ITK  4.2.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Private Types | Private Member Functions | Private Attributes
itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage > Class Template Reference

#include <itkRGBGibbsPriorFilter.h>

+ Inheritance diagram for itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >:
+ Collaboration diagram for itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >:

List of all members.

Public Types

typedef TClassifiedImage ClassifiedImageType
typedef ImageClassifierBase
< TInputImage,
TClassifiedImage > 
ClassifierType
typedef SmartPointer< const SelfConstPointer
typedef TInputImage::IndexType IndexType
typedef Superclass::IndexValueType IndexValueType
typedef TInputImage::ConstPointer InputImageConstPointer
typedef
Superclass::InputImagePixelType 
InputImagePixelType
typedef TInputImage::Pointer InputImagePointer
typedef
Superclass::InputImageRegionConstIterator 
InputImageRegionConstIterator
typedef
Superclass::InputImageRegionIterator 
InputImageRegionIterator
typedef TInputImage InputImageType
typedef TInputImage::PixelType InputImageVecType
typedef TInputImage::PixelType InputPixelType
typedef TClassifiedImage::IndexType LabelledImageIndexType
typedef
Superclass::LabelledImagePixelType 
LabelledImagePixelType
typedef
Superclass::LabelledImageRegionIterator 
LabelledImageRegionIterator
typedef TClassifiedImage::Pointer LabelledImageType
typedef unsigned int LabelType
typedef SmartPointer< SelfPointer
typedef RGBGibbsPriorFilter Self
typedef MRFImageFilter
< TInputImage,
TClassifiedImage > 
Superclass
typedef TClassifiedImage::Pointer TrainingImageType
- Public Types inherited from itk::MRFImageFilter< TInputImage, TClassifiedImage >
typedef
InputImageFaceListType::iterator 
InputImageFaceListIterator
typedef
InputImageFacesCalculator::FaceListType 
InputImageFaceListType
typedef
NeighborhoodAlgorithm::ImageBoundaryFacesCalculator
< TInputImage > 
InputImageFacesCalculator
typedef
ConstNeighborhoodIterator
< TInputImage > 
InputImageNeighborhoodIterator
typedef
InputImageNeighborhoodIterator::RadiusType 
InputImageNeighborhoodRadiusType
typedef TInputImage::RegionType InputImageRegionType
typedef
LabelledImageFaceListType::iterator 
LabelledImageFaceListIterator
typedef
LabelledImageFacesCalculator::FaceListType 
LabelledImageFaceListType
typedef
NeighborhoodAlgorithm::ImageBoundaryFacesCalculator
< TClassifiedImage > 
LabelledImageFacesCalculator
typedef NeighborhoodIterator
< TClassifiedImage > 
LabelledImageNeighborhoodIterator
typedef
LabelledImageNeighborhoodIterator::RadiusType 
LabelledImageNeighborhoodRadiusType
typedef
TClassifiedImage::OffsetType 
LabelledImageOffsetType
typedef TClassifiedImage::Pointer LabelledImagePointer
typedef
TClassifiedImage::RegionType 
LabelledImageRegionType
typedef TInputImage::SizeType NeighborhoodRadiusType
typedef
Superclass::OutputImagePointer 
OutputImagePointer
typedef TInputImage::SizeType SizeType
enum  StopConditionType {
  MaximumNumberOfIterations = 1,
  ErrorTolerance
}
typedef TClassifiedImage::PixelType TrainingImagePixelType
typedef TClassifiedImage::Pointer TrainingImagePointer
- Public Types inherited from itk::ImageToImageFilter< TInputImage, TClassifiedImage >
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
- Public Types inherited from itk::ImageSource< TClassifiedImage >
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
typedef DataObject::Pointer DataObjectPointer
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
typedef TClassifiedImage OutputImageType
- Public Types inherited from itk::ProcessObject
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
typedef std::vector
< DataObjectIdentifierType
NameArray
- Public Types inherited from itk::Object
- Public Types inherited from itk::LightObject

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
LabelledImageType GetLabelledImage ()
virtual unsigned int GetMaximumNumberOfIterations () const
virtual const char * GetNameOfClass () const
virtual unsigned int GetNumberOfClasses () const
virtual void SetBoundaryGradient (unsigned int _arg)
void SetClassifier (typename ClassifierType::Pointer ptrToClassifier)
virtual void SetClusterSize (unsigned int _arg)
void SetLabelledImage (LabelledImageType LabelledImage)
virtual void SetMaximumNumberOfIterations (unsigned int _arg)
virtual void SetNumberOfClasses (unsigned int _arg)
virtual void SetObjectLabel (LabelType _arg)
virtual void SetObjectThreshold (double _arg)
virtual void SetStartPoint (IndexType _arg)
void SetTrainingImage (TrainingImageType image)
virtual void SetCliqueWeight_1 (double _arg)
virtual double GetCliqueWeight_1 () const
virtual void SetCliqueWeight_2 (double _arg)
virtual double GetCliqueWeight_2 () const
virtual void SetCliqueWeight_3 (double _arg)
virtual double GetCliqueWeight_3 () const
virtual void SetCliqueWeight_4 (double _arg)
virtual double GetCliqueWeight_4 () const
virtual void SetCliqueWeight_5 (double _arg)
virtual double GetCliqueWeight_5 () const
virtual void SetCliqueWeight_6 (double _arg)
virtual double GetCliqueWeight_6 () const
- Public Member Functions inherited from itk::MRFImageFilter< TInputImage, TClassifiedImage >
virtual std::vector< double > GetMRFNeighborhoodWeight ()
const NeighborhoodRadiusType GetNeighborhoodRadius () const
virtual const unsigned int & GetNumberOfIterations ()
virtual const StopConditionTypeGetStopCondition ()
virtual void SetMRFNeighborhoodWeight (std::vector< double > BetaMatrix)
void SetNeighborhoodRadius (const NeighborhoodRadiusType &)
void SetNeighborhoodRadius (const SizeValueType)
void SetNeighborhoodRadius (const SizeValueType *radiusArray)
 typedef (Concept::Convertible< unsigned int, LabelledImagePixelType >) UnsignedIntConvertibleToClassifiedCheck
 typedef (Concept::Convertible< LabelledImagePixelType, unsigned int >) ClassifiedConvertibleToUnsignedIntCheck
 typedef (Concept::Convertible< LabelledImagePixelType, int >) ClassifiedConvertibleToIntCheck
 typedef (Concept::Convertible< int, LabelledImagePixelType >) IntConvertibleToClassifiedCheck
 typedef (Concept::SameDimension< InputImageDimension, ClassifiedImageDimension >) SameDimensionCheck
virtual void SetErrorTolerance (double _arg)
virtual double GetErrorTolerance () const
virtual void SetSmoothingFactor (double _arg)
virtual double GetSmoothingFactor () const
- Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TClassifiedImage >
const InputImageTypeGetInput (void) const
const InputImageTypeGetInput (unsigned int idx) const
virtual void PopBackInput ()
virtual void PopFrontInput ()
virtual void PushBackInput (const InputImageType *image)
virtual void PushFrontInput (const InputImageType *image)
virtual void SetInput (const InputImageType *image)
virtual void SetInput (unsigned int, const TInputImage *image)
- Public Member Functions inherited from itk::ImageSource< TClassifiedImage >
OutputImageTypeGetOutput (unsigned int idx)
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
virtual void GraftOutput (DataObject *output)
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageTypeGetOutput (void)
const OutputImageTypeGetOutput (void) const
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
virtual void AbortGenerateDataOn ()
virtual const bool & GetAbortGenerateData ()
NameArray GetInputNames () const
MultiThreader * GetMultiThreader () const
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType GetNumberOfInputs () const
DataObjectPointerArraySizeType GetNumberOfOutputs () const
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
NameArray GetOutputNames () const
virtual const float & GetProgress ()
NameArray GetRequiredInputNames () const
bool HasInput (const DataObjectIdentifierType &key) const
bool HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
virtual void PrepareOutputs ()
virtual void PropagateRequestedRegion (DataObject *output)
virtual void ResetPipeline ()
virtual void SetAbortGenerateData (bool _arg)
virtual void SetProgress (float _arg)
virtual void Update ()
virtual void UpdateLargestPossibleRegion ()
virtual void UpdateOutputData (DataObject *output)
virtual void UpdateOutputInformation ()
void UpdateProgress (float amount)
DataObjectPointerArray GetInputs ()
DataObjectPointerArray GetOutputs ()
DataObjectPointerArray GetIndexedInputs ()
DataObjectPointerArray GetIndexedOutputs ()
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
virtual void SetReleaseDataFlag (bool flag)
virtual bool GetReleaseDataFlag () const
void ReleaseDataFlagOn ()
void ReleaseDataFlagOff ()
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool & GetReleaseDataBeforeUpdateFlag ()
virtual void ReleaseDataBeforeUpdateFlagOn ()
virtual void ReleaseDataBeforeUpdateFlagOff ()
virtual void SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdTypeGetNumberOfThreads ()
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
unsigned long AddObserver (const EventObject &event, Command *) const
virtual void DebugOff () const
virtual void DebugOn () const
CommandGetCommand (unsigned long tag)
bool GetDebug () const
MetaDataDictionaryGetMetaDataDictionary (void)
const MetaDataDictionaryGetMetaDataDictionary (void) const
virtual unsigned long GetMTime () const
virtual const TimeStampGetTimeStamp () const
bool HasObserver (const EventObject &event) const
void InvokeEvent (const EventObject &)
void InvokeEvent (const EventObject &) const
virtual void Modified () const
virtual void Register () const
void RemoveAllObservers ()
void RemoveObserver (unsigned long tag)
void SetDebug (bool debugFlag) const
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void SetReferenceCount (int)
virtual void UnRegister () const
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
virtual int GetReferenceCount () const
 itkCloneMacro (Self)
void Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions

static Pointer New ()

Static Public Attributes

static const unsigned int ImageDimension = TInputImage::ImageDimension
- Static Public Attributes inherited from itk::MRFImageFilter< TInputImage, TClassifiedImage >
static const unsigned int ClassifiedImageDimension = TClassifiedImage::ImageDimension
static const unsigned int InputImageDimension = TInputImage::ImageDimension
- Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TClassifiedImage >
static const unsigned int OutputImageDimension
- Static Public Attributes inherited from itk::ImageSource< TClassifiedImage >

Protected Member Functions

virtual void ApplyGibbsLabeller ()
virtual void ApplyGPImageFilter ()
virtual void GenerateData ()
virtual void MinimizeFunctional ()
 typedef (Concept::SameDimension< itkGetStaticConstMacro(InputImageType::ImageDimension), itkGetStaticConstMacro(ClassifiedImageType::ImageDimension) >) SameDimension
 typedef (Concept::SameDimension< itkGetStaticConstMacro(InputImageType::ImageDimension), 3 >) DimensionShouldBe3
- Protected Member Functions inherited from itk::MRFImageFilter< TInputImage, TClassifiedImage >
void Allocate ()
virtual void ApplyMRFImageFilter ()
virtual void DoNeighborhoodOperation (const InputImageNeighborhoodIterator &imageIter, LabelledImageNeighborhoodIterator &labelledIter, LabelStatusImageNeighborhoodIterator &labelStatusIter)
virtual void EnlargeOutputRequestedRegion (DataObject *)
virtual void GenerateInputRequestedRegion ()
virtual void GenerateOutputInformation ()
 MRFImageFilter ()
 ~MRFImageFilter ()
- Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TClassifiedImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 ImageToImageFilter ()
virtual void VerifyInputInformation ()
 ~ImageToImageFilter ()
void PushBackInput (const DataObject *input)
void PushFrontInput (const DataObject *input)
- Protected Member Functions inherited from itk::ImageSource< TClassifiedImage >
virtual void AfterThreadedGenerateData ()
virtual void AllocateOutputs ()
virtual void BeforeThreadedGenerateData ()
 ImageSource ()
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual ~ImageSource ()
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
virtual void AddOutput (DataObject *output)
bool AddRequiredInputName (const DataObjectIdentifierType &)
virtual void CacheInputReleaseDataFlags ()
virtual void GenerateOutputRequestedRegion (DataObject *output)
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs ()
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs ()
bool IsIndexedName (const DataObjectIdentifierType &) const
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType MakeIndexFromName (const DataObjectIdentifierType &) const
DataObjectIdentifierType MakeNameFromIndex (DataObjectPointerArraySizeType) const
 ProcessObject ()
virtual void PropagateResetPipeline ()
virtual void ReleaseInputs ()
virtual void RemoveInput (const DataObjectIdentifierType &key)
virtual void RemoveInput (DataObjectPointerArraySizeType)
virtual void RemoveOutput (const DataObjectIdentifierType &key)
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void RestoreInputReleaseDataFlags ()
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void SetPrimaryInput (DataObject *input)
virtual void SetPrimaryOutput (DataObject *output)
void SetRequiredInputNames (const NameArray &)
virtual void VerifyPreconditions ()
 ~ProcessObject ()
DataObjectGetInput (const DataObjectIdentifierType &key)
const DataObjectGetInput (const DataObjectIdentifierType &key) const
DataObjectGetInput (DataObjectPointerArraySizeType)
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
DataObjectGetPrimaryInput ()
const DataObjectGetPrimaryInput () const
DataObjectGetOutput (const DataObjectIdentifierType &key)
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
DataObjectGetPrimaryOutput ()
const DataObjectGetPrimaryOutput () const
- Protected Member Functions inherited from itk::Object
 Object ()
bool PrintObservers (std::ostream &os, Indent indent) const
virtual void SetTimeStamp (const TimeStamp &time)
virtual ~Object ()
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 LightObject ()
virtual void PrintHeader (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const
virtual ~LightObject ()

Private Types

typedef TInputImage::SizeType InputImageSizeType

Private Member Functions

double GibbsEnergy (unsigned int i, unsigned int k, unsigned int k1)
void GibbsTotalEnergy (int i)
void operator= (const Self &)
 RGBGibbsPriorFilter (const Self &)

Private Attributes

ClassifierType::Pointer m_ClassifierPtr
unsigned int m_ImageDepth
unsigned int m_ImageHeight
double m_ObjectThreshold
typedef vnl_matrix< double > MatrixType
 RGBGibbsPriorFilter ()
 ~RGBGibbsPriorFilter ()
void PrintSelf (std::ostream &os, Indent indent) const

Additional Inherited Members

- Protected Types inherited from itk::MRFImageFilter< TInputImage, TClassifiedImage >
typedef ImageRegionIterator
< LabelStatusImageType
LabelStatusImageIterator
typedef NeighborhoodIterator
< LabelStatusImageType
LabelStatusImageNeighborhoodIterator
typedef
LabelStatusImageType::Pointer 
LabelStatusImagePointer
typedef Image< int,
itkGetStaticConstMacro(InputImageDimension) > 
LabelStatusImageType
typedef
LabelStatusImageType::IndexType 
LabelStatusIndexType
typedef
LabelStatusImageType::RegionType 
LabelStatusRegionType
- Protected Types inherited from itk::ImageToImageFilter< TInputImage, TClassifiedImage >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType

Detailed Description

template<class TInputImage, class TClassifiedImage>
class itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >

The RGBGibbsPriorFilter applies Gibbs Prior model for the segmentation of MRF images.

The core of the method is based on the minimization of a Gibbsian energy function. This energy function f can be divided into three part: f = f_1 + f_2 + f_3; f_1 is related to the object homogeneity, f_2 is related to the boundary smoothness, f_3 is related to the constraint of the observation (or the noise model). The two force components f_1 and f_3 are minimized by the GradientEnergy method while f_2 is minized by the GibbsTotalEnergy method.

This filter only works with 3D images.

Definition at line 47 of file itkRGBGibbsPriorFilter.h.


Member Typedef Documentation

template<class TInputImage , class TClassifiedImage >
typedef TClassifiedImage itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::ClassifiedImageType

Type definitions for the training image.

Definition at line 80 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef ImageClassifierBase< TInputImage, TClassifiedImage > itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::ClassifierType

Type definitions for classifier to be used for the MRF lavbelling.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 96 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef SmartPointer< const Self > itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::ConstPointer

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 55 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef TInputImage::IndexType itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::IndexType

Definition at line 100 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef Superclass::IndexValueType itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::IndexValueType

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 69 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef TInputImage::ConstPointer itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::InputImageConstPointer

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 74 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef Superclass::InputImagePixelType itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::InputImagePixelType

Types from superclass.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 61 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef TInputImage::Pointer itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::InputImagePointer

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 73 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef Superclass::InputImageRegionConstIterator itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::InputImageRegionConstIterator

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 65 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef Superclass::InputImageRegionIterator itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::InputImageRegionIterator

Type definition for the input image region iterator

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 66 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef TInputImage::SizeType itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::InputImageSizeType
private
template<class TInputImage , class TClassifiedImage >
typedef TInputImage itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::InputImageType

A smart pointer to the input image type.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 72 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef TInputImage::PixelType itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::InputImageVecType

The type of input pixel.

Definition at line 99 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef TInputImage::PixelType itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::InputPixelType

Type definition for the input image pixel type.

Definition at line 77 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef TClassifiedImage::IndexType itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::LabelledImageIndexType

Type definition for the classified image index type.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 88 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef Superclass::LabelledImagePixelType itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::LabelledImagePixelType

Type definitions for the classified image pixel type. It has to be the same type as the training image.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 68 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef Superclass::LabelledImageRegionIterator itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::LabelledImageRegionIterator

Type definition for the input image region iterator

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 67 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef TClassifiedImage::Pointer itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::LabelledImageType

Type definitions for the labelled image. It is derived from the training image.

Definition at line 85 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef unsigned int itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::LabelType

Type used as identifier for the Labels

Warning:
-1 cannot be used as the identifier for unlabeled pixels the NumericTraits<>::max() value is used for indicating unlabeled pixels

Definition at line 93 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef vnl_matrix< double > itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::MatrixType

Specify the type of matrix to use.

Definition at line 157 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef SmartPointer< Self > itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::Pointer

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 54 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef RGBGibbsPriorFilter itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::Self

Standard "Self" typedef.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 52 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef MRFImageFilter< TInputImage, TClassifiedImage > itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::Superclass

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 53 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
typedef TClassifiedImage::Pointer itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::TrainingImageType

Definition at line 81 of file itkRGBGibbsPriorFilter.h.


Constructor & Destructor Documentation

template<class TInputImage , class TClassifiedImage >
itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::RGBGibbsPriorFilter ( )
protected

Specify the type of matrix to use.

template<class TInputImage , class TClassifiedImage >
itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::~RGBGibbsPriorFilter ( )
protected

Specify the type of matrix to use.

template<class TInputImage , class TClassifiedImage >
itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::RGBGibbsPriorFilter ( const Self )
private

End concept checking


Member Function Documentation

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::ApplyGibbsLabeller ( )
protectedvirtual
template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::ApplyGPImageFilter ( )
protectedvirtual
template<class TInputImage , class TClassifiedImage >
virtual::itk::LightObject::Pointer itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GenerateData ( void  )
protectedvirtual

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See also:
ThreadedGenerateData()

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

template<class TInputImage , class TClassifiedImage >
virtual double itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GetCliqueWeight_1 ( ) const
virtual

set and get the value for Clique weights

template<class TInputImage , class TClassifiedImage >
virtual double itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GetCliqueWeight_2 ( ) const
virtual

set and get the value for Clique weights

template<class TInputImage , class TClassifiedImage >
virtual double itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GetCliqueWeight_3 ( ) const
virtual

set and get the value for Clique weights

template<class TInputImage , class TClassifiedImage >
virtual double itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GetCliqueWeight_4 ( ) const
virtual

set and get the value for Clique weights

template<class TInputImage , class TClassifiedImage >
virtual double itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GetCliqueWeight_5 ( ) const
virtual

set and get the value for Clique weights

template<class TInputImage , class TClassifiedImage >
virtual double itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GetCliqueWeight_6 ( ) const
virtual

set and get the value for Clique weights

template<class TInputImage , class TClassifiedImage >
LabelledImageType itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GetLabelledImage ( void  )
inline

Get the labelled image.

Definition at line 109 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
virtual unsigned int itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GetMaximumNumberOfIterations ( ) const
virtual

Get the number of iterations of the Iterated Conditional Mode (ICM) algorithm.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

template<class TInputImage , class TClassifiedImage >
virtual const char* itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

template<class TInputImage , class TClassifiedImage >
virtual unsigned int itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GetNumberOfClasses ( ) const
virtual

Get the Number of classes.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

template<class TInputImage , class TClassifiedImage >
double itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GibbsEnergy ( unsigned int  i,
unsigned int  k,
unsigned int  k1 
)
private

calculate the energy in each cluster.

template<class TInputImage , class TClassifiedImage >
void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::GibbsTotalEnergy ( int  i)
private

region size smaller than the threshold will be erased. the label for object region. the channel number in the image. the point give lowest value of H-1 in neighbor. for region erase. for region erase. weights for different clique configuration. weight for cliques that v/h smooth boundayr weight for clique that has an intermadiate smooth boundary weight for clique that has a diagonal smooth boundary weight for clique consists only object pixels weight for clique consists only background pixels weight for clique other than these calculate H_2.

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::MinimizeFunctional ( )
protectedvirtual

allocate memory space for the filter.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

template<class TInputImage , class TClassifiedImage >
static Pointer itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::New ( )
static

Method for creation through the object factory.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

template<class TInputImage , class TClassifiedImage >
void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::operator= ( const Self )
private

PushBackInput(), PushFronInput() in the public section force the input to be the type expected by an ImageToImageFilter. However, these methods end of "hiding" the versions from the superclass (ProcessObject) whose arguments are DataObjects. Here, we re-expose the versions from ProcessObject to avoid warnings about hiding methods from the superclass.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

template<class TInputImage , class TClassifiedImage >
void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Specify the type of matrix to use.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetBoundaryGradient ( unsigned int  _arg)
virtual
template<class TInputImage , class TClassifiedImage >
void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetClassifier ( typename ClassifierType::Pointer  ptrToClassifier)

Set the pointer to the classifer being used.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetCliqueWeight_1 ( double  _arg)
virtual

set and get the value for Clique weights

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetCliqueWeight_2 ( double  _arg)
virtual

set and get the value for Clique weights

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetCliqueWeight_3 ( double  _arg)
virtual

set and get the value for Clique weights

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetCliqueWeight_4 ( double  _arg)
virtual

set and get the value for Clique weights

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetCliqueWeight_5 ( double  _arg)
virtual

set and get the value for Clique weights

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetCliqueWeight_6 ( double  _arg)
virtual

set and get the value for Clique weights

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetClusterSize ( unsigned int  _arg)
virtual

Set the threshold for the object size.

template<class TInputImage , class TClassifiedImage >
void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetLabelledImage ( LabelledImageType  LabelledImage)

Set the labelled image.

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetMaximumNumberOfIterations ( unsigned int  _arg)
virtual

Set/Get the number of iteration of the Iterated Conditional Mode (ICM) algorithm. A default value is set at 50 iterations.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetNumberOfClasses ( unsigned int  _arg)
virtual

Set the Number of classes.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetObjectLabel ( LabelType  _arg)
virtual

Set the label for the object region.

template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetObjectThreshold ( double  _arg)
virtual
template<class TInputImage , class TClassifiedImage >
virtual void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetStartPoint ( IndexType  _arg)
virtual
template<class TInputImage , class TClassifiedImage >
void itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::SetTrainingImage ( TrainingImageType  image)

Set the image required for training type classifiers.

template<class TInputImage , class TClassifiedImage >
itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::typedef ( Concept::SameDimension< itkGetStaticConstMacro(InputImageType::ImageDimension), itkGetStaticConstMacro(ClassifiedImageType::ImageDimension) >  )
protected

Begin concept checking This class requires SameDimension in the form of ( Concept::SameDimension< itkGetStaticConstMacro(InputImageType::ImageDimension), itkGetStaticConstMacro(ClassifiedImageType::ImageDimension) > )

template<class TInputImage , class TClassifiedImage >
itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::typedef ( Concept::SameDimension< itkGetStaticConstMacro(InputImageType::ImageDimension), 3 >  )
protected

This class requires DimensionShouldBe3 in the form of ( Concept::SameDimension< itkGetStaticConstMacro(InputImageType::ImageDimension), 3 > )


Member Data Documentation

template<class TInputImage , class TClassifiedImage >
const unsigned int itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::ImageDimension = TInputImage::ImageDimension
static

Extract the input image dimension.

Definition at line 137 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
ClassifierType::Pointer itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::m_ClassifierPtr
private

the input image to train the filter. output the number of class need to be classified. number of the iteration.

Reimplemented from itk::MRFImageFilter< TInputImage, TClassifiedImage >.

Definition at line 210 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
unsigned int itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::m_ImageDepth
private

Definition at line 234 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
unsigned int itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::m_ImageHeight
private

the threshold for the existence of a boundary. weight for H_1 weight for H_2 define the start region of the object. number of SA iterations. array for the state of each pixel. the medium image to store intermedium result for SA algo. the seed of object image size.

Definition at line 233 of file itkRGBGibbsPriorFilter.h.

template<class TInputImage , class TClassifiedImage >
double itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >::m_ObjectThreshold
private

method to return 1 when a equal to b. help to erase the small region. erase the small region. create the intermedium image. calculate H_1.

Definition at line 286 of file itkRGBGibbsPriorFilter.h.


The documentation for this class was generated from the following file: