#include <itkVoronoiSegmentationRGBImageFilter.h>

Inheritance diagram for itk::VoronoiSegmentationRGBImageFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::VoronoiSegmentationRGBImageFilter< TInputImage, TOutputImage >:

Public Types
typedef Superclass::BinaryObjectImage	BinaryObjectImage
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::IndexList	IndexList
typedef Superclass::IndexType	IndexType
typedef Superclass::InputImagePointer	InputImagePointer
typedef Superclass::InputImageType	InputImageType
typedef Superclass::PixelType	PixelType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RegionType	RegionType
typedef Image< RGBHCVPixel >	RGBHCVImage
typedef Vector< float, 6 >	RGBHCVPixel
typedef VoronoiSegmentationRGBImageFilter	Self
typedef VoronoiSegmentationImageFilterBase < TInputImage, TOutputImage >	Superclass
Public Types inherited from itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >
typedef BinaryObjectImage::Pointer	BinaryObjectImagePointer
typedef VoronoiDiagram::CellAutoPointer	CellAutoPointer
typedef VoronoiDiagram::CellType	CellType
typedef VoronoiDiagram::VoronoiEdge	EdgeInfo
typedef VoronoiDiagram::VoronoiEdgeIterator	EdgeIterator
typedef TInputImage::ConstPointer	InputImageConstPointer
typedef VoronoiDiagram::NeighborIdIterator	NeighborIdIterator
typedef TOutputImage	OutputImageType
typedef TOutputImage::PixelType	OutputPixelType
typedef CellType::PointIdIterator	PointIdIterator
typedef VoronoiDiagram::PointType	PointType
typedef std::deque< PointType >	PointTypeDeque
typedef std::vector< PointType >	PointTypeVector
typedef VoronoiDiagram::SeedsIterator	SeedsIterator
typedef VoronoiDiagram::SeedsType	SeedsType
typedef TInputImage::SizeType	SizeType
typedef Image< unsigned char, 2 >	VDImage
typedef VDImage::Pointer	VDImagePointer
typedef VoronoiDiagram2D< double >	VoronoiDiagram
typedef VoronoiDiagram2DGenerator < double >	VoronoiDiagramGenerator
typedef VoronoiDiagram::Pointer	VoronoiPointer
Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::RegionType	InputImageRegionType
typedef Superclass::OutputImagePixelType	OutputImagePixelType
typedef Superclass::OutputImageRegionType	OutputImageRegionType
Public Types inherited from itk::ImageSource< TOutputImage >
typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
typedef OutputImageType::Pointer	OutputImagePointer
Public Types inherited from itk::ProcessObject
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef std::vector < DataObjectIdentifierType >	NameArray
Public Types inherited from itk::Object
Public Types inherited from itk::LightObject

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const char *	GetNameOfClass () const
void	GetTestMean (unsigned int x[3])
void	GetTestSTD (unsigned int x[3])
virtual void	SetInput (const InputImageType *input)
virtual void	SetInput (unsigned int, const InputImageType *image)
void	SetTestMean (unsigned int t1, unsigned int t2, unsigned int t3)
void	SetTestSTD (unsigned int t1, unsigned int t2, unsigned int t3)
void	TakeAPrior (const BinaryObjectImage *aprior)
	typedef (Concept::SameDimension< InputImageDimension, OutputImageDimension >) SameDimensionCheck
	typedef (Concept::Convertible< int, typename TOutputImage::PixelType >) IntConvertibleToOutputCheck

void	SetMeanPercentError (double x[6])
void	SetSTDPercentError (double x[6])
void	GetMeanPercentError (double x[6])
void	GetSTDPercentError (double x[6])
void	GetMean (double x[6])
void	GetSTD (double x[6])
void	SetMean (double x[6])
void	SetSTD (double x[6])
void	GetMeanTolerance (double x[6])
void	GetSTDTolerance (double x[6])

virtual void	SetMaxValueOfRGB (double _arg)
virtual double	GetMaxValueOfRGB () const
Public Member Functions inherited from itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >
void	BeforeNextStep (void)
void	DrawDiagram (VDImagePointer result, unsigned char incolor, unsigned char outcolor, unsigned char boundcolor)
virtual void	EnlargeOutputRequestedRegion (DataObject *output)
virtual void	GenerateInputRequestedRegion ()
virtual int	GetLastStepSeeds () const
virtual int	GetNumberOfSeedsToAdded () const
PointType	GetSeed (int SeedID)
VoronoiPointer	GetVoronoiDiagram (void)
virtual void	MakeSegmentBoundary (void)
virtual void	MakeSegmentObject (void)
void	RunSegment (void)
void	RunSegmentOneStep (void)
virtual void	TakeAPrior (const BinaryObjectImage *)
virtual void	SetNumberOfSeeds (int _arg)
virtual int	GetNumberOfSeeds () const
virtual void	SetMinRegion (int _arg)
virtual int	GetMinRegion () const
virtual void	SetSteps (int _arg)
virtual int	GetSteps () const
virtual void	SetUseBackgroundInAPrior (bool _arg)
virtual bool	GetUseBackgroundInAPrior () const
virtual void	SetOutputBoundary (bool _arg)
virtual bool	GetOutputBoundary () const
virtual void	SetInteractiveSegmentation (bool _arg)
virtual bool	GetInteractiveSegmentation () const
virtual void	InteractiveSegmentationOn ()
virtual void	InteractiveSegmentationOff ()
virtual void	SetMeanDeviation (double _arg)
virtual double	GetMeanDeviation () const
virtual void	SetSize (SizeType _arg)
virtual SizeType	GetSize () const
void	SetSeeds (int num, SeedsIterator begin)
void	SetSeeds (SeedsType &seeds)
Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageType *	GetInput (void) const
const InputImageType *	GetInput (unsigned int idx) const
virtual void	PopBackInput ()
virtual void	PopFrontInput ()
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
virtual void	GraftOutput (DataObject *output)
virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageType *	GetOutput (void)
const OutputImageType *	GetOutput (void) const
virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual const bool &	GetAbortGenerateData ()
NameArray	GetInputNames () const
MultiThreader *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
virtual const float &	GetProgress ()
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	SetProgress (float _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float amount)
DataObjectPointerArray	GetInputs ()
DataObjectPointerArray	GetOutputs ()
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag ()
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads ()
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual unsigned long	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Attributes

static const unsigned int	InputImageDimension = TInputImage::ImageDimension
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension
Static Public Attributes inherited from itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >
static const unsigned int	ImageDimension
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
Static Public Attributes inherited from itk::ImageSource< TOutputImage >

Protected Member Functions

	VoronoiSegmentationRGBImageFilter ()
	~VoronoiSegmentationRGBImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
Protected Member Functions inherited from itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >
virtual void	ClassifyDiagram (void)
void	drawLine (PointType p1, PointType p2)
void	drawVDline (VDImagePointer result, PointType p1, PointType p2, unsigned char color)
void	FillPolygon (PointTypeDeque vertlist, OutputPixelType color=1)
virtual void	GenerateAddingSeeds (void)
void	GenerateData (void)
void	GetPixelIndexFromPolygon (PointTypeDeque VertList, IndexList *PixelPool)
virtual bool	TestHomogeneity (IndexList &)
	VoronoiSegmentationImageFilterBase ()
	~VoronoiSegmentationImageFilterBase ()
Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
	ImageToImageFilter ()
virtual void	VerifyInputInformation ()
	~ImageToImageFilter ()
void	PushBackInput (const DataObject *input)
void	PushFrontInput (const DataObject *input)
Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()
virtual void	AllocateOutputs ()
virtual void	BeforeThreadedGenerateData ()
	ImageSource ()
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual	~ImageSource ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs ()
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs ()
bool	IsIndexedName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromName (const DataObjectIdentifierType &) const
DataObjectIdentifierType	MakeNameFromIndex (DataObjectPointerArraySizeType) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyPreconditions ()
	~ProcessObject ()
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
DataObject *	GetInput (DataObjectPointerArraySizeType)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Member Functions
void	operator= (const Self &)
virtual bool	TestHomogeneity (IndexList &Plist)
	VoronoiSegmentationRGBImageFilter (const Self &)

Private Attributes
double	m_MaxValueOfRGB
double	m_Mean [6]
double	m_MeanPercentError [6]
double	m_MeanTolerance [6]
double	m_STD [6]
double	m_STDPercentError [6]
double	m_STDTolerance [6]
unsigned int	m_TestMean [3]
unsigned int	m_TestSTD [3]
RGBHCVImage::Pointer	m_WorkingImage

Additional Inherited Members
Protected Attributes inherited from itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >
bool	m_InteractiveSegmentation
std::vector< unsigned char >	m_Label
int	m_LastStepSeeds
double	m_MeanDeviation
int	m_MinRegion
int	m_NumberOfBoundary
std::vector< int >	m_NumberOfPixels
int	m_NumberOfSeeds
int	m_NumberOfSeedsToAdded
bool	m_OutputBoundary
std::vector< PointType >	m_SeedsToAdded
SizeType	m_Size
int	m_Steps
bool	m_UseBackgroundInAPrior
VoronoiDiagramGenerator::Pointer	m_VDGenerator
VoronoiDiagram::Pointer	m_WorkingVD

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::VoronoiSegmentationRGBImageFilter< TInputImage, TOutputImage >

Segmentation of 2D RGB images using Voronoi Diagram. This is not a standard 3 channel image filter, it also investigates the HSV color space information. from RGBHSV, the user can specify or by giving a prior binary mask, the algorithm will decide which 3 channels out of the 6 channels will be used for homogeneity testing. the homogeneity testing requires all the three testing channels to have the similar mean and standard deviation value from the gold-standard in the sense that the difference will be under the tolerance value.

Input parameters are: (1) Image data, in the format: itkImage<itkVector<PixelType,3>, 2>. (2) Object statistics: mean and standard deviation (3) Tolerance level for the classifier. This level is usually set around the mean and standard deviation values.

These parameters can also be automatically set by providing a binary image prior.

Detailed information about this algorithm can be found in: " Semi-automated color segmentation of anatomical tissue," C. Imelinska, M. Downes, and W. Yuan Computerized Medical Imaging and Graphics, Vol.24, pp 173-180, 2000.

Definition at line 54 of file itkVoronoiSegmentationRGBImageFilter.h.