleaseDataBeforeUpdateFlagOff ()
virtual void SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdTypeGetNumberOfThreads ()
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
unsigned long AddObserver (const EventObject &event, Command *) const
virtual void DebugOff () const
virtual void DebugOn () const
CommandGetCommand (unsigned long tag)
bool GetDebug () const
MetaDataDictionaryGetMetaDataDictionary (void)
const MetaDataDictionaryGetMetaDataDictionary (void) const
virtual unsigned long GetMTime () const
virtual const TimeStampGetTimeStamp () const
bool HasObserver (const EventObject &event) const
void InvokeEvent (const EventObject &)
void InvokeEvent (const EventObject &) const
virtual void Modified () const
virtual void Register () const
void RemoveAllObservers ()
void RemoveObserver (unsigned long tag)
void SetDebug (bool debugFlag) const
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void SetReferenceCount (int)
virtual void UnRegister () const
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
virtual int GetReferenceCount () const
 itkCloneMacro (Self)
void Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions

static Pointer New ()

Protected Member Functions

 BinaryClosingByReconstructionImageFilter ()
void GenerateData ()
void GenerateInputRequestedRegion ()
void PrintSelf (std::ostream &os, Indent indent) const
 ~BinaryClosingByReconstructionImageFilter ()
- Protected Member Functions inherited from itk::KernelImageFilter< TInputImage, TInputImage, TKernel >
 KernelImageFilter ()
 ~KernelImageFilter ()
- Protected Member Functions inherited from itk::BoxImageFilter< TInputImage, TInputImage >
 BoxImageFilter ()
 ~BoxImageFilter ()
- Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TInputImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 ImageToImageFilter ()
virtual void VerifyInputInformation ()
 ~ImageToImageFilter ()
void PushBackInput (const DataObject *input)
void PushFrontInput (const DataObject *input)
- Protected Member Functions inherited from itk::ImageSource< TInputImage >
virtual void AfterThreadedGenerateData ()
virtual void AllocateOutputs ()
virtual void BeforeThreadedGenerateData ()
 ImageSource ()
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual ~ImageSource ()
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
virtual void AddOutput (DataObject *output)
bool AddRequiredInputName (const DataObjectIdentifierType &)
virtual void CacheInputReleaseDataFlags ()
virtual void GenerateOutputInformation ()
virtual void GenerateOutputRequestedRegion (DataObject *output)
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs ()
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs ()
bool IsIndexedName (const DataObjectIdentifierType &) const
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType MakeIndexFromName (const DataObjectIdentifierType &) const
DataObjectIdentifierType MakeNameFromIndex (DataObjectPointerArraySizeType) const
 ProcessObject ()
virtual void PropagateResetPipeline ()
virtual void ReleaseInputs ()
virtual void RemoveInput (const DataObjectIdentifierType &key)
virtual void RemoveInput (DataObjectPointerArraySizeType)
virtual void RemoveOutput (const DataObjectIdentifierType &key)
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void RestoreInputReleaseDataFlags ()
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void SetPrimaryInput (DataObject *input)
virtual void SetPrimaryOutput (DataObject *output)
void SetRequiredInputNames (const NameArray &)
virtual void VerifyPreconditions ()
 ~ProcessObject ()
DataObjectGetInput (const DataObjectIdentifierType &key)
const DataObjectGetInput (const DataObjectIdentifierType &key) const
DataObjectGetInput (DataObjectPointerArraySizeType)
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
DataObjectGetPrimaryInput ()
const DataObjectGetPrimaryInput () const
DataObjectGetOutput (const DataObjectIdentifierType &key)
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
DataObjectGetPrimaryOutput ()
const DataObjectGetPrimaryOutput () const
- Protected Member Functions inherited from itk::Object
 Object ()
bool PrintObservers (std::ostream &os, Indent indent) const
virtual void SetTimeStamp (const TimeStamp &time)
virtual ~Object ()
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 LightObject ()
virtual void PrintHeader (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const
virtual ~LightObject ()

Private Member Functions

 BinaryClosingByReconstructionImageFilter (const Self &)
void operator= (const Self &)

Private Attributes

InputPixelType m_ForegroundValue
bool m_FullyConnected

Additional Inherited Members

- Static Public Attributes inherited from itk::KernelImageFilter< TInputImage, TInputImage, TKernel >
static const unsigned int ImageDimension
- Static Public Attributes inherited from itk::BoxImageFilter< TInputImage, TInputImage >
- Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TInputImage >
static const unsigned int InputImageDimension
static const unsigned int OutputImageDimension
- Static Public Attributes inherited from itk::ImageSource< TInputImage >
KernelType m_Kernel

Detailed Description

template<class TInputImage, class TKernel>
class itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >

binary closing by reconstruction of an image.

This filter removes small (i.e., smaller than the structuring element) holes in the image. It is defined as: Closing(f) = ReconstructionByErosion(Dilation(f)).

The structuring element is assumed to be composed of binary values (zero or one). Only elements of the structuring element having values > 0 are candidates for affecting the center pixel.

Author:
Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: http://hdl.handle.net/1926/584 or http://www.insight-journal.org/browse/publication/176

See also:
MorphologyImageFilter, ClosingByReconstructionImageFilter, BinaryOpeningByReconstructionImageFilter

Definition at line 49 of file itkBinaryClosingByReconstructionImageFilter.h.


Member Typedef Documentation

template<class TInputImage , class TKernel >
typedef SmartPointer<const Self> itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::ConstPointer
template<class TInputImage , class TKernel >
typedef InputImageType::Pointer itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::InputImagePointer
template<class TInputImage , class TKernel >
typedef TInputImage itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::InputImageType
template<class TInputImage , class TKernel >
typedef TInputImage::PixelType itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::InputPixelType

Declaration of pixel type.

Reimplemented from itk::KernelImageFilter< TInputImage, TInputImage, TKernel >.

Definition at line 73 of file itkBinaryClosingByReconstructionImageFilter.h.

template<class TInputImage , class TKernel >
typedef TKernel itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::KernelType
template<class TInputImage , class TKernel >
typedef OutputImageType::RegionType itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::OutputImageRegionType

Superclass typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 70 of file itkBinaryClosingByReconstructionImageFilter.h.

template<class TInputImage , class TKernel >
typedef TInputImage itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::OutputImageType

Some convenient typedefs.

Reimplemented from itk::KernelImageFilter< TInputImage, TInputImage, TKernel >.

Definition at line 68 of file itkBinaryClosingByReconstructionImageFilter.h.

template<class TInputImage , class TKernel >
typedef TInputImage::PixelType itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::OutputPixelType
template<class TInputImage , class TKernel >
typedef SmartPointer<Self> itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::Pointer
template<class TInputImage , class TKernel >
typedef BinaryClosingByReconstructionImageFilter itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::Self

Standard class typedefs.

Reimplemented from itk::KernelImageFilter< TInputImage, TInputImage, TKernel >.

Definition at line 54 of file itkBinaryClosingByReconstructionImageFilter.h.

template<class TInputImage , class TKernel >
typedef KernelImageFilter<TInputImage, TInputImage, TKernel> itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::Superclass

Constructor & Destructor Documentation

template<class TInputImage , class TKernel >
itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::BinaryClosingByReconstructionImageFilter ( )
protected
template<class TInputImage , class TKernel >
itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::~BinaryClosingByReconstructionImageFilter ( )
inlineprotected
template<class TInputImage , class TKernel >
itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::BinaryClosingByReconstructionImageFilter ( const Self )
private

Member Function Documentation

template<class TInputImage , class TKernel >
virtual::itk::LightObject::Pointer itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::KernelImageFilter< TInputImage, TInputImage, TKernel >.

template<class TInputImage , class TKernel >
virtual void itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::FullyConnectedOff ( )
virtual

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

template<class TInputImage , class TKernel >
virtual void itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::FullyConnectedOn ( )
virtual

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

template<class TInputImage , class TKernel >
void itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::GenerateData ( )
protectedvirtual

Single-threaded version of GenerateData. This filter delegates to GrayscaleDilateImageFilter GrayscaleErodeImageFilter.

Reimplemented from itk::ImageSource< TInputImage >.

template<class TInputImage , class TKernel >
void itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::GenerateInputRequestedRegion ( )
protectedvirtual

BinaryClosingByReconstructionImageFilter need to make sure they request enough of an input image to account for the structuring element size. The input requested region is expanded by the radius of the structuring element. If the request extends past the LargestPossibleRegion for the input, the request is cropped by the LargestPossibleRegion.

Reimplemented from itk::BoxImageFilter< TInputImage, TInputImage >.

template<class TInputImage , class TKernel >
virtual InputPixelType itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::GetForegroundValue ( )
virtual

Get the value in the image considered as "foreground". Defaults to maximum value of InputPixelType.

template<class TInputImage , class TKernel >
virtual const bool& itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::GetFullyConnected ( )
virtual

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

template<class TInputImage , class TKernel >
virtual const char* itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::GetNameOfClass ( ) const
virtual

Runtime information support.

Reimplemented from itk::KernelImageFilter< TInputImage, TInputImage, TKernel >.

template<class TInputImage , class TKernel >
static Pointer itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::New ( )
static

Standard New method.

Reimplemented from itk::KernelImageFilter< TInputImage, TInputImage, TKernel >.

template<class TInputImage , class TKernel >
void itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::operator= ( const Self )
private

kernel or structuring element to use.

Reimplemented from itk::KernelImageFilter< TInputImage, TInputImage, TKernel >.

template<class TInputImage , class TKernel >
void itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::KernelImageFilter< TInputImage, TInputImage, TKernel >.

template<class TInputImage , class TKernel >
virtual void itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::SetForegroundValue ( InputPixelType  _arg)
virtual

Set the value in the image to consider as "foreground". Defaults to maximum value of InputPixelType.

template<class TInputImage , class TKernel >
virtual void itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::SetFullyConnected ( bool  _arg)
virtual

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.


Member Data Documentation

template<class TInputImage , class TKernel >
InputPixelType itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::m_ForegroundValue
private
template<class TInputImage , class TKernel >
bool itk::BinaryClosingByReconstructionImageFilter< TInputImage, TKernel >::m_FullyConnected
private

The documentation for this class was generated from the following file: