ImageIO class for reading LSM (Zeiss) images LSM is a line of confocal laser scanning microscopes produced by the Zeiss company LSM files are essentially extensions of the TIFF multiple image stack file format.
Definition at line 46 of file itkLSMImageIO.h.
|
virtual bool | CanReadFile (const char *) |
|
virtual bool | CanWriteFile (const char *) |
|
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
|
virtual const char * | GetNameOfClass () const |
|
virtual void | Read (void *buffer) |
|
virtual void | ReadImageInformation () |
|
virtual void | Write (const void *buffer) |
|
virtual void | WriteImageInformation () |
|
virtual void | ReadTiles (void *buffer) |
|
virtual void | ReadVolume (void *buffer) |
|
void | SetCompression (int compression) |
|
void | SetCompressionToDeflate () |
|
void | SetCompressionToJPEG () |
|
void | SetCompressionToLZW () |
|
void | SetCompressionToNoCompression () |
|
void | SetCompressionToPackBits () |
|
virtual bool | CanStreamRead () |
|
virtual bool | CanStreamWrite () |
|
virtual ImageIORegion | GenerateStreamableReadRegionFromRequestedRegion (const ImageIORegion &requested) const |
|
virtual unsigned int | GetActualNumberOfSplitsForWriting (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion) |
|
std::string | GetByteOrderAsString (ByteOrder) const |
|
virtual unsigned int | GetComponentSize () const |
|
virtual IOComponentType | GetComponentType () const |
|
virtual const std::type_info & | GetComponentTypeInfo () const |
|
virtual std::vector< double > | GetDefaultDirection (unsigned int i) const |
|
virtual unsigned int | GetDimensions (unsigned int i) const |
|
virtual std::vector< double > | GetDirection (unsigned int i) const |
|
std::string | GetFileTypeAsString (FileType) const |
|
SizeType | GetImageSizeInBytes () const |
|
SizeType | GetImageSizeInComponents () const |
|
SizeType | GetImageSizeInPixels () const |
|
virtual unsigned int | GetNumberOfDimensions () const |
|
virtual double | GetOrigin (unsigned int i) const |
|
virtual SizeType | GetPixelStride () const |
|
virtual double | GetSpacing (unsigned int i) const |
|
virtual ImageIORegion | GetSplitRegionForWriting (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion) |
|
const ArrayOfExtensionsType & | GetSupportedReadExtensions () const |
|
const ArrayOfExtensionsType & | GetSupportedWriteExtensions () const |
|
void | SetByteOrderToLittleEndian () |
|
virtual void | SetComponentType (const IOComponentType _arg) |
|
virtual void | SetDirection (unsigned int i, std::vector< double > &direction) |
|
virtual void | SetDirection (unsigned int i, vnl_vector< double > &direction) |
|
void | SetFileTypeToBinary () |
|
void | SetNumberOfDimensions (unsigned int) |
|
virtual void | SetOrigin (unsigned int i, double origin) |
|
template<class TPixel , unsigned VLength> |
void | SetPixelTypeInfo (const SymmetricSecondRankTensor< TPixel, VLength > *) |
|
template<typename TPixel > |
void | SetPixelTypeInfo (const DiffusionTensor3D< TPixel > *) |
|
template<typename TPixel , unsigned VLength> |
void | SetPixelTypeInfo (const Matrix< TPixel, VLength, VLength > *) |
|
template<typename TPixel > |
void | SetPixelTypeInfo (const std::complex< TPixel > *) |
|
template<unsigned VLength> |
void | SetPixelTypeInfo (const Offset< VLength > *) |
|
virtual void | SetSpacing (unsigned int i, double spacing) |
|
template<typename TPixel > |
void | SetTypeInfo (const TPixel *) |
|
virtual bool | SupportsDimension (unsigned long dim) |
|
virtual void | SetFileName (const char *_arg) |
|
virtual const char * | GetFileName () const |
|
virtual void | SetDimensions (unsigned int i, unsigned int dim) |
|
virtual void | SetIORegion (ImageIORegion _arg) |
|
virtual const ImageIORegion & | GetIORegion () |
|
virtual void | SetPixelType (const IOPixelType _arg) |
|
virtual IOPixelType | GetPixelType () const |
|
virtual void | SetNumberOfComponents (unsigned int _arg) |
|
virtual const unsigned int & | GetNumberOfComponents () |
|
virtual void | SetUseCompression (bool _arg) |
|
virtual bool | GetUseCompression () const |
|
virtual void | UseCompressionOn () |
|
virtual void | UseCompressionOff () |
|
virtual void | SetUseStreamedReading (bool _arg) |
|
virtual bool | GetUseStreamedReading () const |
|
virtual void | UseStreamedReadingOn () |
|
virtual void | UseStreamedReadingOff () |
|
virtual void | SetUseStreamedWriting (bool _arg) |
|
virtual bool | GetUseStreamedWriting () const |
|
virtual void | UseStreamedWritingOn () |
|
virtual void | UseStreamedWritingOff () |
|
virtual void | SetFileType (const FileType _arg) |
|
virtual FileType | GetFileType () const |
|
void | SetFileTypeToASCII () |
|
virtual void | SetByteOrder (const ByteOrder _arg) |
|
virtual ByteOrder | GetByteOrder () const |
|
void | SetByteOrderToBigEndian () |
|
template<typename TPixel > |
void | SetPixelTypeInfo (const TPixel *) |
|
template<typename TPixel > |
void | SetPixelTypeInfo (const RGBPixel< TPixel > *) |
|
template<typename TPixel > |
void | SetPixelTypeInfo (const RGBAPixel< TPixel > *) |
|
template<typename TPixel , unsigned VLength> |
void | SetPixelTypeInfo (const Vector< TPixel, VLength > *) |
|
template<typename TPixel > |
void | SetPixelTypeInfo (const VariableLengthVector< TPixel > *) |
|
template<typename TPixel , unsigned VLength> |
void | SetPixelTypeInfo (const CovariantVector< TPixel, VLength > *) |
|
template<typename TPixel , unsigned VLength> |
void | SetPixelTypeInfo (const FixedArray< TPixel, VLength > *) |
|
virtual void | AbortGenerateDataOff () |
|
virtual void | AbortGenerateDataOn () |
|
virtual const bool & | GetAbortGenerateData () |
|
virtual void | SetAbortGenerateData (bool _arg) |
|
virtual void | UpdateOutputData () |
|
void | UpdateProgress (float amount) |
|
virtual void | SetProgress (float _arg) |
|
virtual const float & | GetProgress () |
|
unsigned long | AddObserver (const EventObject &event, Command *) |
|
unsigned long | AddObserver (const EventObject &event, Command *) const |
|
virtual void | DebugOff () const |
|
virtual void | DebugOn () const |
|
Command * | GetCommand (unsigned long tag) |
|
bool | GetDebug () const |
|
MetaDataDictionary & | GetMetaDataDictionary (void) |
|
const MetaDataDictionary & | GetMetaDataDictionary (void) const |
|
virtual ModifiedTimeType | GetMTime () const |
|
virtual const TimeStamp & | GetTimeStamp () const |
|
bool | HasObserver (const EventObject &event) const |
|
void | InvokeEvent (const EventObject &) |
|
void | InvokeEvent (const EventObject &) const |
|
virtual void | Modified () const |
|
virtual void | Register () const |
|
void | RemoveAllObservers () |
|
void | RemoveObserver (unsigned long tag) |
|
void | SetDebug (bool debugFlag) const |
|
void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
|
virtual void | SetReferenceCount (int) |
|
virtual void | UnRegister () const |
|
virtual void | Delete () |
|
virtual int | GetReferenceCount () const |
|
| itkCloneMacro (Self) |
|
void | Print (std::ostream &os, Indent indent=0) const |
|
|
| LSMImageIO () |
|
void | PrintSelf (std::ostream &os, Indent indent) const |
|
| ~LSMImageIO () |
|
bool | CanFindTIFFTag (unsigned int t) |
|
int | EvaluateImageAt (void *out, void *in) |
|
void | GetColor (int index, unsigned short *red, unsigned short *green, unsigned short *blue) |
|
unsigned int | GetFormat () |
|
void | InitializeColors () |
|
void | InternalWrite (const void *buffer) |
|
void | ReadGenericImage (void *out, unsigned int, unsigned int height) |
|
void * | ReadRawByteFromTag (unsigned int t, short &value_count) |
|
void | ReadTwoSamplesPerPixelImage (void *out, unsigned int, unsigned int height) |
|
| TIFFImageIO () |
|
| ~TIFFImageIO () |
|
void | AddSupportedReadExtension (const char *extension) |
|
void | AddSupportedWriteExtension (const char *extension) |
|
void | ComputeStrides () |
|
virtual unsigned int | GetActualNumberOfSplitsForWritingCanStreamWrite (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion) const |
|
SizeType | GetComponentStride () const |
|
virtual unsigned int | GetPixelSize () const |
|
SizeType | GetRowStride () const |
|
SizeType | GetSliceStride () const |
|
virtual ImageIORegion | GetSplitRegionForWritingCanStreamWrite (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion) const |
|
| ImageIOBase () |
|
virtual void | ReadBufferAsASCII (std::istream &os, void *buffer, IOComponentType ctype, SizeType numberOfBytesToBeRead) |
|
bool | ReadBufferAsBinary (std::istream &os, void *buffer, SizeType numberOfBytesToBeRead) |
|
virtual void | Reset (const bool freeDynamic=true) |
|
void | Resize (const unsigned int numDimensions, const unsigned int *dimensions) |
|
virtual void | WriteBufferAsASCII (std::ostream &os, const void *buffer, IOComponentType ctype, SizeType numberOfBytesToWrite) |
|
| ~ImageIOBase () |
|
virtual void | GenerateData () |
|
| LightProcessObject () |
|
| ~LightProcessObject () |
|
| Object () |
|
bool | PrintObservers (std::ostream &os, Indent indent) const |
|
virtual void | SetTimeStamp (const TimeStamp &time) |
|
virtual | ~Object () |
|
virtual LightObject::Pointer | InternalClone () const |
|
| LightObject () |
|
virtual void | PrintHeader (std::ostream &os, Indent indent) const |
|
virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
|
virtual | ~LightObject () |
|