itkMattesMutualInformationImageToImageMetricv4.h

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 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
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 *         http://www.apache.org/licenses/LICENSE-2.0.txt
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 *  distributed under the License is distributed on an "AS IS" BASIS,
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 *  See the License for the specific language governing permissions and
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#ifndef __itkMattesMutualInformationImageToImageMetricv4_h
#define __itkMattesMutualInformationImageToImageMetricv4_h

#include "itkImageToImageMetricv4.h"
#include "itkMattesMutualInformationImageToImageMetricv4GetValueAndDerivativeThreader.h"
#include "itkPoint.h"
#include "itkIndex.h"
#include "itkBSplineDerivativeKernelFunction.h"
#include "itkArray2D.h"

namespace itk
{

template <class TFixedImage, class TMovingImage, class TVirtualImage = TFixedImage >
class ITK_EXPORT MattesMutualInformationImageToImageMetricv4 :
public ImageToImageMetricv4<TFixedImage, TMovingImage, TVirtualImage>
{
public:
  typedef MattesMutualInformationImageToImageMetricv4                    Self;
  typedef ImageToImageMetricv4<TFixedImage, TMovingImage, TVirtualImage> Superclass;
  typedef SmartPointer<Self>                                             Pointer;
  typedef SmartPointer<const Self>                                       ConstPointer;

  itkNewMacro(Self);

  itkTypeMacro(MattesMutualInformationImageToImageMetricv4, ImageToImageMetricv4);

  typedef typename Superclass::MeasureType             MeasureType;
  typedef typename Superclass::DerivativeType          DerivativeType;
  typedef typename DerivativeType::ValueType           DerivativeValueType;

  typedef typename Superclass::FixedImageType          FixedImageType;
  typedef typename Superclass::FixedImagePointType     FixedImagePointType;
  typedef typename Superclass::FixedImageIndexType     FixedImageIndexType;
  typedef typename Superclass::FixedImagePixelType     FixedImagePixelType;
  typedef typename Superclass::FixedImageGradientType  FixedImageGradientType;

  typedef typename Superclass::MovingImagePointType    MovingImagePointType;
  typedef typename Superclass::MovingImagePixelType    MovingImagePixelType;
  typedef typename Superclass::MovingImageGradientType MovingImageGradientType;

  typedef typename Superclass::MovingTransformType     MovingTransformType;
  typedef typename Superclass::JacobianType            JacobianType;
  typedef typename Superclass::VirtualImageType        VirtualImageType;
  typedef typename Superclass::VirtualIndexType        VirtualIndexType;
  typedef typename Superclass::VirtualPointType        VirtualPointType;
  typedef typename Superclass::VirtualPointSetType     VirtualPointSetType;

  typedef typename Superclass::FixedSampledPointSetPointer    FixedSampledPointSetPointer;

  /* Image dimension accessors */
  itkStaticConstMacro(VirtualImageDimension, ImageDimensionType, ::itk::GetImageDimension<TVirtualImage>::ImageDimension);
  itkStaticConstMacro(FixedImageDimension, ImageDimensionType,  ::itk::GetImageDimension<TFixedImage>::ImageDimension);
  itkStaticConstMacro(MovingImageDimension, ImageDimensionType, ::itk::GetImageDimension<TMovingImage>::ImageDimension);

  itkSetClampMacro( NumberOfHistogramBins, SizeValueType, 5, NumericTraits<SizeValueType>::max() );
  itkGetConstReferenceMacro(NumberOfHistogramBins, SizeValueType);

  virtual void Initialize(void) throw ( itk::ExceptionObject );

  virtual MeasureType GetValue() const;

  virtual void GetValueAndDerivative( MeasureType & value, DerivativeType & derivative ) const;

  //NOTE:  floating point precision is not as stable.
  // Double precision proves faster and more robust in real-world testing.
  typedef double PDFValueType;

  typedef Image<PDFValueType, 2> JointPDFType;
  typedef Image<PDFValueType, 3> JointPDFDerivativesType;

  const typename JointPDFType::Pointer GetJointPDF () const
    {
    if( this->m_ThreaderJointPDF.size() == 0 )
      {
      return JointPDFType::Pointer(NULL);
      }
    return this->m_ThreaderJointPDF[0];
    }

  const typename JointPDFDerivativesType::Pointer GetJointPDFDerivatives () const
    {
    if( this->m_ThreaderJointPDFDerivatives.size() == 0 )
      {
      return JointPDFDerivativesType::Pointer(NULL);
      }
    return this->m_ThreaderJointPDFDerivatives[0];
    }


protected:
  MattesMutualInformationImageToImageMetricv4();
  virtual ~MattesMutualInformationImageToImageMetricv4();

  friend class MattesMutualInformationImageToImageMetricv4GetValueAndDerivativeThreader< ThreadedImageRegionPartitioner< Superclass::VirtualImageDimension >, Superclass, Self >;
  friend class MattesMutualInformationImageToImageMetricv4GetValueAndDerivativeThreader< ThreadedIndexedContainerPartitioner, Superclass, Self >;
  typedef MattesMutualInformationImageToImageMetricv4GetValueAndDerivativeThreader< ThreadedImageRegionPartitioner< Superclass::VirtualImageDimension >, Superclass, Self >
    MattesMutualInformationDenseGetValueAndDerivativeThreaderType;
  typedef MattesMutualInformationImageToImageMetricv4GetValueAndDerivativeThreader< ThreadedIndexedContainerPartitioner, Superclass, Self >
    MattesMutualInformationSparseGetValueAndDerivativeThreaderType;

  void PrintSelf(std::ostream& os, Indent indent) const;

  typedef JointPDFType::IndexType             JointPDFIndexType;
  typedef JointPDFType::PixelType             JointPDFValueType;
  typedef JointPDFType::RegionType            JointPDFRegionType;
  typedef JointPDFType::SizeType              JointPDFSizeType;
  typedef JointPDFDerivativesType::IndexType  JointPDFDerivativesIndexType;
  typedef JointPDFDerivativesType::PixelType  JointPDFDerivativesValueType;
  typedef JointPDFDerivativesType::RegionType JointPDFDerivativesRegionType;
  typedef JointPDFDerivativesType::SizeType   JointPDFDerivativesSizeType;

  typedef BSplineKernelFunction<3,PDFValueType>           CubicBSplineFunctionType;
  typedef BSplineDerivativeKernelFunction<3,PDFValueType> CubicBSplineDerivativeFunctionType;

  virtual void GetValueCommonAfterThreadedExecution();

  OffsetValueType ComputeSingleFixedImageParzenWindowIndex( const FixedImagePixelType & value ) const;

  SizeValueType m_NumberOfHistogramBins;
  PDFValueType  m_MovingImageNormalizedMin;
  PDFValueType  m_FixedImageNormalizedMin;
  PDFValueType  m_FixedImageTrueMin;
  PDFValueType  m_FixedImageTrueMax;
  PDFValueType  m_MovingImageTrueMin;
  PDFValueType  m_MovingImageTrueMax;
  PDFValueType  m_FixedImageBinSize;
  PDFValueType  m_MovingImageBinSize;

  typename CubicBSplineFunctionType::Pointer           m_CubicBSplineKernel;
  typename CubicBSplineDerivativeFunctionType::Pointer m_CubicBSplineDerivativeKernel;

  typedef PDFValueType              PRatioType;
  typedef std::vector<PRatioType>   PRatioArrayType;

  mutable PRatioArrayType           m_PRatioArray;

  mutable std::vector<OffsetValueType>   m_JointPdfIndex1DArray;

  mutable std::vector<PDFValueType>               m_MovingImageMarginalPDF;
  mutable std::vector<std::vector<PDFValueType> > m_ThreaderFixedImageMarginalPDF;

  typename std::vector<JointPDFType::Pointer>            m_ThreaderJointPDF;
  typename std::vector<JointPDFDerivativesType::Pointer> m_ThreaderJointPDFDerivatives;

  std::vector<int> m_ThreaderJointPDFStartBin;
  std::vector<int> m_ThreaderJointPDFEndBin;

  mutable std::vector<PDFValueType> m_ThreaderJointPDFSum;

  mutable std::vector<DerivativeType>              m_LocalDerivativeByParzenBin;

private:
  MattesMutualInformationImageToImageMetricv4(const Self &); //purposely not implemented
  void operator = (const Self &); //purposely not implemented

  virtual void ComputeResults( void ) const;

  mutable bool m_ComputeDerivative;

};

} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkMattesMutualInformationImageToImageMetricv4.hxx"
#endif

#endif