Public Member Functions |
virtual bool | CanReadFile (const char *) |
virtual bool | CanWriteFile (const char *) |
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
char * | GetDimensionOrder () |
virtual const char * | GetNameOfClass () const |
virtual void | Read (void *buffer) |
virtual void | ReadImageInformation () |
void | SetDimensionOrder (char *dimorder) |
virtual void | Write (const void *buffer) |
virtual void | WriteImageInformation () |
void | XYZFromDirectionCosines (midimhandle_t *hdims, int *dim_indices, unsigned int *number_of_components) |
virtual bool | CanStreamRead () |
virtual bool | CanStreamWrite () |
virtual ImageIORegion | GenerateStreamableReadRegionFromRequestedRegion (const ImageIORegion &requested) const |
virtual unsigned int | GetActualNumberOfSplitsForWriting (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion) |
std::string | GetByteOrderAsString (ByteOrder) const |
virtual unsigned int | GetComponentSize () const |
virtual IOComponentType | GetComponentType () const |
virtual const std::type_info & | GetComponentTypeInfo () const |
virtual std::vector< double > | GetDefaultDirection (unsigned int i) const |
virtual unsigned int | GetDimensions (unsigned int i) const |
virtual std::vector< double > | GetDirection (unsigned int i) const |
std::string | GetFileTypeAsString (FileType) const |
SizeType | GetImageSizeInBytes () const |
SizeType | GetImageSizeInComponents () const |
SizeType | GetImageSizeInPixels () const |
virtual unsigned int | GetNumberOfDimensions () const |
virtual double | GetOrigin (unsigned int i) const |
virtual SizeType | GetPixelStride () const |
virtual double | GetSpacing (unsigned int i) const |
virtual ImageIORegion | GetSplitRegionForWriting (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion) |
const ArrayOfExtensionsType & | GetSupportedReadExtensions () const |
const ArrayOfExtensionsType & | GetSupportedWriteExtensions () const |
void | SetByteOrderToLittleEndian () |
virtual void | SetComponentType (const IOComponentType _arg) |
virtual void | SetDirection (unsigned int i, std::vector< double > &direction) |
virtual void | SetDirection (unsigned int i, vnl_vector< double > &direction) |
void | SetFileTypeToBinary () |
void | SetNumberOfDimensions (unsigned int) |
virtual void | SetOrigin (unsigned int i, double origin) |
template<class TPixel , unsigned VLength> |
void | SetPixelTypeInfo (const SymmetricSecondRankTensor< TPixel, VLength > *) |
template<typename TPixel > |
void | SetPixelTypeInfo (const DiffusionTensor3D< TPixel > *) |
template<typename TPixel , unsigned VLength> |
void | SetPixelTypeInfo (const Matrix< TPixel, VLength, VLength > *) |
template<typename TPixel > |
void | SetPixelTypeInfo (const std::complex< TPixel > *) |
template<unsigned VLength> |
void | SetPixelTypeInfo (const Offset< VLength > *) |
virtual void | SetSpacing (unsigned int i, double spacing) |
template<typename TPixel > |
void | SetTypeInfo (const TPixel *) |
virtual bool | SupportsDimension (unsigned long dim) |
virtual void | SetFileName (const char *_arg) |
virtual const char * | GetFileName () const |
virtual void | SetDimensions (unsigned int i, unsigned int dim) |
virtual void | SetIORegion (ImageIORegion _arg) |
virtual const ImageIORegion & | GetIORegion () |
virtual void | SetPixelType (const IOPixelType _arg) |
virtual IOPixelType | GetPixelType () const |
virtual void | SetNumberOfComponents (unsigned int _arg) |
virtual const unsigned int & | GetNumberOfComponents () |
virtual void | SetUseCompression (bool _arg) |
virtual bool | GetUseCompression () const |
virtual void | UseCompressionOn () |
virtual void | UseCompressionOff () |
virtual void | SetUseStreamedReading (bool _arg) |
virtual bool | GetUseStreamedReading () const |
virtual void | UseStreamedReadingOn () |
virtual void | UseStreamedReadingOff () |
virtual void | SetUseStreamedWriting (bool _arg) |
virtual bool | GetUseStreamedWriting () const |
virtual void | UseStreamedWritingOn () |
virtual void | UseStreamedWritingOff () |
virtual void | SetFileType (const FileType _arg) |
virtual FileType | GetFileType () const |
void | SetFileTypeToASCII () |
virtual void | SetByteOrder (const ByteOrder _arg) |
virtual ByteOrder | GetByteOrder () const |
void | SetByteOrderToBigEndian () |
template<typename TPixel > |
void | SetPixelTypeInfo (const TPixel *) |
template<typename TPixel > |
void | SetPixelTypeInfo (const RGBPixel< TPixel > *) |
template<typename TPixel > |
void | SetPixelTypeInfo (const RGBAPixel< TPixel > *) |
template<typename TPixel , unsigned VLength> |
void | SetPixelTypeInfo (const Vector< TPixel, VLength > *) |
template<typename TPixel > |
void | SetPixelTypeInfo (const VariableLengthVector< TPixel > *) |
template<typename TPixel , unsigned VLength> |
void | SetPixelTypeInfo (const CovariantVector< TPixel, VLength > *) |
template<typename TPixel , unsigned VLength> |
void | SetPixelTypeInfo (const FixedArray< TPixel, VLength > *) |
virtual void | AbortGenerateDataOff () |
virtual void | AbortGenerateDataOn () |
virtual const bool & | GetAbortGenerateData () |
virtual void | SetAbortGenerateData (bool _arg) |
virtual void | UpdateOutputData () |
void | UpdateProgress (float amount) |
virtual void | SetProgress (float _arg) |
virtual const float & | GetProgress () |
unsigned long | AddObserver (const EventObject &event, Command *) |
unsigned long | AddObserver (const EventObject &event, Command *) const |
virtual void | DebugOff () const |
virtual void | DebugOn () const |
Command * | GetCommand (unsigned long tag) |
bool | GetDebug () const |
MetaDataDictionary & | GetMetaDataDictionary (void) |
const MetaDataDictionary & | GetMetaDataDictionary (void) const |
virtual unsigned long | GetMTime () const |
virtual const TimeStamp & | GetTimeStamp () const |
bool | HasObserver (const EventObject &event) const |
void | InvokeEvent (const EventObject &) |
void | InvokeEvent (const EventObject &) const |
virtual void | Modified () const |
virtual void | Register () const |
void | RemoveAllObservers () |
void | RemoveObserver (unsigned long tag) |
void | SetDebug (bool debugFlag) const |
void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
virtual void | SetReferenceCount (int) |
virtual void | UnRegister () const |
virtual void | Delete () |
virtual int | GetReferenceCount () const |
| itkCloneMacro (Self) |
void | Print (std::ostream &os, Indent indent=0) const |
Protected Member Functions |
int | CheckDimensionOrder (char *userdimorder) |
virtual char * | GetDimensionName (unsigned int i) |
| MINC2ImageIO () |
void | PrintSelf (std::ostream &os, Indent indent) const |
virtual void | SetDimensionName (unsigned int i, char *name) |
void | WriteSlice (std::string &fileName, const void *buffer) |
| ~MINC2ImageIO () |
void | AddSupportedReadExtension (const char *extension) |
void | AddSupportedWriteExtension (const char *extension) |
void | ComputeStrides () |
virtual unsigned int | GetActualNumberOfSplitsForWritingCanStreamWrite (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion) const |
SizeType | GetComponentStride () const |
virtual unsigned int | GetPixelSize () const |
SizeType | GetRowStride () const |
SizeType | GetSliceStride () const |
virtual ImageIORegion | GetSplitRegionForWritingCanStreamWrite (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion) const |
| ImageIOBase () |
virtual void | ReadBufferAsASCII (std::istream &os, void *buffer, IOComponentType ctype, SizeType numberOfBytesToBeRead) |
bool | ReadBufferAsBinary (std::istream &os, void *buffer, SizeType numberOfBytesToBeRead) |
virtual void | Reset (const bool freeDynamic=true) |
void | Resize (const unsigned int numDimensions, const unsigned int *dimensions) |
virtual void | WriteBufferAsASCII (std::ostream &os, const void *buffer, IOComponentType ctype, SizeType numberOfBytesToWrite) |
| ~ImageIOBase () |
| LightProcessObject () |
| ~LightProcessObject () |
virtual void | GenerateData () |
| Object () |
bool | PrintObservers (std::ostream &os, Indent indent) const |
virtual void | SetTimeStamp (const TimeStamp &time) |
virtual | ~Object () |
virtual LightObject::Pointer | InternalClone () const |
| LightObject () |
virtual void | PrintHeader (std::ostream &os, Indent indent) const |
virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
virtual | ~LightObject () |
Class that defines how to read MINC2 file format. Note,like ITK, MINC2 is N dimensional and dimensions can be submitted in any arbitrary order. Here we make sure the dimensions are ordered as xspace, yspace, zspace, time and vector_dimension and so on or xfrequencey, yfrequency, zfrequency, tfrequency and vector_dimension and so on NOTE** This class only reads the regularly sampled dimensions as I am not sure how to deal with "iregularly sampled" dimensions yet!
- Author:
- Leila Baghdadi This code was contributed in the Insight Journal paper: "MINC2.0 IO Support for ITK" by Baghdadi L. http://hdl.handle.net/1926/191 http://www.insight-journal.org/browse/publication/88
Definition at line 61 of file itkMINC2ImageIO.h.