ITK
4.3.0
Insight Segmentation and Registration Toolkit
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#include <itkLSMImageIO.h>
ImageIO class for reading LSM (Zeiss) images LSM is a line of confocal laser scanning microscopes produced by the Zeiss company LSM files are essentially extensions of the TIFF multiple image stack file format.
Definition at line 46 of file itkLSMImageIO.h.
Public Member Functions | |
virtual bool | CanReadFile (const char *) |
virtual bool | CanWriteFile (const char *) |
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
virtual const char * | GetNameOfClass () const |
virtual void | Read (void *buffer) |
virtual void | ReadImageInformation () |
virtual void | Write (const void *buffer) |
virtual void | WriteImageInformation () |
Public Member Functions inherited from itk::TIFFImageIO | |
virtual void | ReadTiles (void *buffer) |
virtual void | ReadVolume (void *buffer) |
void | SetCompression (int compression) |
void | SetCompressionToDeflate () |
void | SetCompressionToJPEG () |
void | SetCompressionToLZW () |
void | SetCompressionToNoCompression () |
void | SetCompressionToPackBits () |
Public Member Functions inherited from itk::ImageIOBase | |
virtual bool | CanStreamRead () |
virtual bool | CanStreamWrite () |
virtual ImageIORegion | GenerateStreamableReadRegionFromRequestedRegion (const ImageIORegion &requested) const |
virtual unsigned int | GetActualNumberOfSplitsForWriting (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion) |
std::string | GetByteOrderAsString (ByteOrder) const |
virtual unsigned int | GetComponentSize () const |
virtual IOComponentType | GetComponentType () const |
virtual const std::type_info & | GetComponentTypeInfo () const |
virtual std::vector< double > | GetDefaultDirection (unsigned int i) const |
virtual unsigned int | GetDimensions (unsigned int i) const |
virtual std::vector< double > | GetDirection (unsigned int i) const |
std::string | GetFileTypeAsString (FileType) const |
SizeType | GetImageSizeInBytes () const |
SizeType | GetImageSizeInComponents () const |
SizeType | GetImageSizeInPixels () const |
virtual unsigned int | GetNumberOfDimensions () const |
virtual double | GetOrigin (unsigned int i) const |
virtual SizeType | GetPixelStride () const |
virtual double | GetSpacing (unsigned int i) const |
virtual ImageIORegion | GetSplitRegionForWriting (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion) |
const ArrayOfExtensionsType & | GetSupportedReadExtensions () const |
const ArrayOfExtensionsType & | GetSupportedWriteExtensions () const |
void | SetByteOrderToLittleEndian () |
virtual void | SetComponentType (const IOComponentType _arg) |
virtual void | SetDirection (unsigned int i, std::vector< double > &direction) |
virtual void | SetDirection (unsigned int i, vnl_vector< double > &direction) |
void | SetFileTypeToBinary () |
void | SetNumberOfDimensions (unsigned int) |
virtual void | SetOrigin (unsigned int i, double origin) |
template<class TPixel , unsigned VLength> | |
void | SetPixelTypeInfo (const SymmetricSecondRankTensor< TPixel, VLength > *) |
template<typename TPixel > | |
void | SetPixelTypeInfo (const DiffusionTensor3D< TPixel > *) |
template<typename TPixel , unsigned VLength> | |
void | SetPixelTypeInfo (const Matrix< TPixel, VLength, VLength > *) |
template<typename TPixel > | |
void | SetPixelTypeInfo (const std::complex< TPixel > *) |
template<unsigned VLength> | |
void | SetPixelTypeInfo (const Offset< VLength > *) |
virtual void | SetSpacing (unsigned int i, double spacing) |
template<typename TPixel > | |
void | SetTypeInfo (const TPixel *) |
virtual bool | SupportsDimension (unsigned long dim) |
virtual void | SetFileName (const char *_arg) |
virtual const char * | GetFileName () const |
virtual void | SetDimensions (unsigned int i, unsigned int dim) |
virtual void | SetIORegion (ImageIORegion _arg) |
virtual const ImageIORegion & | GetIORegion () |
virtual void | SetPixelType (const IOPixelType _arg) |
virtual IOPixelType | GetPixelType () const |
virtual void | SetNumberOfComponents (unsigned int _arg) |
virtual const unsigned int & | GetNumberOfComponents () |
virtual void | SetUseCompression (bool _arg) |
virtual bool | GetUseCompression () const |
virtual void | UseCompressionOn () |
virtual void | UseCompressionOff () |
virtual void | SetUseStreamedReading (bool _arg) |
virtual bool | GetUseStreamedReading () const |
virtual void | UseStreamedReadingOn () |
virtual void | UseStreamedReadingOff () |
virtual void | SetUseStreamedWriting (bool _arg) |
virtual bool | GetUseStreamedWriting () const |
virtual void | UseStreamedWritingOn () |
virtual void | UseStreamedWritingOff () |
virtual void | SetFileType (const FileType _arg) |
virtual FileType | GetFileType () const |
void | SetFileTypeToASCII () |
virtual void | SetByteOrder (const ByteOrder _arg) |
virtual ByteOrder | GetByteOrder () const |
void | SetByteOrderToBigEndian () |
template<typename TPixel > | |
void | SetPixelTypeInfo (const TPixel *) |
template<typename TPixel > | |
void | SetPixelTypeInfo (const RGBPixel< TPixel > *) |
template<typename TPixel > | |
void | SetPixelTypeInfo (const RGBAPixel< TPixel > *) |
template<typename TPixel , unsigned VLength> | |
void | SetPixelTypeInfo (const Vector< TPixel, VLength > *) |
template<typename TPixel > | |
void | SetPixelTypeInfo (const VariableLengthVector< TPixel > *) |
template<typename TPixel , unsigned VLength> | |
void | SetPixelTypeInfo (const CovariantVector< TPixel, VLength > *) |
template<typename TPixel , unsigned VLength> | |
void | SetPixelTypeInfo (const FixedArray< TPixel, VLength > *) |
Public Member Functions inherited from itk::LightProcessObject | |
virtual void | AbortGenerateDataOff () |
virtual void | AbortGenerateDataOn () |
virtual const bool & | GetAbortGenerateData () |
virtual void | SetAbortGenerateData (bool _arg) |
virtual void | UpdateOutputData () |
void | UpdateProgress (float amount) |
virtual void | SetProgress (float _arg) |
virtual const float & | GetProgress () |
Public Member Functions inherited from itk::Object | |
unsigned long | AddObserver (const EventObject &event, Command *) |
unsigned long | AddObserver (const EventObject &event, Command *) const |
virtual void | DebugOff () const |
virtual void | DebugOn () const |
Command * | GetCommand (unsigned long tag) |
bool | GetDebug () const |
MetaDataDictionary & | GetMetaDataDictionary (void) |
const MetaDataDictionary & | GetMetaDataDictionary (void) const |
virtual ModifiedTimeType | GetMTime () const |
virtual const TimeStamp & | GetTimeStamp () const |
bool | HasObserver (const EventObject &event) const |
void | InvokeEvent (const EventObject &) |
void | InvokeEvent (const EventObject &) const |
virtual void | Modified () const |
virtual void | Register () const |
void | RemoveAllObservers () |
void | RemoveObserver (unsigned long tag) |
void | SetDebug (bool debugFlag) const |
void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
virtual void | SetReferenceCount (int) |
virtual void | UnRegister () const |
Public Member Functions inherited from itk::LightObject | |
virtual void | Delete () |
virtual int | GetReferenceCount () const |
itkCloneMacro (Self) | |
void | Print (std::ostream &os, Indent indent=0) const |
Static Public Member Functions | |
static Pointer | New () |
Static Public Member Functions inherited from itk::TIFFImageIO | |
static Pointer | New () |
Static Public Member Functions inherited from itk::ImageIOBase | |
static std::string | GetComponentTypeAsString (IOComponentType) |
static IOComponentType | GetComponentTypeFromString (const std::string &typeString) |
static std::string | GetPixelTypeAsString (IOPixelType) |
static IOPixelType | GetPixelTypeFromString (const std::string &pixelString) |
Static Public Member Functions inherited from itk::LightProcessObject | |
static Pointer | New () |
Static Public Member Functions inherited from itk::Object | |
static bool | GetGlobalWarningDisplay () |
static void | GlobalWarningDisplayOff () |
static void | GlobalWarningDisplayOn () |
static Pointer | New () |
static void | SetGlobalWarningDisplay (bool flag) |
Static Public Member Functions inherited from itk::LightObject | |
static void | BreakOnError () |
static Pointer | New () |
Protected Member Functions | |
LSMImageIO () | |
void | PrintSelf (std::ostream &os, Indent indent) const |
~LSMImageIO () | |
Protected Member Functions inherited from itk::TIFFImageIO | |
bool | CanFindTIFFTag (unsigned int t) |
int | EvaluateImageAt (void *out, void *in) |
void | GetColor (int index, unsigned short *red, unsigned short *green, unsigned short *blue) |
unsigned int | GetFormat () |
void | InitializeColors () |
void | InternalWrite (const void *buffer) |
void | ReadGenericImage (void *out, unsigned int, unsigned int height) |
void * | ReadRawByteFromTag (unsigned int t, short &value_count) |
void | ReadTwoSamplesPerPixelImage (void *out, unsigned int, unsigned int height) |
TIFFImageIO () | |
~TIFFImageIO () | |
Protected Member Functions inherited from itk::ImageIOBase | |
void | AddSupportedReadExtension (const char *extension) |
void | AddSupportedWriteExtension (const char *extension) |
void | ComputeStrides () |
virtual unsigned int | GetActualNumberOfSplitsForWritingCanStreamWrite (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion) const |
SizeType | GetComponentStride () const |
virtual unsigned int | GetPixelSize () const |
SizeType | GetRowStride () const |
SizeType | GetSliceStride () const |
virtual ImageIORegion | GetSplitRegionForWritingCanStreamWrite (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion) const |
ImageIOBase () | |
virtual void | ReadBufferAsASCII (std::istream &os, void *buffer, IOComponentType ctype, SizeType numberOfBytesToBeRead) |
bool | ReadBufferAsBinary (std::istream &os, void *buffer, SizeType numberOfBytesToBeRead) |
virtual void | Reset (const bool freeDynamic=true) |
void | Resize (const unsigned int numDimensions, const unsigned int *dimensions) |
virtual void | WriteBufferAsASCII (std::ostream &os, const void *buffer, IOComponentType ctype, SizeType numberOfBytesToWrite) |
~ImageIOBase () | |
Protected Member Functions inherited from itk::LightProcessObject | |
virtual void | GenerateData () |
LightProcessObject () | |
~LightProcessObject () | |
Protected Member Functions inherited from itk::Object | |
Object () | |
bool | PrintObservers (std::ostream &os, Indent indent) const |
virtual void | SetTimeStamp (const TimeStamp &time) |
virtual | ~Object () |
Protected Member Functions inherited from itk::LightObject | |
virtual LightObject::Pointer | InternalClone () const |
LightObject () | |
virtual void | PrintHeader (std::ostream &os, Indent indent) const |
virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
virtual | ~LightObject () |
Private Member Functions | |
void | FillZeissStruct (char *z) |
LSMImageIO (const Self &) | |
void | operator= (const Self &) |
Additional Inherited Members | |
Protected Types inherited from itk::LightObject | |
typedef int | InternalReferenceCountType |
Protected Attributes inherited from itk::TIFFImageIO | |
int | m_Compression |
TIFFReaderInternal * | m_InternalImage |
typedef SmartPointer< Self > itk::LSMImageIO::Pointer |
Definition at line 52 of file itkLSMImageIO.h.
typedef LSMImageIO itk::LSMImageIO::Self |
Standard class typedefs.
Definition at line 50 of file itkLSMImageIO.h.
Definition at line 51 of file itkLSMImageIO.h.
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Determine the file type. Returns true if this ImageIO can read the file specified.
Reimplemented from itk::TIFFImageIO.
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Determine the file type. Returns true if this ImageIO can read the file specified.
Reimplemented from itk::TIFFImageIO.
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Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::TIFFImageIO.
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Run-time type information (and related methods).
Reimplemented from itk::TIFFImageIO.
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Method for creation through the object factory.
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Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::TIFFImageIO.
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Reads the data from disk into the memory buffer provided.
Reimplemented from itk::TIFFImageIO.
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Set the spacing and dimesion information for the current filename.
Reimplemented from itk::TIFFImageIO.
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Writes the data to disk from the memory buffer provided. Make sure that the IORegion has been set properly.
Reimplemented from itk::TIFFImageIO.
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Writes the spacing and dimensions of the image. Assumes SetFileName has been called with a valid file name.
Reimplemented from itk::TIFFImageIO.
Definition at line 80 of file itkLSMImageIO.h.