#include <itkTimeVaryingVelocityFieldTransform.h>

Inheritance diagram for itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >:

Collaboration diagram for itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >:

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DerivativeType	DerivativeType
typedef TimeVaryingVelocityFieldType::DirectionType	DirectionType
typedef Superclass::DisplacementFieldType	DisplacementFieldType
typedef DisplacementFieldType::PixelType	DisplacementVectorType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InputVectorType	InputVectorType
typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer
typedef Superclass::JacobianType	JacobianType
typedef Superclass::NumberOfParametersType	NumberOfParametersType
typedef ImageVectorOptimizerParametersHelper < ScalarType, OutputVectorType::Dimension, itkGetStaticConstMacro(Dimension)+1 >	OptimizerParametersHelperType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::OutputVectorType	OutputVectorType
typedef Superclass::ParametersType	ParametersType
typedef ParametersType::ValueType	ParametersValueType
typedef SmartPointer< Self >	Pointer
typedef TimeVaryingVelocityFieldType::PointType	PointType
typedef Superclass::ScalarType	ScalarType
typedef TimeVaryingVelocityFieldTransform	Self
typedef TimeVaryingVelocityFieldType::SizeType	SizeType
typedef TimeVaryingVelocityFieldType::SpacingType	SpacingType
typedef DisplacementFieldTransform < TScalar, NDimensions >	Superclass
typedef TimeVaryingVelocityFieldType::DirectionType	TimeVaryingVelocityFieldDirectionType
typedef TimeVaryingVelocityFieldInterpolatorType::Pointer	TimeVaryingVelocityFieldInterpolatorPointer
typedef VectorInterpolateImageFunction < TimeVaryingVelocityFieldType, ScalarType >	TimeVaryingVelocityFieldInterpolatorType
typedef TimeVaryingVelocityFieldType::Pointer	TimeVaryingVelocityFieldPointer
typedef TimeVaryingVelocityFieldType::PointType	TimeVaryingVelocityFieldPointType
typedef TimeVaryingVelocityFieldType::SpacingType	TimeVaryingVelocityFieldSpacingType
typedef Image < OutputVectorType, TimeVaryingVelocityFieldDimension >	TimeVaryingVelocityFieldType
typedef Transform< TScalar, NDimensions, NDimensions > ::Pointer	TransformPointer
Public Types inherited from itk::DisplacementFieldTransform< TScalar, NDimensions >
typedef DisplacementFieldType::Pointer	DisplacementFieldPointer
typedef DisplacementFieldType::IndexType	IndexType
typedef Superclass::InputCovariantVectorType	InputCovariantVectorType
typedef Superclass::InputDiffusionTensor3DType	InputDiffusionTensor3DType
typedef CovariantVector < ScalarType, InputDiffusionTensor3DType::Dimension >	InputTensorEigenVectorType
typedef Superclass::InputVectorPixelType	InputVectorPixelType
typedef Superclass::InputVnlVectorType	InputVnlVectorType
typedef VectorInterpolateImageFunction < DisplacementFieldType, ScalarType >	InterpolatorType
typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType
typedef Superclass::OutputDiffusionTensor3DType	OutputDiffusionTensor3DType
typedef CovariantVector < ScalarType, OutputDiffusionTensor3DType::Dimension >	OutputTensorEigenVectorType
typedef Superclass::OutputVectorPixelType	OutputVectorPixelType
typedef Superclass::OutputVnlVectorType	OutputVnlVectorType
typedef DisplacementFieldType::PixelType	PixelType
typedef DisplacementFieldType::RegionType	RegionType
Public Types inherited from itk::Transform< TScalar, NDimensions, NDimensions >
typedef Matrix< double, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)>	DirectionChangeMatrix
typedef Matrix< double, itkGetStaticConstMacro(InputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)>	InputDirectionMatrix
typedef SymmetricSecondRankTensor < TScalar, NInputDimensions >	InputSymmetricSecondRankTensorType
typedef Transform< TScalar, NOutputDimensions, NInputDimensions >	InverseTransformBaseType
typedef Matrix< TScalar, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)>	MatrixType
typedef Matrix< double, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(OutputSpaceDimension)>	OutputDirectionMatrix
typedef SymmetricSecondRankTensor < TScalar, NOutputDimensions >	OutputSymmetricSecondRankTensorType
Public Types inherited from itk::TransformBase
Public Types inherited from itk::Object
Public Types inherited from itk::LightObject

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
bool	GetInverse (Self *inverse) const
virtual InverseTransformBasePointer	GetInverseTransform () const
virtual ScalarType	GetLowerTimeBound () const
virtual const char *	GetNameOfClass () const
virtual unsigned int	GetNumberOfIntegrationSteps () const
NumberOfParametersType	GetNumberOfLocalParameters () const
virtual TimeVaryingVelocityFieldType *	GetTimeVaryingVelocityField ()
virtual const TimeVaryingVelocityFieldInterpolatorType *	GetTimeVaryingVelocityFieldInterpolator ()
virtual ScalarType	GetUpperTimeBound () const
virtual bool	HasLocalSupport () const
virtual void	IntegrateVelocityField ()
virtual bool	IsLinear () const
virtual void	SetDisplacementField (DisplacementFieldType *_arg)
virtual void	SetFixedParameters (const ParametersType &)
virtual void	SetLowerTimeBound (ScalarType _arg)
virtual void	SetNumberOfIntegrationSteps (unsigned int _arg)
virtual void	SetParameters (const ParametersType &)
virtual void	SetTimeVaryingVelocityField (TimeVaryingVelocityFieldType *)
virtual void	SetTimeVaryingVelocityFieldInterpolator (TimeVaryingVelocityFieldInterpolatorType *_arg)
virtual void	SetUpperTimeBound (ScalarType _arg)
virtual void	UpdateTransformParameters (const DerivativeType &, ScalarType factor=1.0)
Public Member Functions inherited from itk::DisplacementFieldTransform< TScalar, NDimensions >
virtual void	ComputeInverseJacobianWithRespectToPosition (const InputPointType &x, JacobianType &j) const
virtual void	ComputeJacobianWithRespectToParameters (const IndexType &, JacobianType &j) const
virtual void	ComputeJacobianWithRespectToPosition (const InputPointType &x, JacobianType &j) const
virtual void	ComputeJacobianWithRespectToPosition (const IndexType &x, JacobianType &j) const
virtual DisplacementFieldType *	GetDisplacementField ()
virtual const unsigned long &	GetDisplacementFieldSetTime ()
virtual void	GetInverseJacobianOfForwardFieldWithRespectToPosition (const InputPointType &point, JacobianType &jacobian, bool useSVD=false) const
virtual void	GetInverseJacobianOfForwardFieldWithRespectToPosition (const IndexType &index, JacobianType &jacobian, bool useSVD=false) const
virtual OutputVectorPixelType	TransformCovariantVector (const InputVectorPixelType &) const
OutputVectorPixelType	TransformDiffusionTensor (const InputVectorPixelType &) const
virtual OutputPointType	TransformPoint (const InputPointType &thisPoint) const
virtual OutputVectorPixelType	TransformVector (const InputVectorPixelType &) const
virtual OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const
virtual void	UpdateTransformParameters (const DerivativeType &update, ScalarType factor=1.0)
virtual DisplacementFieldType *	GetInverseDisplacementField ()
virtual void	SetInverseDisplacementField (DisplacementFieldType *inverseDisplacementField)
virtual InterpolatorType *	GetInterpolator ()
virtual void	SetInterpolator (InterpolatorType *interpolator)
virtual OutputVectorType	TransformVector (const InputVectorType &) const
OutputDiffusionTensor3DType	TransformDiffusionTensor (const InputDiffusionTensor3DType &) const
virtual OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const
virtual void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &j) const
Public Member Functions inherited from itk::Transform< TScalar, NDimensions, NDimensions >
virtual void	ComputeInverseJacobianWithRespectToPosition (const InputPointType &x, JacobianType &jacobian) const
virtual void	ComputeJacobianWithRespectToPosition (const InputPointType &, JacobianType &) const
virtual const ParametersType &	GetFixedParameters (void) const
unsigned int	GetInputSpaceDimension (void) const
virtual NumberOfParametersType	GetNumberOfParameters (void) const
unsigned int	GetOutputSpaceDimension (void) const
virtual const ParametersType &	GetParameters (void) const
virtual std::string	GetTransformTypeAsString () const
	itkCloneMacro (Self)
virtual void	SetParametersByValue (const ParametersType &p)
virtual OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const
virtual OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &vector, const InputPointType &point) const
virtual OutputVectorPixelType	TransformCovariantVector (const InputVectorPixelType &) const
virtual OutputVectorPixelType	TransformCovariantVector (const InputVectorPixelType &vector, const InputPointType &point) const
virtual OutputDiffusionTensor3DType	TransformDiffusionTensor3D (const InputDiffusionTensor3DType &) const
virtual OutputDiffusionTensor3DType	TransformDiffusionTensor3D (const InputDiffusionTensor3DType &tensor, const InputPointType &point) const
virtual OutputVectorPixelType	TransformDiffusionTensor3D (const InputVectorPixelType &) const
virtual OutputVectorPixelType	TransformDiffusionTensor3D (const InputVectorPixelType &tensor, const InputPointType &point) const
virtual OutputPointType	TransformPoint (const InputPointType &) const =0
virtual OutputSymmetricSecondRankTensorType	TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &tensor, const InputPointType &point) const
virtual OutputSymmetricSecondRankTensorType	TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &) const
virtual OutputVectorPixelType	TransformSymmetricSecondRankTensor (const InputVectorPixelType &) const
virtual OutputVectorPixelType	TransformSymmetricSecondRankTensor (const InputVectorPixelType &tensor, const InputPointType &point) const
virtual OutputVectorType	TransformVector (const InputVectorType &) const
virtual OutputVectorType	TransformVector (const InputVectorType &vector, const InputPointType &point) const
virtual OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const
virtual OutputVnlVectorType	TransformVector (const InputVnlVectorType &vector, const InputPointType &point) const
virtual OutputVectorPixelType	TransformVector (const InputVectorPixelType &) const
virtual OutputVectorPixelType	TransformVector (const InputVectorPixelType &vector, const InputPointType &point) const
virtual void	UpdateTransformParameters (const DerivativeType &update, TScalarfactor=1.0)
virtual void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const

Static Public Member Functions
static Pointer	New ()

Static Public Attributes
static const unsigned int	Dimension = NDimensions
static const unsigned int	TimeVaryingVelocityFieldDimension = NDimensions+1
Static Public Attributes inherited from itk::DisplacementFieldTransform< TScalar, NDimensions >
Static Public Attributes inherited from itk::Transform< TScalar, NDimensions, NDimensions >
static const unsigned int	InputSpaceDimension
static const unsigned int	OutputSpaceDimension

Protected Member Functions
DisplacementFieldType::Pointer	CopyDisplacementField (const DisplacementFieldType *toCopy) const
virtual LightObject::Pointer	InternalClone () const
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	SetFixedParametersFromTimeVaryingVelocityField ()
	TimeVaryingVelocityFieldTransform ()
virtual	~TimeVaryingVelocityFieldTransform ()
Protected Member Functions inherited from itk::DisplacementFieldTransform< TScalar, NDimensions >
	DisplacementFieldTransform ()
virtual	~DisplacementFieldTransform ()
Protected Member Functions inherited from itk::Transform< TScalar, NDimensions, NDimensions >
OutputDiffusionTensor3DType	PreservationOfPrincipalDirectionDiffusionTensor3DReorientation (const InputDiffusionTensor3DType, const JacobianType) const
	Transform ()
	Transform (NumberOfParametersType NumberOfParameters)
virtual	~Transform ()
Protected Member Functions inherited from itk::TransformBase
	TransformBase ()
virtual	~TransformBase ()
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Protected Attributes
ScalarType	m_LowerTimeBound
unsigned int	m_NumberOfIntegrationSteps
TimeVaryingVelocityFieldType::Pointer	m_TimeVaryingVelocityField
TimeVaryingVelocityFieldInterpolatorPointer	m_TimeVaryingVelocityFieldInterpolator
ScalarType	m_UpperTimeBound
Protected Attributes inherited from itk::DisplacementFieldTransform< TScalar, NDimensions >
DisplacementFieldType::Pointer	m_DisplacementField
unsigned long	m_DisplacementFieldSetTime
InterpolatorType::Pointer	m_Interpolator
DisplacementFieldType::Pointer	m_InverseDisplacementField
JacobianType	m_IdentityJacobian
Protected Attributes inherited from itk::Transform< TScalar, NDimensions, NDimensions >
DirectionChangeMatrix	m_DirectionChange
ParametersType	m_FixedParameters
ParametersType	m_Parameters

Private Member Functions
void	operator= (const Self &)
	TimeVaryingVelocityFieldTransform (const Self &)

Detailed Description

template<class TScalar, unsigned int NDimensions>
class itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >

Transform objects based on integration of a time-varying velocity field.

Diffeomorphisms are topology-preserving mappings that are useful for describing biologically plausible deformations. Mathematically, a diffeomorphism, $\phi$ , is generated from a time-varying velocity field, v, as described by the first-order differential equation:

$v(\phi(x,t), t) = \frac{d\phi(x, t)}{dt}, \phi(x, 0) = x$

In this class, the input is the time-varying velocity field. The output diffeomorphism is produced using fourth order Runge-Kutta.

Warning:: The output deformation field needs to have dimensionality of 1 less than the input time-varying velocity field. It is assumed that the last dimension of the time-varying velocity field corresponds to Time, and the other dimensions represent Space.

Author:: Nick Tustison; Brian Avants

Definition at line 56 of file itkTimeVaryingVelocityFieldTransform.h.

Member Typedef Documentation

template<class TScalar , unsigned int NDimensions>

typedef SmartPointer<const Self> itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::ConstPointer

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 64 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Superclass::DerivativeType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::DerivativeType

Derivative type

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 95 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef TimeVaryingVelocityFieldType::DirectionType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::DirectionType

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Definition at line 121 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Superclass::DisplacementFieldType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::DisplacementFieldType

Define the displacement field type and corresponding interpolator type.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 123 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef DisplacementFieldType::PixelType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::DisplacementVectorType

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 124 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Superclass::InputPointType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::InputPointType

Standard coordinate point type for this class.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 87 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Superclass::InputVectorType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::InputVectorType

Standard vector type for this class.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 91 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Superclass:: InverseTransformBasePointer itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::InverseTransformBasePointer

InverseTransform type.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 70 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Superclass::JacobianType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::JacobianType

Jacobian type.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 84 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Superclass::NumberOfParametersType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::NumberOfParametersType

The number of parameters defininig this transform.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 81 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef ImageVectorOptimizerParametersHelper<ScalarType, OutputVectorType::Dimension, itkGetStaticConstMacro( Dimension ) + 1> itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::OptimizerParametersHelperType

Define the internal parameter helper used to access the field

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Definition at line 129 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Superclass::OutputPointType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::OutputPointType

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 88 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Superclass::OutputVectorType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::OutputVectorType

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 92 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Superclass::ParametersType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::ParametersType

Type of the input parameters.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 79 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef ParametersType::ValueType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::ParametersValueType

Type of the input parameters.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 80 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef SmartPointer<Self> itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::Pointer

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 63 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef TimeVaryingVelocityFieldType::PointType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::PointType

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Definition at line 119 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Superclass::ScalarType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::ScalarType

Scalar type.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 76 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef TimeVaryingVelocityFieldTransform itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::Self

Standard class typedefs.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 61 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef TimeVaryingVelocityFieldType::SizeType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::SizeType

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Definition at line 118 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef TimeVaryingVelocityFieldType::SpacingType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::SpacingType

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Definition at line 120 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef DisplacementFieldTransform<TScalar, NDimensions> itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::Superclass

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 62 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef TimeVaryingVelocityFieldType::DirectionType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::TimeVaryingVelocityFieldDirectionType

Definition at line 113 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef TimeVaryingVelocityFieldInterpolatorType::Pointer itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::TimeVaryingVelocityFieldInterpolatorPointer

Definition at line 116 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef VectorInterpolateImageFunction<TimeVaryingVelocityFieldType, ScalarType> itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::TimeVaryingVelocityFieldInterpolatorType

Definition at line 115 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef TimeVaryingVelocityFieldType::Pointer itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::TimeVaryingVelocityFieldPointer

Reimplemented in itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 110 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef TimeVaryingVelocityFieldType::PointType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::TimeVaryingVelocityFieldPointType

Definition at line 111 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef TimeVaryingVelocityFieldType::SpacingType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::TimeVaryingVelocityFieldSpacingType

Definition at line 112 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Image<OutputVectorType, TimeVaryingVelocityFieldDimension> itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::TimeVaryingVelocityFieldType

Define the time-varying velocity field type and corresponding interpolator type.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 109 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

typedef Transform<TScalar,NDimensions,NDimensions>::Pointer itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::TransformPointer

Definition at line 97 of file itkTimeVaryingVelocityFieldTransform.h.

Constructor & Destructor Documentation

template<class TScalar , unsigned int NDimensions>

itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::TimeVaryingVelocityFieldTransform ( )

protected

template<class TScalar , unsigned int NDimensions>

virtual itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::~TimeVaryingVelocityFieldTransform ( )

protectedvirtual

template<class TScalar , unsigned int NDimensions>

itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::TimeVaryingVelocityFieldTransform ( const Self & )

private

Member Function Documentation

template<class TScalar , unsigned int NDimensions>

DisplacementFieldType::Pointer itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::CopyDisplacementField ( const DisplacementFieldType * toCopy ) const

protected

template<class TScalar , unsigned int NDimensions>

virtual::itk::LightObject::Pointer itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::CreateAnother ( void ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

template<class TScalar , unsigned int NDimensions>

bool itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::GetInverse ( Self * inverse ) const

Return an inverse of this transform.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

template<class TScalar , unsigned int NDimensions>

virtual InverseTransformBasePointer itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::GetInverseTransform ( ) const

virtual

Return an inverse of this transform.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

template<class TScalar , unsigned int NDimensions>

virtual ScalarType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::GetLowerTimeBound ( ) const

virtual

Get the lower time bound defining the integration domain of the transform. We assume that the total possible time domain is [0,1]

template<class TScalar , unsigned int NDimensions>

virtual const char* itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

template<class TScalar , unsigned int NDimensions>

virtual unsigned int itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::GetNumberOfIntegrationSteps ( ) const

virtual

Get the number of integration steps used in the Runge-Kutta solution of the initial value problem. Default = 100;

template<class TScalar , unsigned int NDimensions>

NumberOfParametersType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::GetNumberOfLocalParameters ( void ) const

inlinevirtual

Get the number of local parameters

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Definition at line 179 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

virtual TimeVaryingVelocityFieldType* itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::GetTimeVaryingVelocityField ( )

virtual

Get the time-varying deformation field.

template<class TScalar , unsigned int NDimensions>

virtual const TimeVaryingVelocityFieldInterpolatorType* itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::GetTimeVaryingVelocityFieldInterpolator ( )

virtual

Get the interpolator for the time-varying velocity field.

template<class TScalar , unsigned int NDimensions>

virtual ScalarType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::GetUpperTimeBound ( ) const

virtual

Get the upper time bound defining the integration domain of the transform. We assume that the total possible time domain is [0,1]

template<class TScalar , unsigned int NDimensions>

virtual bool itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::HasLocalSupport ( ) const

inlinevirtual

Does the transform have local support

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Definition at line 185 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

virtual void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::IntegrateVelocityField ( )

virtual

Trigger the computation of the displacement field by integrating the time-varying velocity field.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

template<class TScalar , unsigned int NDimensions>

virtual LightObject::Pointer itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::InternalClone ( ) const

protectedvirtual

Clone the current transform

Reimplemented from itk::Transform< TScalar, NDimensions, NDimensions >.

template<class TScalar , unsigned int NDimensions>

virtual bool itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::IsLinear ( ) const

inlinevirtual

This transform is not linear.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Definition at line 176 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

static Pointer itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::New ( )

static

New macro for creation of through a Smart Pointer

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

template<class TScalar , unsigned int NDimensions>

void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::operator= ( const Self & )

private

Create an identity jacobian for use in ComputeJacobianWithRespectToParameters.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

template<class TScalar , unsigned int NDimensions>

void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

template<class TScalar , unsigned int NDimensions>

virtual void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::SetDisplacementField ( DisplacementFieldType * _arg )

virtual

Set the deformation field. We want to override the base class implementation since we don't want to optimize over the deformation field for this class but rather the time-varying velocity field

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

template<class TScalar , unsigned int NDimensions>

virtual void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::SetFixedParameters ( const ParametersType & )

virtual

Set the fixed parameters and update internal transformation.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

template<class TScalar , unsigned int NDimensions>

virtual void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::SetFixedParametersFromTimeVaryingVelocityField ( )

protectedvirtual

Convenience method which reads the information from the current displacement field into m_FixedParameters.

template<class TScalar , unsigned int NDimensions>

virtual void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::SetLowerTimeBound ( ScalarType _arg )

virtual

Set the lower time bound defining the integration domain of the transform. We assume that the total possible time domain is [0,1]

template<class TScalar , unsigned int NDimensions>

virtual void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::SetNumberOfIntegrationSteps ( unsigned int _arg )

virtual

Set the number of integration steps used in the Runge-Kutta solution of the initial value problem. Default = 100;

template<class TScalar , unsigned int NDimensions>

virtual void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::SetParameters ( const ParametersType & )

virtual

Set the transformation parameters. This sets the time-varying velocity field image directly.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

template<class TScalar , unsigned int NDimensions>

virtual void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::SetTimeVaryingVelocityField ( TimeVaryingVelocityFieldType * )

virtual

Set the time-varying field.

template<class TScalar , unsigned int NDimensions>

virtual void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::SetTimeVaryingVelocityFieldInterpolator ( TimeVaryingVelocityFieldInterpolatorType * _arg )

virtual

Set the interpolator for the time-varying velocity field.

template<class TScalar , unsigned int NDimensions>

virtual void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::SetUpperTimeBound ( ScalarType _arg )

virtual

Set the upper time bound defining the integration domain of the transform. We assume that the total possible time domain is [0,1]

template<class TScalar , unsigned int NDimensions>

virtual void itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::UpdateTransformParameters	(	const DerivativeType &	,
		ScalarType	factor = `1.0`
	)

virtual

Get the Fixed Parameters.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

Member Data Documentation

template<class TScalar , unsigned int NDimensions>

const unsigned int itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::Dimension = NDimensions

static

Dimension of the domain spaces.

Reimplemented from itk::DisplacementFieldTransform< TScalar, NDimensions >.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 100 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

ScalarType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::m_LowerTimeBound

protected

Definition at line 231 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

unsigned int itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::m_NumberOfIntegrationSteps

protected

Definition at line 248 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

TimeVaryingVelocityFieldType::Pointer itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::m_TimeVaryingVelocityField

protected

The deformation field and its inverse (if it exists).

Definition at line 246 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

TimeVaryingVelocityFieldInterpolatorPointer itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::m_TimeVaryingVelocityFieldInterpolator

protected

Definition at line 247 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

ScalarType itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::m_UpperTimeBound

protected

Definition at line 232 of file itkTimeVaryingVelocityFieldTransform.h.

template<class TScalar , unsigned int NDimensions>

const unsigned int itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >::TimeVaryingVelocityFieldDimension = NDimensions+1

static

Dimension of the time varying velocity field.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldTransform< TScalar, NDimensions >, and itk::GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 103 of file itkTimeVaryingVelocityFieldTransform.h.

The documentation for this class was generated from the following file:

itkTimeVaryingVelocityFieldTransform.h

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Private Member Functions

Detailed Description

template<class TScalar, unsigned int NDimensions> class itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<class TScalar, unsigned int NDimensions>
class itk::TimeVaryingVelocityFieldTransform< TScalar, NDimensions >