itk::bio::CellBase Class Reference

#include <itkBioCellBase.h>

Inheritance diagram for itk::bio::CellBase:

Collaboration diagram for itk::bio::CellBase:

Detailed Description

Non-templated Base class from which the templated Cell classes will be derived.

Derived classes are instantiated for a specific space dimension.

Definition at line 36 of file itkBioCellBase.h.

Public Types
enum	CellCycleState {   M = 1UL,   Gap1,   S,   Gap2,   Gap0,   Apop }
typedef itk::RGBPixel< float >	ColorType
typedef GenomeType::GeneIdType	GeneIdType
typedef itk::bio::Genome	GenomeType
typedef itk::IdentifierType	IdentifierType

Public Member Functions
virtual ColorType	GetColor (void) const
IdentifierType	GetParentIdentifier (void) const
double	GetRadius (void) const
IdentifierType	GetSelfIdentifier (void) const
virtual bool	MarkedForRemoval (void) const

Static Public Member Functions
static SizeValueType	GetDivisionMaximumLatencyTime (void)
static SizeValueType	GetGrowthMaximumLatencyTime (void)
static double	GetGrowthRadiusLimit (void)
static void	Initialize (void)
static void	ResetCounter (void)
static void	SetChemoAttractantHighThreshold (double)
static void	SetChemoAttractantLowThreshold (double)
static void	SetDefaultColor (const ColorType &color)
static void	SetDefaultRadius (double)
static void	SetDivisionMaximumLatencyTime (SizeValueType)
static void	SetEnergySelfRepairLevel (double)
static void	SetGrowthMaximumLatencyTime (SizeValueType latency)
static void	SetGrowthRadiusIncrement (double)
static void	SetGrowthRadiusLimit (double)
static void	SetMaximumGenerationLimit (SizeValueType)
static void	SetNutrientSelfRepairLevel (double)

Protected Member Functions
virtual void	Apoptosis (void)
	CellBase ()
virtual bool	CheckPointApoptosis (void)
virtual bool	CheckPointDNAReplication (void)
virtual bool	CheckPointGrowth (void)
virtual bool	CheckPointMitosis (void)
virtual void	ComputeGeneNetwork (void)
virtual void	DNAReplication (void)
virtual void	EnergyIntake (void)
virtual void	Grow (void)
void	MarkForRemoval (void)
virtual void	NutrientsIntake (void)
virtual void	SecreteProducts (void)
virtual	~CellBase ()

Protected Attributes
double	m_ChemoAttractantLevel
ColorType	m_Color
CellCycleState	m_CycleState
SizeValueType	m_DivisionLatencyTime
double	m_EnergyReserveLevel
SizeValueType	m_Generation
GenomeType *	m_Genome
GenomeType *	m_GenomeCopy
SizeValueType	m_GrowthLatencyTime
bool	m_MarkedForRemoval
double	m_NutrientsReserveLevel
IdentifierType	m_ParentIdentifier
double	m_Pressure
double	m_Radius
bool	m_ScheduleApoptosis
IdentifierType	m_SelfIdentifier

Static Protected Attributes
static GeneIdType	BlueGene
static GeneIdType	Caspase
static GeneIdType	Cdk2E
static double	ChemoAttractantHighThreshold
static double	ChemoAttractantLowThreshold
static SizeValueType	Counter
static ColorType	DefaultColor
static double	DefaultEnergyIntake
static double	DefaultNutrientsIntake
static double	DefaultRadius
static SizeValueType	DivisionMaximumLatencyTime
static double	EnergySelfRepairLevel
static GeneIdType	GreenGene
static SizeValueType	GrowthMaximumLatencyTime
static double	GrowthRadiusIncrement
static double	GrowthRadiusLimit
static ColorType	HopefullColor
static SizeValueType	MaximumGenerationLimit
static double	NutrientSelfRepairLevel
static GeneIdType	Pressurin
static GeneIdType	RedGene
static ColorType	StarvingColor
static ColorType	WellNourishedColor

Member Typedef Documentation

typedef itk::RGBPixel< float > itk::bio::CellBase::ColorType

Definition at line 39 of file itkBioCellBase.h.

typedef GenomeType::GeneIdType itk::bio::CellBase::GeneIdType

Definition at line 42 of file itkBioCellBase.h.

typedef itk::bio::Genome itk::bio::CellBase::GenomeType

Definition at line 41 of file itkBioCellBase.h.

typedef itk::IdentifierType itk::bio::CellBase::IdentifierType

Definition at line 40 of file itkBioCellBase.h.

Member Enumeration Documentation

enum itk::bio::CellBase::CellCycleState

Enumerator:

M
Gap1
S
Gap2
Gap0
Apop

Definition at line 52 of file itkBioCellBase.h.

Constructor & Destructor Documentation

itk::bio::CellBase::CellBase ( )

protected

virtual itk::bio::CellBase::~CellBase ( )

protectedvirtual

Member Function Documentation

virtual void itk::bio::CellBase::Apoptosis ( void  )

protectedvirtual

Reimplemented in itk::bio::Cell< NSpaceDimension >.

virtual bool itk::bio::CellBase::CheckPointApoptosis ( void  )

protectedvirtual

virtual bool itk::bio::CellBase::CheckPointDNAReplication ( void  )

protectedvirtual

virtual bool itk::bio::CellBase::CheckPointGrowth ( void  )

protectedvirtual

virtual bool itk::bio::CellBase::CheckPointMitosis ( void  )

protectedvirtual

virtual void itk::bio::CellBase::ComputeGeneNetwork ( void  )

protectedvirtual

virtual void itk::bio::CellBase::DNAReplication ( void  )

protectedvirtual

virtual void itk::bio::CellBase::EnergyIntake ( void  )

protectedvirtual

virtual ColorType itk::bio::CellBase::GetColor ( void  ) const

virtual

static SizeValueType itk::bio::CellBase::GetDivisionMaximumLatencyTime ( void  )

static

static SizeValueType itk::bio::CellBase::GetGrowthMaximumLatencyTime ( void  )

static

static double itk::bio::CellBase::GetGrowthRadiusLimit ( void  )

static

IdentifierType itk::bio::CellBase::GetParentIdentifier

(

void

)

const

double itk::bio::CellBase::GetRadius

(

void

)

const

IdentifierType itk::bio::CellBase::GetSelfIdentifier

(

void

)

const

virtual void itk::bio::CellBase::Grow ( void  )

protectedvirtual

static void itk::bio::CellBase::Initialize ( void  )

static

virtual bool itk::bio::CellBase::MarkedForRemoval ( void  ) const

virtual

void itk::bio::CellBase::MarkForRemoval ( void  )

protected

virtual void itk::bio::CellBase::NutrientsIntake ( void  )

protectedvirtual

static void itk::bio::CellBase::ResetCounter ( void  )

static

virtual void itk::bio::CellBase::SecreteProducts ( void  )

protectedvirtual

static void itk::bio::CellBase::SetChemoAttractantHighThreshold ( double  )

static

static void itk::bio::CellBase::SetChemoAttractantLowThreshold ( double  )

static

static void itk::bio::CellBase::SetDefaultColor ( const ColorType &  color )

static

static void itk::bio::CellBase::SetDefaultRadius ( double  )

static

static void itk::bio::CellBase::SetDivisionMaximumLatencyTime ( SizeValueType  )

static

static void itk::bio::CellBase::SetEnergySelfRepairLevel ( double  )

static

static void itk::bio::CellBase::SetGrowthMaximumLatencyTime ( SizeValueType  latency )

static

static void itk::bio::CellBase::SetGrowthRadiusIncrement ( double  )

static

static void itk::bio::CellBase::SetGrowthRadiusLimit ( double  )

static

static void itk::bio::CellBase::SetMaximumGenerationLimit ( SizeValueType  )

static

static void itk::bio::CellBase::SetNutrientSelfRepairLevel ( double  )

static

Member Data Documentation

GeneIdType itk::bio::CellBase::BlueGene

staticprotected

Definition at line 93 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::Caspase

staticprotected

Definition at line 97 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::Cdk2E

staticprotected

Definition at line 96 of file itkBioCellBase.h.

double itk::bio::CellBase::ChemoAttractantHighThreshold

staticprotected

Definition at line 118 of file itkBioCellBase.h.

double itk::bio::CellBase::ChemoAttractantLowThreshold

staticprotected

Definition at line 117 of file itkBioCellBase.h.

SizeValueType itk::bio::CellBase::Counter

staticprotected

Definition at line 111 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::DefaultColor

staticprotected

Definition at line 91 of file itkBioCellBase.h.

double itk::bio::CellBase::DefaultEnergyIntake

staticprotected

Definition at line 108 of file itkBioCellBase.h.

double itk::bio::CellBase::DefaultNutrientsIntake

staticprotected

Definition at line 109 of file itkBioCellBase.h.

double itk::bio::CellBase::DefaultRadius

staticprotected

Definition at line 123 of file itkBioCellBase.h.

SizeValueType itk::bio::CellBase::DivisionMaximumLatencyTime

staticprotected

Definition at line 103 of file itkBioCellBase.h.

double itk::bio::CellBase::EnergySelfRepairLevel

staticprotected

Definition at line 105 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::GreenGene

staticprotected

Definition at line 95 of file itkBioCellBase.h.

SizeValueType itk::bio::CellBase::GrowthMaximumLatencyTime

staticprotected

Definition at line 102 of file itkBioCellBase.h.

double itk::bio::CellBase::GrowthRadiusIncrement

staticprotected

Definition at line 125 of file itkBioCellBase.h.

double itk::bio::CellBase::GrowthRadiusLimit

staticprotected

Definition at line 124 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::HopefullColor

staticprotected

Definition at line 114 of file itkBioCellBase.h.

double itk::bio::CellBase::m_ChemoAttractantLevel

protected

Definition at line 185 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::m_Color

protected

Definition at line 166 of file itkBioCellBase.h.

CellCycleState itk::bio::CellBase::m_CycleState

protected

Definition at line 179 of file itkBioCellBase.h.

SizeValueType itk::bio::CellBase::m_DivisionLatencyTime

protected

Definition at line 182 of file itkBioCellBase.h.

double itk::bio::CellBase::m_EnergyReserveLevel

protected

Definition at line 169 of file itkBioCellBase.h.

SizeValueType itk::bio::CellBase::m_Generation

protected

Definition at line 177 of file itkBioCellBase.h.

GenomeType* itk::bio::CellBase::m_Genome

protected

Definition at line 120 of file itkBioCellBase.h.

GenomeType* itk::bio::CellBase::m_GenomeCopy

protected

Definition at line 121 of file itkBioCellBase.h.

SizeValueType itk::bio::CellBase::m_GrowthLatencyTime

protected

Definition at line 172 of file itkBioCellBase.h.

bool itk::bio::CellBase::m_MarkedForRemoval

protected

Definition at line 181 of file itkBioCellBase.h.

double itk::bio::CellBase::m_NutrientsReserveLevel

protected

Definition at line 170 of file itkBioCellBase.h.

IdentifierType itk::bio::CellBase::m_ParentIdentifier

protected

Definition at line 174 of file itkBioCellBase.h.

double itk::bio::CellBase::m_Pressure

protected

Definition at line 164 of file itkBioCellBase.h.

double itk::bio::CellBase::m_Radius

protected

Definition at line 168 of file itkBioCellBase.h.

bool itk::bio::CellBase::m_ScheduleApoptosis

protected

Definition at line 184 of file itkBioCellBase.h.

IdentifierType itk::bio::CellBase::m_SelfIdentifier

protected

Definition at line 175 of file itkBioCellBase.h.

SizeValueType itk::bio::CellBase::MaximumGenerationLimit

staticprotected

Definition at line 101 of file itkBioCellBase.h.

double itk::bio::CellBase::NutrientSelfRepairLevel

staticprotected

Definition at line 106 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::Pressurin

staticprotected

Definition at line 98 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::RedGene

staticprotected

Definition at line 94 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::StarvingColor

staticprotected

Definition at line 115 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::WellNourishedColor

staticprotected

Definition at line 113 of file itkBioCellBase.h.

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The documentation for this class was generated from the following file:

• itkBioCellBase.h