#include <itkPointSetToPointSetMetricv4.h>

Inheritance diagram for itk::PointSetToPointSetMetricv4< TFixedPointSet, TMovingPointSet >:

Collaboration diagram for itk::PointSetToPointSetMetricv4< TFixedPointSet, TMovingPointSet >:

Detailed Description

template<class TFixedPointSet, class TMovingPointSet>
class itk::PointSetToPointSetMetricv4< TFixedPointSet, TMovingPointSet >

Computes similarity between two point sets.

This class is templated over the type of the two point-sets. It expects a Transform to be plugged in for each of fixed and moving point sets. The transforms default to IdenityTransform types. This particular class is the base class for a hierarchy of point-set to point-set metrics.

This class computes a value that measures the similarity between the fixed point-set and the moving point-set in the moving domain. The fixed point set is transformed into the virtual domain by computing the inverse of the fixed transform, then transformed into the moving domain using the moving transform.

Since the PointSet class permits each Point to be associated with a PixelType, there are potential applications which could make use of this additional information. For example, the derived LabeledPointSetToPointSetMetric class uses the PixelType as a LabelType for estimating total metric values and gradients from the individual label-wise point subset metric and derivatives

If a virtual domain is not defined by the user, one of two things happens: 1) If the moving transform is a global type, then the virtual domain is left undefined and every point is considered to be within the virtual domain. 2) If the moving transform is a local-support type, then the virtual domain is taken during initialization from the moving transform displacement field, and all fixed points are verified to be within the virtual domain after transformation by the inverse fixed transform. Points outside the virtual domain are not used. See GetNumberOfValidPoints() to verify how many fixed points were used during evaluation.

See ObjectToObjectMetric documentation for more discussion on the virutal domain.

Note: When used with an RegistrationParameterScalesEstimator estimator, a VirtualDomainPointSet must be defined and assigned to the estimator, for use in shift estimation. The virtual domain point set can be retrieved from the metric using the GetVirtualTransformedPointSet() method.

Definition at line 70 of file itkPointSetToPointSetMetricv4.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef PointType::CoordRepType	CoordRepType

typedef Superclass::DerivativeType	DerivativeType

typedef DerivativeType::ValueType	DerivativeValueType

typedef Superclass::DimensionType	DimensionType

typedef Superclass::MovingDisplacementFieldTransformType	DisplacementFieldTransformType

typedef Superclass::FixedInputPointType	FixedInputPointType

typedef Superclass::FixedOutputPointType	FixedOutputPointType

typedef TFixedPointSet::PixelType	FixedPixelType

typedef TFixedPointSet::PointsContainer	FixedPointsContainer

typedef TFixedPointSet	FixedPointSetType

typedef TFixedPointSet::PointType	FixedPointType

typedef PointSet < FixedPixelType, itkGetStaticConstMacro(PointDimension)>	FixedTransformedPointSetType

typedef Superclass::FixedTransformJacobianType	FixedTransformJacobianType

typedef Superclass::FixedTransformParametersType	FixedTransformParametersType

typedef Superclass::FixedTransformPointer	FixedTransformPointer

typedef Superclass::FixedTransformType	FixedTransformType

typedef Superclass::JacobianType	JacobianType

typedef FixedArray < DerivativeValueType, itkGetStaticConstMacro(PointDimension)>	LocalDerivativeType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingInputPointType	MovingInputPointType

typedef Superclass::MovingOutputPointType	MovingOutputPointType

typedef TMovingPointSet::PixelType	MovingPixelType

typedef TMovingPointSet::PointsContainer	MovingPointsContainer

typedef TMovingPointSet	MovingPointSetType

typedef TMovingPointSet::PointType	MovingPointType

typedef PointSet < MovingPixelType, itkGetStaticConstMacro(PointDimension)>	MovingTransformedPointSetType

typedef Superclass::MovingTransformJacobianType	MovingTransformJacobianType

typedef Superclass::MovingTransformParametersType	MovingTransformParametersType

typedef Superclass::MovingTransformPointer	MovingTransformPointer

typedef Superclass::MovingTransformType	MovingTransformType

typedef PointsLocatorType::NeighborsIdentifierType	NeighborsIdentifierType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef FixedPixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef PointsContainer::ElementIdentifier	PointIdentifier

typedef PointsContainer::ConstIterator	PointsConstIterator

typedef FixedPointsContainer	PointsContainer

typedef PointsLocator < PointIdentifier, itkGetStaticConstMacro(PointDimension), CoordRepType, PointsContainer >	PointsLocatorType

typedef FixedPointType	PointType

typedef PointSetToPointSetMetricv4	Self

typedef ObjectToObjectMetric < TFixedPointSet::PointDimension, TMovingPointSet::PointDimension >	Superclass

typedef Superclass::VirtualDirectionType	VirtualDirectionType

typedef Superclass::VirtualImagePointer	VirtualImagePointer

typedef Superclass::VirtualImageType	VirtualImageType

typedef Superclass::VirtualIndexType	VirtualIndexType

typedef Superclass::VirtualPointType	VirtualOriginType

typedef Superclass::VirtualPixelType	VirtualPixelType

typedef Superclass::VirtualPointSetPointer	VirtualPointSetPointer

typedef Superclass::VirtualPointSetType	VirtualPointSetType

typedef Superclass::VirtualPointType	VirtualPointType

typedef Superclass::VirtualSizeType	VirtualRadiusType

typedef Superclass::VirtualRegionType	VirtualRegionType

typedef Superclass::VirtualSizeType	VirtualSizeType

typedef Superclass::VirtualSpacingType	VirtualSpacingType

Public Types inherited from itk::ObjectToObjectMetric< TFixedPointSet::PointDimension, TMovingPointSet::PointDimension >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::ParametersValueType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::DerivativeValueType	DerivativeValueType

typedef SizeValueType	DimensionType

typedef FixedTransformType::InputPointType	FixedInputPointType

typedef FixedTransformType::OutputPointType	FixedOutputPointType

typedef FixedTransformType::JacobianType	FixedTransformJacobianType

typedef FixedTransformType::ParametersType	FixedTransformParametersType

typedef FixedTransformType::Pointer	FixedTransformPointer

typedef Transform < ParametersValueType, Image < typename ObjectToObjectMetricBase::ParametersValueType, TFixedDimension > ::ImageDimension, TFixedDimension >	FixedTransformType

typedef Superclass::InternalComputationValueType	InternalComputationValueType

typedef FixedTransformType::JacobianType	JacobianType

typedef Superclass::MeasureType	MeasureType

typedef DisplacementFieldTransform < CoordinateRepresentationType, itkGetStaticConstMacro(MovingDimension) >	MovingDisplacementFieldTransformType

typedef MovingTransformType::InputPointType	MovingInputPointType

typedef MovingTransformType::OutputPointType	MovingOutputPointType

typedef MovingTransformType::JacobianType	MovingTransformJacobianType

typedef MovingTransformType::ParametersType	MovingTransformParametersType

typedef MovingTransformType::Pointer	MovingTransformPointer

typedef Transform < ParametersValueType, Image < typename ObjectToObjectMetricBase::ParametersValueType, TFixedDimension > ::ImageDimension, TMovingDimension >	MovingTransformType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef ObjectToObjectMetric	Self

typedef ObjectToObjectMetricBase	Superclass

typedef VirtualImageType::DirectionType	VirtualDirectionType

typedef VirtualImageType::ConstPointer	VirtualImageConstPointer

typedef VirtualImageType::Pointer	VirtualImagePointer

typedef Image< typename ObjectToObjectMetricBase::ParametersValueType, TFixedDimension >	VirtualImageType

typedef VirtualImageType::IndexType	VirtualIndexType

typedef VirtualImageType::PointType	VirtualOriginType

typedef VirtualImageType::PixelType	VirtualPixelType

typedef VirtualPointSetType::Pointer	VirtualPointSetPointer

typedef PointSet < VirtualPixelType, itkGetStaticConstMacro(VirtualDimension)>	VirtualPointSetType

typedef VirtualImageType::PointType	VirtualPointType

typedef VirtualImageType::SizeType	VirtualRadiusType

typedef VirtualImageType::RegionType	VirtualRegionType

typedef VirtualRegionType::SizeType	VirtualSizeType

typedef VirtualImageType::SpacingType	VirtualSpacingType

Public Types inherited from itk::ObjectToObjectMetricBase
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::ParametersValueType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef DerivativeType::ValueType	DerivativeValueType

enum	GradientSourceType { GRADIENT_SOURCE_FIXED =0, GRADIENT_SOURCE_MOVING, GRADIENT_SOURCE_BOTH }

typedef double	InternalComputationValueType

typedef Superclass::MeasureType	MeasureType

typedef unsigned int	NumberOfParametersType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef ObjectToObjectMetricBase	Self

typedef SingleValuedCostFunctionv4	Superclass

Public Types inherited from itk::SingleValuedCostFunctionv4
typedef SmartPointer< const Self >	ConstPointer

typedef Array < ParametersValueType >	DerivativeType

typedef double	MeasureType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef SingleValuedCostFunctionv4	Self

typedef CostFunction	Superclass

Public Types inherited from itk::CostFunction
typedef SmartPointer< const Self >	ConstPointer

typedef OptimizerParameters < ParametersValueType >	ParametersType

typedef double	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef CostFunction	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual void	GetDerivative (DerivativeType &) const

virtual const FixedPointSetType *	GetFixedPointSet ()

virtual const FixedTransformedPointSetType *	GetFixedTransformedPointSet ()

virtual LocalDerivativeType	GetLocalNeighborhoodDerivative (const PointType &, const PixelType &pixel=0) const

virtual MeasureType	GetLocalNeighborhoodValue (const PointType &, const PixelType &pixel=0) const =0

virtual void	GetLocalNeighborhoodValueAndDerivative (const PointType &, MeasureType &, LocalDerivativeType &, const PixelType &pixel=0) const =0

virtual const MovingPointSetType *	GetMovingPointSet ()

virtual const MovingTransformedPointSetType *	GetMovingTransformedPointSet ()

virtual const char *	GetNameOfClass () const

SizeValueType	GetNumberOfComponents () const

virtual MeasureType	GetValue () const

virtual void	GetValueAndDerivative (MeasureType &, DerivativeType &) const

const VirtualPointSetType *	GetVirtualTransformedPointSet ()

virtual void	Initialize (void) throw ( ExceptionObject )

virtual void	SetFixedPointSet (const FixedPointSetType *_arg)

virtual void	SetMovingPointSet (MovingPointSetType *_arg)

virtual bool	SupportsArbitraryVirtualDomainSamples (void) const

Public Member Functions inherited from itk::ObjectToObjectMetric< TFixedPointSet::PointDimension, TMovingPointSet::PointDimension >
OffsetValueType	ComputeParameterOffsetFromVirtualIndex (const VirtualIndexType &index, const NumberOfParametersType &numberOfLocalParameters) const

OffsetValueType	ComputeParameterOffsetFromVirtualPoint (const VirtualPointType &point, const NumberOfParametersType &numberOfLocalParameters) const

virtual const FixedTransformType *	GetFixedTransform ()

virtual const MovingTransformType *	GetMovingTransform ()

virtual NumberOfParametersType	GetNumberOfLocalParameters () const

virtual NumberOfParametersType	GetNumberOfParameters () const

virtual SizeValueType	GetNumberOfValidPoints () const

virtual const ParametersType &	GetParameters () const

const MovingTransformType *	GetTransform ()

VirtualDirectionType	GetVirtualDirection (void) const

virtual const TimeStamp &	GetVirtualDomainTimeStamp (void) const

virtual const VirtualImageType *	GetVirtualImage ()

VirtualOriginType	GetVirtualOrigin (void) const

const VirtualRegionType &	GetVirtualRegion (void) const

VirtualSpacingType	GetVirtualSpacing (void) const

virtual bool	HasLocalSupport () const

virtual void	SetFixedTransform (FixedTransformType *_arg)

virtual void	SetMovingTransform (MovingTransformType *_arg)

virtual void	SetParameters (ParametersType &params)

void	SetTransform (MovingTransformType *transform)

void	SetVirtualDomain (const VirtualSpacingType &spacing, const VirtualOriginType &origin, const VirtualDirectionType &direction, const VirtualRegionType &region)

virtual void	UpdateTransformParameters (const DerivativeType &derivative, ParametersValueType factor)

void	SetVirtualDomainFromImage (VirtualImageType *virtualImage)

void	SetVirtualDomainFromImage (const VirtualImageType *virtualImage)

bool	IsInsideVirtualDomain (const VirtualPointType &point) const

bool	IsInsideVirtualDomain (const VirtualIndexType &index) const

Public Member Functions inherited from itk::ObjectToObjectMetricBase
MeasureType	GetCurrentValue () const

virtual GradientSourceType	GetGradientSource () const

bool	GetGradientSourceIncludesFixed () const

bool	GetGradientSourceIncludesMoving () const

virtual void	GetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const =0

virtual void	SetGradientSource (GradientSourceType _arg)

Public Member Functions inherited from itk::SingleValuedCostFunctionv4
virtual void	GetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const =0

Static Public Attributes
static const DimensionType	FixedPointDimension = Superclass::FixedDimension

static const DimensionType	MovingPointDimension = Superclass::MovingDimension

static const DimensionType	PointDimension = Superclass::FixedDimension

Static Public Attributes inherited from itk::ObjectToObjectMetric< TFixedPointSet::PointDimension, TMovingPointSet::PointDimension >
static const DimensionType	FixedDimension

static const DimensionType	MovingDimension

static const DimensionType	VirtualDimension

Protected Member Functions
virtual SizeValueType	CalculateNumberOfValidFixedPoints (void) const

void	CalculateValueAndDerivative (MeasureType &value, DerivativeType &derivative, bool calculateValue) const

virtual void	InitializeForIteration (void) const

virtual void	InitializePointSets (void) const

void	InitializePointsLocators () const

	PointSetToPointSetMetricv4 ()

void	PrintSelf (std::ostream &os, Indent indent) const

void	StorePointDerivative (const VirtualPointType &, const DerivativeType &, DerivativeType &) const

void	TransformFixedAndCreateVirtualPointSet () const

void	TransformMovingPointSet () const

virtual	~PointSetToPointSetMetricv4 ()

Protected Member Functions inherited from itk::ObjectToObjectMetric< TFixedPointSet::PointDimension, TMovingPointSet::PointDimension >
MovingDisplacementFieldTransformType *	GetMovingDisplacementFieldTransform () const

	ObjectToObjectMetric ()

void	PrintSelf (std::ostream &os, Indent indent) const

bool	TransformPhysicalPointToVirtualIndex (const VirtualPointType &, VirtualIndexType &) const

void	TransformVirtualIndexToPhysicalPoint (const VirtualIndexType &, VirtualPointType &) const

virtual void	VerifyDisplacementFieldSizeAndPhysicalSpace ()

bool	VerifyNumberOfValidPoints (MeasureType &value, DerivativeType &derivative) const

virtual	~ObjectToObjectMetric ()

Protected Member Functions inherited from itk::ObjectToObjectMetricBase
	ObjectToObjectMetricBase ()

virtual	~ObjectToObjectMetricBase ()

Protected Member Functions inherited from itk::SingleValuedCostFunctionv4
	SingleValuedCostFunctionv4 ()

virtual	~SingleValuedCostFunctionv4 ()

Protected Member Functions inherited from itk::CostFunction
	CostFunction ()

virtual	~CostFunction ()

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
FixedPointSetType::ConstPointer	m_FixedPointSet

FixedTransformedPointSetType::Pointer	m_FixedTransformedPointSet

PointsLocatorType::Pointer	m_FixedTransformedPointsLocator

MovingPointSetType::ConstPointer	m_MovingPointSet

MovingTransformedPointSetType::Pointer	m_MovingTransformedPointSet

PointsLocatorType::Pointer	m_MovingTransformedPointsLocator

bool	m_UsePointSetData

VirtualPointSetPointer	m_VirtualTransformedPointSet

Protected Attributes inherited from itk::ObjectToObjectMetric< TFixedPointSet::PointDimension, TMovingPointSet::PointDimension >
FixedTransformPointer	m_FixedTransform

MovingTransformPointer	m_MovingTransform

SizeValueType	m_NumberOfValidPoints

bool	m_UserHasSetVirtualDomain

VirtualImagePointer	m_VirtualImage

Protected Attributes inherited from itk::ObjectToObjectMetricBase
GradientSourceType	m_GradientSource

MeasureType	m_Value

Private Member Functions
void	operator= (const Self &)

	PointSetToPointSetMetricv4 (const Self &)

Private Attributes
ModifiedTimeType	m_FixedTransformedPointSetTime

bool	m_FixedTransformPointLocatorsNeedInitialization

bool	m_HaveWarnedAboutNumberOfValidPoints

ModifiedTimeType	m_MovingTransformedPointSetTime

bool	m_MovingTransformPointLocatorsNeedInitialization

Additional Inherited Members
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Protected Types inherited from itk::LightObject
typedef int	InternalReferenceCountType