ITK  4.2.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Attributes | Protected Member Functions | Protected Attributes | Private Member Functions | Private Attributes
itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell > Class Template Reference

#include <itkMultiphaseDenseFiniteDifferenceImageFilter.h>

+ Inheritance diagram for itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >:
+ Collaboration diagram for itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >:

List of all members.

Public Types

typedef SmartPointer< const SelfConstPointer
typedef
NeighborhoodAlgorithm::ImageBoundaryFacesCalculator
< InputImageType
FaceCalculatorType
typedef
FaceCalculatorType::FaceListType 
FaceListType
typedef
Superclass::FeatureImagePointer 
FeatureImagePointer
typedef
Superclass::FeatureImageType 
FeatureImageType
typedef
Superclass::FeaturePixelType 
FeaturePixelType
typedef
Superclass::FeaturePointType 
FeaturePointType
typedef
Superclass::FeatureRegionType 
FeatureRegionType
typedef Superclass::FeatureSizeType FeatureSizeType
typedef
Superclass::FeatureSpacingType 
FeatureSpacingType
typedef
Superclass::FiniteDifferenceFunctionPointer 
FiniteDifferenceFunctionPointer
typedef
Superclass::FiniteDifferenceFunctionType 
FiniteDifferenceFunctionType
typedef Superclass::IdCellType IdCellType
typedef
Superclass::InputImagePointer 
InputImagePointer
typedef Superclass::InputImageType InputImageType
typedef Superclass::InputIndexType InputIndexType
typedef
Superclass::InputIndexValueType 
InputIndexValueType
typedef Superclass::InputPixelType InputPixelType
typedef Superclass::InputPointType InputPointType
typedef Superclass::InputRegionType InputRegionType
typedef Superclass::InputSizeType InputSizeType
typedef
Superclass::InputSizeValueType 
InputSizeValueType
typedef
Superclass::InputSpacingType 
InputSpacingType
typedef MaurerType::Pointer MaurerPointer
typedef
SignedMaurerDistanceMapImageFilter
< InputImageType,
InputImageType
MaurerType
typedef
FiniteDifferenceFunctionType::NeighborhoodType 
NeighborhoodIteratorType
typedef
Superclass::OutputImagePointer 
OutputImagePointer
typedef Superclass::OutputImageType OutputImageType
typedef Superclass::OutputIndexType OutputIndexType
typedef
Superclass::OutputIndexValueType 
OutputIndexValueType
typedef OutputImageType::PixelType OutputPixelType
typedef
Superclass::OutputRegionType 
OutputRegionType
typedef Superclass::OutputSizeType OutputSizeType
typedef SmartPointer< SelfPointer
typedef
MultiphaseDenseFiniteDifferenceImageFilter 
Self
typedef
Superclass::OutputSizeValueType 
SizeValueType
typedef
MultiphaseFiniteDifferenceImageFilter
< TInputImage, TFeatureImage,
TOutputImage, TFunction,
TIdCell > 
Superclass
typedef
ThresholdFilterType::Pointer 
ThresholdFilterPointer
typedef
BinaryThresholdImageFilter
< InputImageType,
InputImageType
ThresholdFilterType
typedef Superclass::TimeStepType TimeStepType
typedef InputImageType::ValueType ValueType
- Public Types inherited from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >
typedef Vector< float,
itkGetStaticConstMacro(ImageDimension) > 
CentroidVectorType
typedef
InputPointType::CoordRepType 
InputCoordRepType
typedef
InputImageType::OffsetValueType 
InputOffsetValueType
typedef
KdTreeGeneratorType::Pointer 
KdTreeGeneratorPointer
typedef
Statistics::KdTreeGenerator
< SampleType
KdTreeGeneratorType
typedef KdTreeType::Pointer KdTreePointer
typedef
KdTreeGeneratorType::KdTreeType 
KdTreeType
typedef
OutputImageType::SizeValueType 
OutputSizeValueType
typedef
FiniteDifferenceFunctionType::RadiusType 
RadiusType
typedef Statistics::ListSample
< CentroidVectorType
SampleType
typedef std::vector< TimeStepTypeTimeStepVectorType
typedef std::vector< IdCellTypeVectorIdCellType
- Public Types inherited from itk::InPlaceImageFilter< TFeatureImage, TOutputImage >
typedef
InputImageType::ConstPointer 
InputImageConstPointer
typedef InputImageType::PixelType InputImagePixelType
typedef InputImageType::RegionType InputImageRegionType
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
- Public Types inherited from itk::ImageToImageFilter< TFeatureImage, TOutputImage >
- Public Types inherited from itk::ImageSource< TOutputImage >
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
typedef DataObject::Pointer DataObjectPointer
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
- Public Types inherited from itk::ProcessObject
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
typedef std::vector
< DataObjectIdentifierType
NameArray
- Public Types inherited from itk::Object
- Public Types inherited from itk::LightObject

Public Member Functions

virtual const char * GetNameOfClass () const
virtual unsigned int GetReinitializeCounter ()
void SetFunctionCount (const IdCellType &n)
virtual void SetReinitializeCounter (unsigned int _arg)
 typedef (Concept::MultiplyOperator< OutputPixelType, double >) OutputTimesDoubleCheck
 typedef (Concept::AdditiveOperators< OutputPixelType >) OutputAdditiveOperatorsCheck
 typedef (Concept::Convertible< FeaturePixelType, OutputPixelType >) InputConvertibleToOutputCheck
- Public Member Functions inherited from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >
virtual const unsigned int & GetElapsedIterations ()
InputImagePointer GetLevelSet (const IdCellType &i)
virtual void SetElapsedIterations (unsigned int _arg)
void SetFunctionCount (const IdCellType &n)
void SetKdTree (KdTreeType *kdtree)
void SetLevelSet (const IdCellType &i, const InputImageType *levelSet)
void SetLookup (VectorIdCellType lookup)
virtual const
FiniteDifferenceFunctionPointer 
GetDifferenceFunction (const IdCellType &functionIndex) const
virtual void SetDifferenceFunction (const IdCellType &functionIndex, FiniteDifferenceFunctionPointer function)
virtual void SetNumberOfIterations (unsigned int _arg)
virtual const unsigned int & GetNumberOfIterations ()
virtual void SetUseImageSpacing (bool _arg)
virtual void UseImageSpacingOn ()
virtual void UseImageSpacingOff ()
virtual const bool & GetUseImageSpacing ()
virtual void SetMaximumRMSError (double _arg)
virtual const double & GetMaximumRMSError ()
virtual void SetRMSChange (double _arg)
virtual const double & GetRMSChange ()
virtual void SetInitializedState (bool _arg)
virtual const bool & GetInitializedState ()
virtual void InitializedStateOn ()
virtual void InitializedStateOff ()
virtual void SetManualReinitialization (bool _arg)
virtual const bool & GetManualReinitialization ()
virtual void ManualReinitializationOn ()
virtual void ManualReinitializationOff ()
- Public Member Functions inherited from itk::InPlaceImageFilter< TFeatureImage, TOutputImage >
virtual bool CanRunInPlace () const
virtual void SetInPlace (bool _arg)
virtual bool GetInPlace () const
virtual void InPlaceOn ()
virtual void InPlaceOff ()
- Public Member Functions inherited from itk::ImageToImageFilter< TFeatureImage, TOutputImage >
const InputImageTypeGetInput (void) const
const InputImageTypeGetInput (unsigned int idx) const
virtual void PopBackInput ()
virtual void PopFrontInput ()
virtual void PushBackInput (const InputImageType *image)
virtual void PushFrontInput (const InputImageType *image)
virtual void SetInput (const InputImageType *image)
virtual void SetInput (unsigned int, const TFeatureImage *image)
- Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageTypeGetOutput (unsigned int idx)
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
virtual void GraftOutput (DataObject *output)
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageTypeGetOutput (void)
const OutputImageTypeGetOutput (void) const
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
virtual void AbortGenerateDataOn ()
virtual void EnlargeOutputRequestedRegion (DataObject *)
virtual const bool & GetAbortGenerateData ()
NameArray GetInputNames () const
MultiThreader * GetMultiThreader () const
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType GetNumberOfInputs () const
DataObjectPointerArraySizeType GetNumberOfOutputs () const
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
NameArray GetOutputNames () const
virtual const float & GetProgress ()
NameArray GetRequiredInputNames () const
bool HasInput (const DataObjectIdentifierType &key) const
bool HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
virtual void PrepareOutputs ()
virtual void PropagateRequestedRegion (DataObject *output)
virtual void ResetPipeline ()
virtual void SetAbortGenerateData (bool _arg)
virtual void SetProgress (float _arg)
virtual void Update ()
virtual void UpdateLargestPossibleRegion ()
virtual void UpdateOutputData (DataObject *output)
virtual void UpdateOutputInformation ()
void UpdateProgress (float amount)
DataObjectPointerArray GetInputs ()
DataObjectPointerArray GetOutputs ()
DataObjectPointerArray GetIndexedInputs ()
DataObjectPointerArray GetIndexedOutputs ()
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
virtual void SetReleaseDataFlag (bool flag)
virtual bool GetReleaseDataFlag () const
void ReleaseDataFlagOn ()
void ReleaseDataFlagOff ()
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool & GetReleaseDataBeforeUpdateFlag ()
virtual void ReleaseDataBeforeUpdateFlagOn ()
virtual void ReleaseDataBeforeUpdateFlagOff ()
virtual void SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdTypeGetNumberOfThreads ()
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
unsigned long AddObserver (const EventObject &event, Command *) const
virtual LightObject::Pointer CreateAnother () const
virtual void DebugOff () const
virtual void DebugOn () const
CommandGetCommand (unsigned long tag)
bool GetDebug () const
MetaDataDictionaryGetMetaDataDictionary (void)
const MetaDataDictionaryGetMetaDataDictionary (void) const
virtual unsigned long GetMTime () const
virtual const TimeStampGetTimeStamp () const
bool HasObserver (const EventObject &event) const
void InvokeEvent (const EventObject &)
void InvokeEvent (const EventObject &) const
virtual void Modified () const
virtual void Register () const
void RemoveAllObservers ()
void RemoveObserver (unsigned long tag)
void SetDebug (bool debugFlag) const
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void SetReferenceCount (int)
virtual void UnRegister () const
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
virtual int GetReferenceCount () const
 itkCloneMacro (Self)
void Print (std::ostream &os, Indent indent=0) const

Static Public Attributes

static const unsigned int ImageDimension = Superclass::ImageDimension
- Static Public Attributes inherited from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >
- Static Public Attributes inherited from itk::InPlaceImageFilter< TFeatureImage, TOutputImage >
static const unsigned int InputImageDimension
static const unsigned int OutputImageDimension
- Static Public Attributes inherited from itk::ImageToImageFilter< TFeatureImage, TOutputImage >
- Static Public Attributes inherited from itk::ImageSource< TOutputImage >

Protected Member Functions

virtual void ApplyUpdate (TimeStepType dt)
virtual void CopyInputToOutput ()
 MultiphaseDenseFiniteDifferenceImageFilter ()
virtual void PostProcessOutput ()
virtual void PrintSelf (std::ostream &, Indent indent) const
 ~MultiphaseDenseFiniteDifferenceImageFilter ()
- Protected Member Functions inherited from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >
virtual void ApplyUpdate (TimeStepType dt)=0
virtual void GenerateData ()
virtual void GenerateInputRequestedRegion ()
virtual bool Halt ()
virtual void Initialize ()
 MultiphaseFiniteDifferenceImageFilter ()
TimeStepType ResolveTimeStep (const TimeStepVectorType &timeStepList, const std::vector< bool > &valid)
virtual bool ThreadedHalt (void *)
 ~MultiphaseFiniteDifferenceImageFilter ()
virtual void InitializeIteration ()
- Protected Member Functions inherited from itk::InPlaceImageFilter< TFeatureImage, TOutputImage >
virtual void AllocateOutputs ()
virtual bool GetRunningInPlace () const
 InPlaceImageFilter ()
virtual void ReleaseInputs ()
 ~InPlaceImageFilter ()
- Protected Member Functions inherited from itk::ImageToImageFilter< TFeatureImage, TOutputImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 ImageToImageFilter ()
virtual void VerifyInputInformation ()
 ~ImageToImageFilter ()
void PushBackInput (const DataObject *input)
void PushFrontInput (const DataObject *input)
- Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void AfterThreadedGenerateData ()
virtual void BeforeThreadedGenerateData ()
 ImageSource ()
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual ~ImageSource ()
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
virtual void AddOutput (DataObject *output)
bool AddRequiredInputName (const DataObjectIdentifierType &)
virtual void CacheInputReleaseDataFlags ()
virtual void GenerateOutputInformation ()
virtual void GenerateOutputRequestedRegion (DataObject *output)
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs ()
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs ()
bool IsIndexedName (const DataObjectIdentifierType &) const
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType MakeIndexFromName (const DataObjectIdentifierType &) const
DataObjectIdentifierType MakeNameFromIndex (DataObjectPointerArraySizeType) const
 ProcessObject ()
virtual void PropagateResetPipeline ()
virtual void RemoveInput (const DataObjectIdentifierType &key)
virtual void RemoveInput (DataObjectPointerArraySizeType)
virtual void RemoveOutput (const DataObjectIdentifierType &key)
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void RestoreInputReleaseDataFlags ()
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void SetPrimaryInput (DataObject *input)
virtual void SetPrimaryOutput (DataObject *output)
void SetRequiredInputNames (const NameArray &)
virtual void VerifyPreconditions ()
 ~ProcessObject ()
DataObjectGetInput (const DataObjectIdentifierType &key)
const DataObjectGetInput (const DataObjectIdentifierType &key) const
DataObjectGetInput (DataObjectPointerArraySizeType)
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
DataObjectGetPrimaryInput ()
const DataObjectGetPrimaryInput () const
DataObjectGetOutput (const DataObjectIdentifierType &key)
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
DataObjectGetPrimaryOutput ()
const DataObjectGetPrimaryOutput () const
- Protected Member Functions inherited from itk::Object
 Object ()
bool PrintObservers (std::ostream &os, Indent indent) const
virtual void SetTimeStamp (const TimeStamp &time)
virtual ~Object ()
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 LightObject ()
virtual void PrintHeader (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const
virtual ~LightObject ()

Protected Attributes

unsigned int m_ReinitializeCounter
- Protected Attributes inherited from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >
std::vector
< FiniteDifferenceFunctionPointer
m_DifferenceFunctions
unsigned int m_ElapsedIterations
IdCellType m_FunctionCount
KdTreePointer m_KdTree
std::vector< InputImagePointerm_LevelSet
VectorIdCellType m_Lookup
double m_MaximumRMSError
unsigned int m_NumberOfIterations
double m_RMSChange
bool m_UseImageSpacing

Private Member Functions

virtual void AllocateUpdateBuffer ()
virtual TimeStepType CalculateChange ()
 MultiphaseDenseFiniteDifferenceImageFilter (const Self &)
void operator= (const Self &)

Private Attributes

std::vector< InputImagePointerm_UpdateBuffers

Detailed Description

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
class itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >

This filter implements a layer of the finite difference solver hierarchy that performs ``dense'' iteration, ie. iteration over all pixels in the input and output at each change calculation and update step. Dense iteration is in contrast to a ``sparse'' iteration over a subset of the pixels. See documentation for FiniteDifferenceImageFilter for an overview of the iterative finite difference algorithm:

$u_{\mathbf{i}}^{n+1}=u^n_{\mathbf{i}}+\Delta u^n_{\mathbf{i}}\Delta t$
The generic code for performing iterations and updates at each time step is inherited from the parent class. This class defines an update buffer for $ \Delta $ and the methods CalculateChange() and ApplyUpdate(). These methods are designed to automatically thread their execution. $ \Delta $ is defined as an image of identical size and type as the output image.
As we descend through each layer in the hierarchy, we know more and more about the specific application of our filter. At this level, we have committed to iteration over each pixel in an image. We take advantage of that knowledge to multithread the iteration and update methods.
Inputs and Outputs
This is an image to image filter. The specific types of the images are not fixed at this level in the hierarchy.
How to use this class
This filter is only one layer in a branch the finite difference solver hierarchy. It does not define the function used in the CalculateChange() and it does not define the stopping criteria (Halt method). To use this class, subclass it to a specific instance that supplies a function and Halt() method.

Based on the paper:

   "An active contour model without edges"
    T. Chan and L. Vese.
    In Scale-Space Theories in Computer Vision, pages 141-151, 1999.
Author:
Mosaliganti K., Smith B., Gelas A., Gouaillard A., Megason S.

This code was taken from the Insight Journal paper:

"Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
http://www.insight-journal.org/browse/publication/642
http://hdl.handle.net/10380/3055

That is based on the papers:

"Level Set Segmentation: Active Contours without edge"
http://www.insight-journal.org/browse/publication/322
http://hdl.handle.net/1926/1532

and

"Level set segmentation using coupled active surfaces"
http://www.insight-journal.org/browse/publication/323
http://hdl.handle.net/1926/1533
See also:
FiniteDifferenceImageFilter

Definition at line 102 of file itkMultiphaseDenseFiniteDifferenceImageFilter.h.


Member Typedef Documentation

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef SmartPointer< const Self > itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ConstPointer
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef NeighborhoodAlgorithm::ImageBoundaryFacesCalculator< InputImageType > itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FaceCalculatorType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef FaceCalculatorType::FaceListType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FaceListType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::FeatureImagePointer itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeatureImagePointer
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::FeatureImageType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeatureImageType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::FeaturePixelType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeaturePixelType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::FeaturePointType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeaturePointType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::FeatureRegionType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeatureRegionType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::FeatureSizeType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeatureSizeType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::FeatureSpacingType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeatureSpacingType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::FiniteDifferenceFunctionPointer itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FiniteDifferenceFunctionPointer
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::FiniteDifferenceFunctionType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FiniteDifferenceFunctionType

The value type of the time step. This is distinct from PixelType because PixelType may often be a vector value, while the TimeStep is a scalar value.

Reimplemented from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

Reimplemented in itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >.

Definition at line 160 of file itkMultiphaseDenseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::IdCellType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::IdCellType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::InputImagePointer itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputImagePointer
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::InputImageType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputImageType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::InputIndexType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputIndexType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::InputIndexValueType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputIndexValueType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::InputPixelType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputPixelType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::InputPointType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputPointType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::InputRegionType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputRegionType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::InputSizeType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputSizeType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::InputSizeValueType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputSizeValueType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::InputSpacingType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputSpacingType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef MaurerType::Pointer itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::MaurerPointer
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef SignedMaurerDistanceMapImageFilter< InputImageType, InputImageType > itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::MaurerType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef FiniteDifferenceFunctionType::NeighborhoodType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::NeighborhoodIteratorType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::OutputImagePointer itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputImagePointer
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::OutputImageType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputImageType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::OutputIndexType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputIndexType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::OutputIndexValueType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputIndexValueType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef OutputImageType::PixelType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputPixelType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::OutputRegionType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputRegionType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::OutputSizeType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputSizeType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef SmartPointer< Self > itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::Pointer
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef MultiphaseDenseFiniteDifferenceImageFilter itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::Self
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::OutputSizeValueType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SizeValueType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell > itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::Superclass
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef ThresholdFilterType::Pointer itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ThresholdFilterPointer
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef BinaryThresholdImageFilter< InputImageType, InputImageType > itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ThresholdFilterType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef Superclass::TimeStepType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::TimeStepType
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
typedef InputImageType::ValueType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ValueType

Constructor & Destructor Documentation

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::MultiphaseDenseFiniteDifferenceImageFilter ( )
inlineprotected
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::~MultiphaseDenseFiniteDifferenceImageFilter ( )
inlineprotected
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::MultiphaseDenseFiniteDifferenceImageFilter ( const Self )
private

Member Function Documentation

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
virtual void itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::AllocateUpdateBuffer ( )
privatevirtual
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
virtual void itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ApplyUpdate ( TimeStepType  dt)
protectedvirtual

This method applies changes from the m_UpdateBuffer to the output using the ThreadedApplyUpdate() method and a multithreading mechanism. "dt" is the time step to use for the update of each pixel.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
virtual TimeStepType itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::CalculateChange ( )
privatevirtual

This method populates an update buffer with changes for each pixel in the output using the ThreadedCalculateChange() method and a multithreading mechanism. Returns value is a time step to be used for the update.

Implements itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
virtual void itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::CopyInputToOutput ( )
protectedvirtual

A simple method to copy the data from the input to the output. ( Supports "read-only" image adaptors in the case where the input image type converts to a different output image type. )

Implements itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
virtual const char* itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::GetNameOfClass ( ) const
virtual
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
virtual unsigned int itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::GetReinitializeCounter ( )
virtual
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
void itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::operator= ( const Self )
private

This method is called after the solution has been generated to allow subclasses to apply some further processing to the output.

Reimplemented from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

Reimplemented in itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
virtual void itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::PostProcessOutput ( )
protectedvirtual

This method is called after the solution has been generated to allow subclasses to apply some further processing to the output.

Reimplemented from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
virtual void itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
void itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SetFunctionCount ( const IdCellType n)
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
virtual void itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SetReinitializeCounter ( unsigned int  _arg)
virtual

End concept checking

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::typedef ( Concept::MultiplyOperator< OutputPixelType, double >  )

Begin concept checking This class requires OutputTimesDoubleCheck in the form of ( Concept::MultiplyOperator< OutputPixelType, double > )

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::typedef ( Concept::AdditiveOperators< OutputPixelType )

This class requires OutputAdditiveOperatorsCheck in the form of ( Concept::AdditiveOperators< OutputPixelType > )

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::typedef ( Concept::Convertible< FeaturePixelType, OutputPixelType )

This class requires InputConvertibleToOutputCheck in the form of ( Concept::Convertible< FeaturePixelType, OutputPixelType > )


Member Data Documentation

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
const unsigned int itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ImageDimension = Superclass::ImageDimension
static
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
unsigned int itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_ReinitializeCounter
protected
template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
std::vector< InputImagePointer > itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_UpdateBuffers
private

The buffer that holds the updates for an iteration of the algorithm.

Definition at line 226 of file itkMultiphaseDenseFiniteDifferenceImageFilter.h.


The documentation for this class was generated from the following file: