ITK  4.3.0
Insight Segmentation and Registration Toolkit
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itk::RegistrationParameterScalesFromJacobian< TMetric > Class Template Reference

#include <itkRegistrationParameterScalesFromJacobian.h>

+ Inheritance diagram for itk::RegistrationParameterScalesFromJacobian< TMetric >:
+ Collaboration diagram for itk::RegistrationParameterScalesFromJacobian< TMetric >:

Detailed Description

template<class TMetric>
class itk::RegistrationParameterScalesFromJacobian< TMetric >

Implements a registration helper class for estimating scales of transform parameters from Jacobian norms.

Its input includes the fixed/moving images and transform objects, which can be obtained from the metric object.

The scale of a parameter is estimated from the averaged squared norm of the Jacobian w.r.t the parameter. The averaging is done over a sampling of the image domain. The sampling by default is a uniform random distribution.

Definition at line 41 of file itkRegistrationParameterScalesFromJacobian.h.

Public Types

typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::FixedTransformType 
FixedTransformType
 
typedef Superclass::FloatType FloatType
 
typedef Superclass::JacobianType JacobianType
 
typedef
Superclass::MovingTransformType 
MovingTransformType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::ScalesType ScalesType
 
typedef
RegistrationParameterScalesFromJacobian 
Self
 
typedef
RegistrationParameterScalesEstimator
< TMetric > 
Superclass
 
typedef
Superclass::VirtualImageConstPointer 
VirtualImageConstPointer
 
typedef
Superclass::VirtualIndexType 
VirtualIndexType
 
typedef
Superclass::VirtualPointType 
VirtualPointType
 
- Public Types inherited from itk::RegistrationParameterScalesEstimator< TMetric >
typedef SmartPointer< const SelfConstPointer
 
typedef
FixedTransformType::ConstPointer 
FixedTransformConstPointer
 
typedef
MetricType::FixedTransformType 
FixedTransformType
 
typedef Superclass::FloatType FloatType
 
typedef TMetric::JacobianType JacobianType
 
typedef MetricType::ConstPointer MetricConstPointer
 
typedef MetricType::Pointer MetricPointer
 
typedef TMetric MetricType
 
typedef
MovingTransformType::ConstPointer 
MovingTransformConstPointer
 
typedef
MetricType::MovingTransformType 
MovingTransformType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef std::vector
< VirtualPointType
SamplePointContainerType
 
enum  SamplingStrategyType {
  FullDomainSampling = 0,
  CornerSampling,
  RandomSampling,
  CentralRegionSampling,
  VirtualDomainPointSetSampling
}
 
typedef Superclass::ScalesType ScalesType
 
typedef
RegistrationParameterScalesEstimator 
Self
 
typedef
OptimizerParameterScalesEstimator 
Superclass
 
typedef
TMetric::VirtualImageConstPointer 
VirtualImageConstPointer
 
typedef
TMetric::VirtualImagePointer 
VirtualImagePointer
 
typedef TMetric::VirtualImageType VirtualImageType
 
typedef TMetric::VirtualIndexType VirtualIndexType
 
typedef
TMetric::VirtualPointSetPointer 
VirtualPointSetPointer
 
typedef
TMetric::VirtualPointSetType 
VirtualPointSetType
 
typedef TMetric::VirtualPointType VirtualPointType
 
typedef TMetric::VirtualRegionType VirtualRegionType
 
typedef TMetric::VirtualSizeType VirtualSizeType
 
typedef TMetric::VirtualSpacingType VirtualSpacingType
 
- Public Types inherited from itk::OptimizerParameterScalesEstimator
typedef SmartPointer< const SelfConstPointer
 
typedef double FloatType
 
typedef
ObjectToObjectOptimizerBase::ParametersType 
ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef
ObjectToObjectOptimizerBase::ScalesType 
ScalesType
 
typedef
OptimizerParameterScalesEstimator 
Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual void EstimateLocalStepScales (const ParametersType &step, ScalesType &localStepScales)
 
virtual void EstimateScales (ScalesType &scales)
 
virtual FloatType EstimateStepScale (const ParametersType &step)
 
virtual const char * GetNameOfClass () const
 
- Public Member Functions inherited from itk::RegistrationParameterScalesEstimator< TMetric >
virtual FloatType EstimateMaximumStepSize ()
 
virtual void SetCentralRegionRadius (IndexValueType _arg)
 
virtual void SetMetric (MetricType *_arg)
 
virtual void SetScalesSamplingStrategy ()
 
virtual void SetStepScaleSamplingStrategy ()
 
virtual void SetTransformForward (bool _arg)
 
virtual bool GetTransformForward () const
 
virtual void SetVirtualDomainPointSet (VirtualPointSetType *_arg)
 
virtual void SetVirtualDomainPointSet (const VirtualPointSetType *_arg)
 
virtual const VirtualPointSetTypeGetVirtualDomainPointSet ()
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

void ComputeSampleStepScales (const ParametersType &step, ScalesType &sampleScales)
 
virtual void PrintSelf (std::ostream &os, Indent indent) const
 
 RegistrationParameterScalesFromJacobian ()
 
 ~RegistrationParameterScalesFromJacobian ()
 
- Protected Member Functions inherited from itk::RegistrationParameterScalesEstimator< TMetric >
bool CheckAndSetInputs ()
 
bool CheckGeneralAffineTransform ()
 
template<class TTransform >
bool CheckGeneralAffineTransformTemplated ()
 
void ComputeSquaredJacobianNorms (const VirtualPointType &p, ParametersType &squareNorms)
 
SizeValueType GetDimension ()
 
SizeValueType GetNumberOfLocalParameters ()
 
virtual SamplingStrategyType GetSamplingStrategy ()
 
const TransformBaseGetTransform ()
 
VirtualIndexType GetVirtualDomainCentralIndex ()
 
VirtualRegionType GetVirtualDomainCentralRegion ()
 
bool IsBSplineTransform ()
 
bool IsDisplacementFieldTransform ()
 
 RegistrationParameterScalesEstimator ()
 
virtual void SampleVirtualDomain ()
 
void SampleVirtualDomainFully ()
 
void SampleVirtualDomainRandomly ()
 
void SampleVirtualDomainWithCentralRegion ()
 
void SampleVirtualDomainWithCorners ()
 
void SampleVirtualDomainWithPointSet ()
 
void SampleVirtualDomainWithRegion (VirtualRegionType region)
 
virtual void SetNumberOfRandomSamples (SizeValueType _arg)
 
virtual void SetSamplingStrategy (SamplingStrategyType _arg)
 
bool TransformHasLocalSupportForScalesEstimation ()
 
template<class TTargetPointType >
void TransformPoint (const VirtualPointType &point, TTargetPointType &mappedPoint)
 
template<class TContinuousIndexType >
void TransformPointToContinuousIndex (const VirtualPointType &point, TContinuousIndexType &mappedIndex)
 
void UpdateTransformParameters (const ParametersType &deltaParameters)
 
 ~RegistrationParameterScalesEstimator ()
 
- Protected Member Functions inherited from itk::OptimizerParameterScalesEstimator
 OptimizerParameterScalesEstimator ()
 
 ~OptimizerParameterScalesEstimator ()
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Member Functions

void operator= (const Self &)
 
 RegistrationParameterScalesFromJacobian (const Self &)
 

Additional Inherited Members

- Static Public Attributes inherited from itk::RegistrationParameterScalesEstimator< TMetric >
static const SizeValueType FixedDimension = TMetric::FixedDimension
 
static const SizeValueType MovingDimension = TMetric::MovingDimension
 
static const SizeValueType VirtualDimension = TMetric::VirtualDimension
 
- Protected Types inherited from itk::LightObject
typedef int InternalReferenceCountType
 
- Protected Attributes inherited from itk::RegistrationParameterScalesEstimator< TMetric >
IndexValueType m_CentralRegionRadius
 
MetricPointer m_Metric
 
SizeValueType m_NumberOfRandomSamples
 
SamplePointContainerType m_SamplePoints
 
TimeStamp m_SamplingTime
 
VirtualPointSetType::ConstPointer m_VirtualDomainPointSet
 
- Static Protected Attributes inherited from itk::RegistrationParameterScalesEstimator< TMetric >
static const SizeValueType SizeOfSmallDomain = 1000
 

Member Typedef Documentation

template<class TMetric >
typedef SmartPointer<const Self> itk::RegistrationParameterScalesFromJacobian< TMetric >::ConstPointer

Definition at line 49 of file itkRegistrationParameterScalesFromJacobian.h.

template<class TMetric >
typedef Superclass::FixedTransformType itk::RegistrationParameterScalesFromJacobian< TMetric >::FixedTransformType

Definition at line 69 of file itkRegistrationParameterScalesFromJacobian.h.

template<class TMetric >
typedef Superclass::FloatType itk::RegistrationParameterScalesFromJacobian< TMetric >::FloatType

Type of float

Definition at line 64 of file itkRegistrationParameterScalesFromJacobian.h.

template<class TMetric >
typedef Superclass::JacobianType itk::RegistrationParameterScalesFromJacobian< TMetric >::JacobianType

Definition at line 70 of file itkRegistrationParameterScalesFromJacobian.h.

template<class TMetric >
typedef Superclass::MovingTransformType itk::RegistrationParameterScalesFromJacobian< TMetric >::MovingTransformType

Definition at line 68 of file itkRegistrationParameterScalesFromJacobian.h.

template<class TMetric >
typedef Superclass::ParametersType itk::RegistrationParameterScalesFromJacobian< TMetric >::ParametersType

Type of parameters of the optimizer

Definition at line 61 of file itkRegistrationParameterScalesFromJacobian.h.

template<class TMetric >
typedef SmartPointer<Self> itk::RegistrationParameterScalesFromJacobian< TMetric >::Pointer

Definition at line 48 of file itkRegistrationParameterScalesFromJacobian.h.

template<class TMetric >
typedef Superclass::ScalesType itk::RegistrationParameterScalesFromJacobian< TMetric >::ScalesType

Type of scales

Definition at line 55 of file itkRegistrationParameterScalesFromJacobian.h.

Standard class typedefs.

Definition at line 46 of file itkRegistrationParameterScalesFromJacobian.h.

template<class TMetric >
typedef RegistrationParameterScalesEstimator< TMetric > itk::RegistrationParameterScalesFromJacobian< TMetric >::Superclass

Definition at line 47 of file itkRegistrationParameterScalesFromJacobian.h.

template<class TMetric >
typedef Superclass::VirtualImageConstPointer itk::RegistrationParameterScalesFromJacobian< TMetric >::VirtualImageConstPointer

Definition at line 71 of file itkRegistrationParameterScalesFromJacobian.h.

template<class TMetric >
typedef Superclass::VirtualIndexType itk::RegistrationParameterScalesFromJacobian< TMetric >::VirtualIndexType

Definition at line 67 of file itkRegistrationParameterScalesFromJacobian.h.

template<class TMetric >
typedef Superclass::VirtualPointType itk::RegistrationParameterScalesFromJacobian< TMetric >::VirtualPointType

Definition at line 66 of file itkRegistrationParameterScalesFromJacobian.h.

Constructor & Destructor Documentation

template<class TMetric >
itk::RegistrationParameterScalesFromJacobian< TMetric >::~RegistrationParameterScalesFromJacobian ( )
inlineprotected
template<class TMetric >
itk::RegistrationParameterScalesFromJacobian< TMetric >::RegistrationParameterScalesFromJacobian ( const Self )
private

Member Function Documentation

template<class TMetric >
void itk::RegistrationParameterScalesFromJacobian< TMetric >::ComputeSampleStepScales ( const ParametersType step,
ScalesType sampleScales 
)
protected

Compute the step scales for samples, i.e. the impacts on each sampled voxel from a change on the transform.

template<class TMetric >
virtual::itk::LightObject::Pointer itk::RegistrationParameterScalesFromJacobian< TMetric >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<class TMetric >
virtual void itk::RegistrationParameterScalesFromJacobian< TMetric >::EstimateLocalStepScales ( const ParametersType step,
ScalesType localStepScales 
)
virtual

Estimate the scales of local steps.

Implements itk::RegistrationParameterScalesEstimator< TMetric >.

template<class TMetric >
virtual void itk::RegistrationParameterScalesFromJacobian< TMetric >::EstimateScales ( ScalesType scales)
virtual

Estimate parameter scales.

Implements itk::RegistrationParameterScalesEstimator< TMetric >.

template<class TMetric >
virtual FloatType itk::RegistrationParameterScalesFromJacobian< TMetric >::EstimateStepScale ( const ParametersType step)
virtual

Estimate the scale for $\Delta p$, the step of change on parameters. The step scale describes the impact of $\Delta p$ on the transform.

Let us denote the transform by

\[ T(x, p) = T(x, p_0 + t * \Delta p) \]

where $x$ is the coordinates of a voxel, $p = p_0+t*\Delta p$ is the transform parameters, and $t$ is the step factor.

At a specific voxel at $x$, the step scale w.r.t. $\Delta p$ is defined here as

\[ |\frac{dT}{dt}| = |\frac{\partial T}{\partial p} * \Delta p |. \]

For multiple voxels, we average the above formula to get the overall step scale.

Implements itk::RegistrationParameterScalesEstimator< TMetric >.

template<class TMetric >
virtual const char* itk::RegistrationParameterScalesFromJacobian< TMetric >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::RegistrationParameterScalesEstimator< TMetric >.

template<class TMetric >
static Pointer itk::RegistrationParameterScalesFromJacobian< TMetric >::New ( )
static

New macro for creation of through a Smart Pointer.

template<class TMetric >
void itk::RegistrationParameterScalesFromJacobian< TMetric >::operator= ( const Self )
private
template<class TMetric >
virtual void itk::RegistrationParameterScalesFromJacobian< TMetric >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::RegistrationParameterScalesEstimator< TMetric >.


The documentation for this class was generated from the following file: