Public Types |
typedef SmartPointer< const Self > | ConstPointer |
typedef
Superclass::FeatureImageType | FeatureImageType |
typedef Superclass::OutputImageType | OutputImageType |
typedef SmartPointer< Self > | Pointer |
typedef
NarrowBandThresholdSegmentationLevelSetImageFilter | Self |
typedef
NarrowBandLevelSetImageFilter
< TInputImage, TFeatureImage,
TOutputPixelType, Image
< TOutputPixelType,::itk::GetImageDimension
< TInputImage >
::ImageDimension > > | Superclass |
typedef
ThresholdFunctionType::Pointer | ThresholdFunctionPointer |
typedef
ThresholdSegmentationLevelSetFunction
< OutputImageType,
FeatureImageType > | ThresholdFunctionType |
typedef Superclass::ValueType | ValueType |
Public Types inherited from itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > > |
typedef Superclass::IndexType | IndexType |
typedef Superclass::InputImageType | InputImageType |
typedef
SegmentationLevelSetFunction
< OutputImageType,
FeatureImageType > | SegmentationFunctionType |
typedef Superclass::TimeStepType | TimeStepType |
typedef
SegmentationFunctionType::VectorImageType | VectorImageType |
Public Types inherited from itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > > |
typedef BandNode< IndexType,
PixelType > | BandNodeType |
typedef
Superclass::FiniteDifferenceFunctionType | FiniteDifferenceFunctionType |
typedef NarrowBandType::Iterator | NarrowBandIterator |
typedef NarrowBandType::Pointer | NarrowBandPointer |
typedef NarrowBand< BandNodeType > | NarrowBandType |
typedef Superclass::PixelType | PixelType |
typedef NarrowBandType::RegionType | RegionType |
typedef TInputImage::PixelType | InputPixelType |
typedef NumericTraits
< InputPixelType >::ValueType | InputPixelValueType |
typedef
FiniteDifferenceFunctionType::NeighborhoodScalesType | NeighborhoodScalesType |
typedef Image
< TOutputPixelType,::itk::GetImageDimension
< TInputImage >
::ImageDimension >::PixelType | OutputPixelType |
typedef NumericTraits
< OutputPixelType >::ValueType | OutputPixelValueType |
typedef
FiniteDifferenceFunctionType::RadiusType | RadiusType |
typedef
InputImageType::ConstPointer | InputImageConstPointer |
typedef InputImageType::PixelType | InputImagePixelType |
typedef InputImageType::Pointer | InputImagePointer |
typedef InputImageType::RegionType | InputImageRegionType |
typedef
Superclass::OutputImagePixelType | OutputImagePixelType |
typedef
Superclass::OutputImagePointer | OutputImagePointer |
typedef
Superclass::OutputImageRegionType | OutputImageRegionType |
typedef
Superclass::DataObjectIdentifierType | DataObjectIdentifierType |
typedef DataObject::Pointer | DataObjectPointer |
typedef
Superclass::DataObjectPointerArraySizeType | DataObjectPointerArraySizeType |
typedef std::vector
< DataObjectPointer > | DataObjectPointerArray |
typedef std::vector
< DataObjectIdentifierType > | NameArray |
Public Member Functions |
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
ValueType | GetEdgeWeight () const |
ValueType | GetLowerThreshold () const |
virtual const char * | GetNameOfClass () const |
ValueType | GetSmoothingConductance () const |
int | GetSmoothingIterations () const |
ValueType | GetSmoothingTimeStep () const |
ValueType | GetUpperThreshold () const |
void | SetLowerThreshold (ValueType v) |
| typedef (Concept::HasNumericTraits< TOutputPixelType >) OutputHasNumericTraitsCheck |
|
void | SetUpperThreshold (ValueType v) |
|
void | SetEdgeWeight (ValueType v) |
|
void | SetSmoothingIterations (int v) |
|
void | SetSmoothingTimeStep (ValueType v) |
|
void | SetSmoothingConductance (ValueType v) |
Public Member Functions inherited from itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > > |
virtual const
SegmentationFunctionType::VectorImageType * | GetAdvectionImage () const |
ValueType | GetAdvectionScaling () const |
ValueType | GetCurvatureScaling () const |
virtual FeatureImageType * | GetFeatureImage () |
unsigned int | GetMaximumIterations () |
ValueType | GetPropagationScaling () const |
virtual SegmentationFunctionType * | GetSegmentationFunction () |
virtual const
SegmentationFunctionType::ImageType * | GetSpeedImage () const |
bool | GetUseNegativeFeatures () const |
virtual void | SetInitialImage (InputImageType *f) |
virtual void | SetMaximumRMSError (const double) |
virtual void | SetSegmentationFunction (SegmentationFunctionType *s) |
void | SetUseNegativeFeaturesOff () |
| typedef (Concept::HasNumericTraits< typename Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension >::PixelType >) OutputHasNumericTraitsCheck |
virtual void | SetFeatureImage (const FeatureImageType *f) |
void | SetUseNegativeFeaturesOn () |
void | SetUseNegativeFeatures (bool u) |
virtual void | SetReverseExpansionDirection (bool _arg) |
virtual bool | GetReverseExpansionDirection () const |
virtual void | ReverseExpansionDirectionOn () |
virtual void | ReverseExpansionDirectionOff () |
void | SetFeatureScaling (ValueType v) |
void | SetPropagationScaling (ValueType v) |
void | SetAdvectionScaling (ValueType v) |
void | SetCurvatureScaling (ValueType v) |
void | SetMaximumIterations (unsigned int i) |
Public Member Functions inherited from itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > > |
virtual void | CopyInputToOutput () |
float | GetNarrowBandInnerRadius () const |
float | GetNarrowBandTotalRadius () const |
void | InsertNarrowBandNode (const IndexType &index) |
void | InsertNarrowBandNode (const IndexType &index, const PixelType &value, const signed char &nodestate) |
virtual void | SetNarrowBand (NarrowBandType *ptr) |
virtual void | SetIsoSurfaceValue (ValueType _arg) |
virtual ValueType | GetIsoSurfaceValue () const |
void | InsertNarrowBandNode (const BandNodeType &node) |
void | SetNarrowBandTotalRadius (const float &val) |
void | SetNarrowBandInnerRadius (const float &val) |
virtual const
FiniteDifferenceFunctionType::Pointer & | GetDifferenceFunction () const |
virtual const IdentifierType & | GetElapsedIterations () |
virtual bool | GetIsInitialized () |
virtual void | SetDifferenceFunction (FiniteDifferenceFunctionType *_arg) |
virtual void | SetIsInitialized (bool _arg) |
void | SetStateToInitialized () |
void | SetStateToUninitialized () |
virtual void | SetNumberOfIterations (IdentifierType _arg) |
virtual const IdentifierType & | GetNumberOfIterations () |
virtual void | SetUseImageSpacing (bool _arg) |
virtual void | UseImageSpacingOn () |
virtual void | UseImageSpacingOff () |
virtual const bool & | GetUseImageSpacing () |
virtual const double & | GetMaximumRMSError () |
virtual void | SetRMSChange (double _arg) |
virtual const double & | GetRMSChange () |
virtual void | SetManualReinitialization (bool _arg) |
virtual const bool & | GetManualReinitialization () |
virtual void | ManualReinitializationOn () |
virtual void | ManualReinitializationOff () |
virtual bool | CanRunInPlace () const |
virtual void | SetInPlace (bool _arg) |
virtual bool | GetInPlace () const |
virtual void | InPlaceOn () |
virtual void | InPlaceOff () |
const InputImageType * | GetInput (void) const |
const InputImageType * | GetInput (unsigned int idx) const |
virtual void | PopBackInput () |
virtual void | PopFrontInput () |
virtual void | PushBackInput (const InputImageType *image) |
virtual void | PushFrontInput (const InputImageType *image) |
virtual void | SetInput (const InputImageType *image) |
virtual void | SetInput (unsigned int, const TInputImage *image) |
OutputImageType * | GetOutput (unsigned int idx) |
virtual void | GraftNthOutput (unsigned int idx, DataObject *output) |
virtual void | GraftOutput (DataObject *output) |
virtual void | GraftOutput (const DataObjectIdentifierType &key, DataObject *output) |
OutputImageType * | GetOutput (void) |
const OutputImageType * | GetOutput (void) const |
virtual
ProcessObject::DataObjectPointer | MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) |
virtual void | AbortGenerateDataOff () |
virtual void | AbortGenerateDataOn () |
virtual void | EnlargeOutputRequestedRegion (DataObject *) |
virtual const bool & | GetAbortGenerateData () |
NameArray | GetInputNames () const |
MultiThreader * | GetMultiThreader () const |
DataObjectPointerArraySizeType | GetNumberOfIndexedInputs () const |
DataObjectPointerArraySizeType | GetNumberOfInputs () const |
DataObjectPointerArraySizeType | GetNumberOfOutputs () const |
virtual
DataObjectPointerArraySizeType | GetNumberOfValidRequiredInputs () const |
NameArray | GetOutputNames () const |
virtual const float & | GetProgress () |
NameArray | GetRequiredInputNames () const |
bool | HasInput (const DataObjectIdentifierType &key) const |
bool | HasOutput (const DataObjectIdentifierType &key) const |
virtual DataObjectPointer | MakeOutput (const DataObjectIdentifierType &) |
virtual void | PrepareOutputs () |
virtual void | PropagateRequestedRegion (DataObject *output) |
virtual void | ResetPipeline () |
virtual void | SetAbortGenerateData (bool _arg) |
virtual void | SetProgress (float _arg) |
virtual void | Update () |
virtual void | UpdateLargestPossibleRegion () |
virtual void | UpdateOutputData (DataObject *output) |
virtual void | UpdateOutputInformation () |
void | UpdateProgress (float amount) |
DataObjectPointerArray | GetInputs () |
DataObjectPointerArray | GetOutputs () |
DataObjectPointerArray | GetIndexedInputs () |
DataObjectPointerArray | GetIndexedOutputs () |
DataObjectPointerArraySizeType | GetNumberOfIndexedOutputs () const |
virtual void | SetReleaseDataFlag (bool flag) |
virtual bool | GetReleaseDataFlag () const |
void | ReleaseDataFlagOn () |
void | ReleaseDataFlagOff () |
virtual void | SetReleaseDataBeforeUpdateFlag (bool _arg) |
virtual const bool & | GetReleaseDataBeforeUpdateFlag () |
virtual void | ReleaseDataBeforeUpdateFlagOn () |
virtual void | ReleaseDataBeforeUpdateFlagOff () |
virtual void | SetNumberOfThreads (ThreadIdType _arg) |
virtual const ThreadIdType & | GetNumberOfThreads () |
unsigned long | AddObserver (const EventObject &event, Command *) |
unsigned long | AddObserver (const EventObject &event, Command *) const |
virtual void | DebugOff () const |
virtual void | DebugOn () const |
Command * | GetCommand (unsigned long tag) |
bool | GetDebug () const |
MetaDataDictionary & | GetMetaDataDictionary (void) |
const MetaDataDictionary & | GetMetaDataDictionary (void) const |
virtual unsigned long | GetMTime () const |
virtual const TimeStamp & | GetTimeStamp () const |
bool | HasObserver (const EventObject &event) const |
void | InvokeEvent (const EventObject &) |
void | InvokeEvent (const EventObject &) const |
virtual void | Modified () const |
virtual void | Register () const |
void | RemoveAllObservers () |
void | RemoveObserver (unsigned long tag) |
void | SetDebug (bool debugFlag) const |
void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
virtual void | SetReferenceCount (int) |
virtual void | UnRegister () const |
virtual void | Delete () |
virtual int | GetReferenceCount () const |
| itkCloneMacro (Self) |
void | Print (std::ostream &os, Indent indent=0) const |
Protected Member Functions |
| NarrowBandThresholdSegmentationLevelSetImageFilter () |
| NarrowBandThresholdSegmentationLevelSetImageFilter (const Self &) |
void | operator= (const Self &) |
virtual void | PrintSelf (std::ostream &os, Indent indent) const |
| ~NarrowBandThresholdSegmentationLevelSetImageFilter () |
Protected Member Functions inherited from itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > > |
virtual void | CreateNarrowBand () |
void | GenerateData () |
virtual | ~NarrowBandLevelSetImageFilter () |
| NarrowBandLevelSetImageFilter () |
| NarrowBandLevelSetImageFilter (const Self &) |
virtual void | InitializeIteration () |
Protected Member Functions inherited from itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > > |
void | ClearNarrowBand () |
void | GetSplitRegion (const vcl_size_t &i, ThreadRegionType &splitRegion) |
virtual void | Initialize () |
| NarrowBandImageFilterBase () |
virtual void | PostProcessOutput () |
void | WaitForAll () |
virtual | ~NarrowBandImageFilterBase () |
| FiniteDifferenceImageFilter () |
virtual void | GenerateInputRequestedRegion () |
virtual bool | Halt () |
virtual TimeStepType | ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const |
virtual void | SetElapsedIterations (IdentifierType _arg) |
virtual bool | ThreadedHalt (void *) |
virtual | ~FiniteDifferenceImageFilter () |
virtual void | AllocateOutputs () |
virtual bool | GetRunningInPlace () const |
| InPlaceImageFilter () |
virtual void | ReleaseInputs () |
| ~InPlaceImageFilter () |
virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
| ImageToImageFilter () |
virtual void | VerifyInputInformation () |
| ~ImageToImageFilter () |
void | PushBackInput (const DataObject *input) |
void | PushFrontInput (const DataObject *input) |
virtual void | AfterThreadedGenerateData () |
virtual void | BeforeThreadedGenerateData () |
| ImageSource () |
virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion) |
virtual void | ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId) |
virtual | ~ImageSource () |
virtual void | AddInput (DataObject *input) |
virtual void | AddOutput (DataObject *output) |
bool | AddRequiredInputName (const DataObjectIdentifierType &) |
virtual void | CacheInputReleaseDataFlags () |
virtual void | GenerateOutputInformation () |
virtual void | GenerateOutputRequestedRegion (DataObject *output) |
virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () |
virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () |
bool | IsIndexedName (const DataObjectIdentifierType &) const |
bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
| itkLegacyMacro (virtual void RemoveInput(DataObject *input)) |
| itkLegacyMacro (virtual void RemoveOutput(DataObject *output)) |
| itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num)) |
| itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num)) |
DataObjectPointerArraySizeType | MakeIndexFromName (const DataObjectIdentifierType &) const |
DataObjectIdentifierType | MakeNameFromIndex (DataObjectPointerArraySizeType) const |
| ProcessObject () |
virtual void | PropagateResetPipeline () |
virtual void | RemoveInput (const DataObjectIdentifierType &key) |
virtual void | RemoveInput (DataObjectPointerArraySizeType) |
virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
virtual void | RestoreInputReleaseDataFlags () |
virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
virtual void | SetNthInput (DataObjectPointerArraySizeType num, DataObject *input) |
virtual void | SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output) |
void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
virtual void | SetOutput (const DataObjectIdentifierType &key, DataObject *output) |
virtual void | SetPrimaryInput (DataObject *input) |
virtual void | SetPrimaryOutput (DataObject *output) |
void | SetRequiredInputNames (const NameArray &) |
virtual void | VerifyPreconditions () |
| ~ProcessObject () |
DataObject * | GetInput (const DataObjectIdentifierType &key) |
const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
DataObject * | GetInput (DataObjectPointerArraySizeType) |
const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
DataObject * | GetPrimaryInput () |
const DataObject * | GetPrimaryInput () const |
DataObject * | GetOutput (const DataObjectIdentifierType &key) |
const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
DataObject * | GetOutput (DataObjectPointerArraySizeType idx) |
const DataObject * | GetOutput (DataObjectPointerArraySizeType idx) const |
DataObject * | GetPrimaryOutput () |
const DataObject * | GetPrimaryOutput () const |
| Object () |
bool | PrintObservers (std::ostream &os, Indent indent) const |
virtual void | SetTimeStamp (const TimeStamp &time) |
virtual | ~Object () |
virtual LightObject::Pointer | InternalClone () const |
| LightObject () |
virtual void | PrintHeader (std::ostream &os, Indent indent) const |
virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
virtual | ~LightObject () |
template<class TInputImage, class TFeatureImage, class TOutputPixelType = float>
class itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
Segments structures in images based on intensity values.
- IMPORTANT
- The SegmentationLevelSetImageFilter class and the ThresholdSegmentationLevelSetFunction class contain additional information necessary to the full understanding of how to use this filter.
- OVERVIEW
- This class is a level set method segmentation filter. It constructs a speed function which is close to zero at the upper and lower bounds of an intensity window, effectively locking the propagating front onto those edges. Elsewhere, the front will propagate quickly.
- INPUTS
- This filter requires two inputs. The first input is a seed image. This seed image must contain an isosurface that you want to use as the seed for your segmentation. It can be a binary, graylevel, or floating point image. The only requirement is that it contain a closed isosurface that you will identify as the seed by setting the IsosurfaceValue parameter of the filter. For a binary image you will want to set your isosurface value halfway between your on and off values (i.e. for 0's and 1's, use an isosurface value of 0.5).
- The second input is the feature image. This is the image from which the speed function will be calculated. For most applications, this is the image that you want to segment. The desired isosurface in your seed image should lie within the region of your feature image that you are trying to segment. Note that this filter does no preprocessing of the feature image before thresholding.
- See SegmentationLevelSetImageFilter for more information on Inputs.
- OUTPUTS
- The filter outputs a single, scalar, real-valued image. Positive values in the output image are inside the segmentated region and negative values in the image are outside of the inside region. The zero crossings of the image correspond to the position of the level set front.
- See SparseFieldLevelSetImageFilter and SegmentationLevelSetImageFilter for more information.
- PARAMETERS
- In addition to parameters described in SegmentationLevelSetImageFilter, this filter adds the UpperThreshold and LowerThreshold. See ThresholdSegmentationLevelSetFunction for a description of how these values affect the segmentation.
- See also:
- SegmentationLevelSetImageFilter
-
ThresholdSegmentationLevelSetFunction,
-
SparseFieldLevelSetImageFilter
Definition at line 86 of file itkNarrowBandThresholdSegmentationLevelSetImageFilter.h.