#include <itkFiniteDifferenceImageFilter.h>

Inheritance diagram for itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >:

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >

The Finite Difference Solver Hierarchy

: This is an overview of the Finite Difference Solver (FDS) framework. The FDS framework is a set of classes for creating filters to solve partial differential equations on images using an iterative, finite difference update scheme.

: The high-level algorithm implemented by the framework can be described by the following pseudocode.

WHILE NOT convergence:
   FOR ALL pixels i
      time_step = calculate_change(i)
      update(i, time_step)

: The following equation describes update at pixel on discrete image :

$u_{\mathbf{i}}^{n+1}=u^n_{\mathbf{i}}+\Delta u^n_{\mathbf{i}}\Delta t$

Component objects: The FDS hierarchy is comprised of two component object types, variations of which are designed to be plugged together to create filters for different applications. At the process level are the "solver" objects, which are subclasses of FiniteDifferenceImageFilter. Solver objects are filters that take image inputs and produce image outputs. Solver objects require a FiniteDifferenceFunction object to perform the calculation at each image pixel during iteration. These specialized function objects are subclasses of FiniteDifferenceFunction. FiniteDifferenceFunction take a neighborhood of pixels as input (in the form of an itk::NeighborhoodIterator) and produce a scalar valued result.

: Filters for different applications are created by defining a function object to handle the numerical calculations and choosing (or creating) a solver object that reflects the requirements and constraints of the application.

For example, anisotropic diffusion filters are created by plugging anisotropic diffusion functions into the DenseFiniteDifferenceImageFilter.

The separation between function object and solver object allows us to create, for example, sparse-field, dense-field, and narrow-band implementations of a level-set surface evolution filter can all be constructed by plugging the same function object into three different, specialized solvers.

Creating new filters in this hierarchy: The procedure for creating a filter within the FDS hierarchy is to identify all the virtual methods that need to be defined for your particular application. In the simplest case, a filter needs only to instantiate a specific function object and define some halting criteria. For more complicated applications, you may need to define a specialized type of iteration scheme or updating procedure in a higher-level solver object.

: Some simple examples are the specific subclasses of AnisotropicDiffusionImageFilter. The leaves of the anisotropic diffusion filter tree only define the function object they use for their particular flavor of diffusion. See CurvatureAnisotropicDiffusionImageFilter and GradientAnisotropicDiffusionImageFilter for details.

FiniteDifferenceImageFilter: This class defines the generic solver API at the top level of the FDS framework. FiniteDifferenceImageFilter is an abstract class that implements the generic, high-level algorithm (described above).

Inputs and Outputs: This filter is an ImageToImage filter. Depending on the specific subclass implementation, finite difference image filters may process a variety of image types. The input to the filter is the initial value of and the output of the filter is the solution to the P.D.E.

How to use this class

GenerateData() relies on several virtual methods that must be defined by a subclass. Specifically:

AllocateUpdateBuffer()
ApplyUpdate()
CalculateChange()
Halt(). To create a finite difference solver, implement a subclass to define these methods.

: Note that there is no fixed container type for the buffer used to hold the update $\Delta$ . The container might be another image, or simply a list of values. AllocateUpdateBuffer is responsible for creating the $\Delta$ container. CalculateChange populates this buffer and ApplyUpdate adds the buffer values to the output image (solution). The boolean Halt() (or ThreadedHalt()) method returns a true value to stop iteration.

See Also: DenseFiniteDifferenceImageFilter

Definition at line 132 of file itkFiniteDifferenceImageFilter.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef FiniteDifferenceFunction < TOutputImage >	FiniteDifferenceFunctionType

typedef TInputImage	InputImageType

typedef TInputImage::PixelType	InputPixelType

typedef NumericTraits < InputPixelType >::ValueType	InputPixelValueType

typedef FiniteDifferenceFunctionType::NeighborhoodScalesType	NeighborhoodScalesType

typedef TOutputImage	OutputImageType

typedef TOutputImage::PixelType	OutputPixelType

typedef NumericTraits < OutputPixelType >::ValueType	OutputPixelValueType

typedef OutputPixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef FiniteDifferenceFunctionType::RadiusType	RadiusType

typedef FiniteDifferenceImageFilter	Self

typedef InPlaceImageFilter < TInputImage, TOutputImage >	Superclass

typedef FiniteDifferenceFunctionType::TimeStepType	TimeStepType

Public Types inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::PixelType	InputImagePixelType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::RegionType	InputImageRegionType

typedef TInputImage	InputImageType

typedef Superclass::OutputImagePixelType	OutputImagePixelType

typedef Superclass::OutputImagePointer	OutputImagePointer

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef Superclass::OutputImageType	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef InPlaceImageFilter	Self

typedef ImageToImageFilter < TInputImage, TOutputImage >	Superclass

Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::PixelType	InputImagePixelType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::RegionType	InputImageRegionType

typedef TInputImage	InputImageType

typedef Superclass::OutputImagePixelType	OutputImagePixelType

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef SmartPointer< Self >	Pointer

typedef ImageToImageFilter	Self

typedef ImageSource< TOutputImage >	Superclass

Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType

typedef OutputImageType::PixelType	OutputImagePixelType

typedef OutputImageType::Pointer	OutputImagePointer

typedef OutputImageType::RegionType	OutputImageRegionType

typedef TOutputImage	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef ImageSource	Self

typedef ProcessObject	Superclass

Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer

typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef std::vector < DataObjectPointer >	DataObjectPointerArray

typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType

typedef std::vector < DataObjectIdentifierType >	NameArray

typedef SmartPointer< Self >	Pointer

typedef ProcessObject	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual const FiniteDifferenceFunctionType::Pointer &	GetDifferenceFunction () const

virtual const IdentifierType &	GetElapsedIterations ()

virtual bool	GetIsInitialized ()

virtual const char *	GetNameOfClass () const

virtual void	SetDifferenceFunction (FiniteDifferenceFunctionType *_arg)

virtual void	SetIsInitialized (bool _arg)

void	SetStateToInitialized ()

void	SetStateToUninitialized ()


virtual void	SetNumberOfIterations (IdentifierType _arg)

virtual const IdentifierType &	GetNumberOfIterations ()


virtual void	SetUseImageSpacing (bool _arg)

virtual void	UseImageSpacingOn ()

virtual void	UseImageSpacingOff ()

virtual const bool &	GetUseImageSpacing ()


virtual void	SetMaximumRMSError (double _arg)

virtual const double &	GetMaximumRMSError ()


virtual void	SetRMSChange (double _arg)

virtual const double &	GetRMSChange ()


virtual void	SetManualReinitialization (bool _arg)

virtual const bool &	GetManualReinitialization ()

virtual void	ManualReinitializationOn ()

virtual void	ManualReinitializationOff ()

Public Member Functions inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
virtual bool	CanRunInPlace () const

virtual void	SetInPlace (bool _arg)

virtual bool	GetInPlace () const

virtual void	InPlaceOn ()

virtual void	InPlaceOff ()

Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageType *	GetInput (void) const

const InputImageType *	GetInput (unsigned int idx) const

virtual void	PopBackInput ()

virtual void	PopFrontInput ()

virtual void	PushBackInput (const InputImageType *image)

virtual void	PushFrontInput (const InputImageType *image)

virtual void	SetInput (const InputImageType *image)

virtual void	SetInput (unsigned int, const TInputImage *image)

virtual void	SetCoordinateTolerance (double _arg)

virtual double	GetCoordinateTolerance () const

virtual void	SetDirectionTolerance (double _arg)

virtual double	GetDirectionTolerance () const

Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)

virtual void	GraftNthOutput (unsigned int idx, DataObject *output)

virtual void	GraftOutput (DataObject *output)

virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)

OutputImageType *	GetOutput (void)

const OutputImageType *	GetOutput (void) const

virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)

Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual void	EnlargeOutputRequestedRegion (DataObject *)

virtual const bool &	GetAbortGenerateData ()

NameArray	GetInputNames () const

MultiThreader *	GetMultiThreader () const

DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

NameArray	GetOutputNames () const

virtual const float &	GetProgress ()

NameArray	GetRequiredInputNames () const

bool	HasInput (const DataObjectIdentifierType &key) const

bool	HasOutput (const DataObjectIdentifierType &key) const

virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)

virtual void	PrepareOutputs ()

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

virtual void	SetProgress (float _arg)

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float amount)

DataObjectPointerArray	GetInputs ()

DataObjectPointerArray	GetOutputs ()

DataObjectPointerArray	GetIndexedInputs ()

DataObjectPointerArray	GetIndexedOutputs ()

DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const

virtual void	SetReleaseDataFlag (bool flag)

virtual bool	GetReleaseDataFlag () const

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual const bool &	GetReleaseDataBeforeUpdateFlag ()

virtual void	ReleaseDataBeforeUpdateFlagOn ()

virtual void	ReleaseDataBeforeUpdateFlagOff ()

virtual void	SetNumberOfThreads (ThreadIdType _arg)

virtual const ThreadIdType &	GetNumberOfThreads ()

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual LightObject::Pointer	CreateAnother () const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary (void)

const MetaDataDictionary &	GetMetaDataDictionary (void) const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int)

virtual void	UnRegister () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Attributes
static const unsigned int	ImageDimension = OutputImageType::ImageDimension

Static Public Attributes inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
static const unsigned int	InputImageDimension = TInputImage::ImageDimension

static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int	InputImageDimension = TInputImage::ImageDimension

static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Protected Member Functions
virtual void	AllocateUpdateBuffer ()=0

virtual void	ApplyUpdate (const TimeStepType &dt)=0

virtual TimeStepType	CalculateChange ()=0

virtual void	CopyInputToOutput ()=0

	FiniteDifferenceImageFilter ()

virtual void	GenerateData ()

virtual void	GenerateInputRequestedRegion ()

virtual bool	Halt ()

virtual void	Initialize ()

virtual void	InitializeIteration ()

virtual void	PostProcessOutput ()

void	PrintSelf (std::ostream &os, Indent indent) const

virtual TimeStepType	ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const

virtual void	SetElapsedIterations (IdentifierType _arg)

virtual bool	ThreadedHalt (void *)

virtual	~FiniteDifferenceImageFilter ()

Protected Member Functions inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
virtual void	AllocateOutputs ()

virtual bool	GetRunningInPlace () const

	InPlaceImageFilter ()

virtual void	ReleaseInputs ()

	~InPlaceImageFilter ()

Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)

virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)

	ImageToImageFilter ()

virtual void	VerifyInputInformation ()

	~ImageToImageFilter ()

void	PushBackInput (const DataObject *input)

void	PushFrontInput (const DataObject *input)

Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()

virtual void	BeforeThreadedGenerateData ()

virtual const ImageRegionSplitterBase *	GetImageRegionSplitter (void) const

	ImageSource ()

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)

virtual	~ImageSource ()

Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)

virtual void	AddOutput (DataObject *output)

virtual void	CacheInputReleaseDataFlags ()

virtual void	GenerateOutputInformation ()

virtual void	GenerateOutputRequestedRegion (DataObject *output)

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs ()

bool	IsIndexedInputName (const DataObjectIdentifierType &) const

bool	IsIndexedOutputName (const DataObjectIdentifierType &) const

	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))

	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))

	itkLegacyMacro (virtual void RemoveInput(DataObject *input))

	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))

DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const

DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const

DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const

DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const

	ProcessObject ()

virtual void	PropagateResetPipeline ()

virtual void	RemoveInput (const DataObjectIdentifierType &key)

virtual void	RemoveInput (DataObjectPointerArraySizeType)

virtual void	RemoveOutput (const DataObjectIdentifierType &key)

virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)

virtual void	RestoreInputReleaseDataFlags ()

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)

virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)

void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)

void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)

virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)

virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)

virtual void	SetPrimaryInput (DataObject *input)

virtual void	SetPrimaryOutput (DataObject *output)

virtual void	VerifyPreconditions ()

	~ProcessObject ()

DataObject *	GetInput (const DataObjectIdentifierType &key)

const DataObject *	GetInput (const DataObjectIdentifierType &key) const

DataObject *	GetInput (DataObjectPointerArraySizeType idx)

const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryInput ()

const DataObject *	GetPrimaryInput () const

virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryInputName (void) const

virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs ()

bool	AddRequiredInputName (const DataObjectIdentifierType &)

bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

bool	RemoveRequiredInputName (const DataObjectIdentifierType &)

bool	IsRequiredInputName (const DataObjectIdentifierType &) const

void	SetRequiredInputNames (const NameArray &)

DataObject *	GetOutput (const DataObjectIdentifierType &key)

const DataObject *	GetOutput (const DataObjectIdentifierType &key) const

virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryOutputName (void) const

DataObject *	GetOutput (DataObjectPointerArraySizeType idx)

const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryOutput ()

const DataObject *	GetPrimaryOutput () const

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
IdentifierType	m_ElapsedIterations

bool	m_IsInitialized

bool	m_ManualReinitialization

double	m_MaximumRMSError

IdentifierType	m_NumberOfIterations

double	m_RMSChange

Private Member Functions
	FiniteDifferenceImageFilter (const Self &)

void	InitializeFunctionCoefficients ()

void	operator= (const Self &)

Private Attributes
FiniteDifferenceFunctionType::Pointer	m_DifferenceFunction

bool	m_UseImageSpacing

Additional Inherited Members
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) >	InputToOutputRegionCopierType

typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) >	OutputToInputRegionCopierType

Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()

static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)

Member Typedef Documentation

template<class TInputImage, class TOutputImage>

typedef SmartPointer< const Self > itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::ConstPointer

Definition at line 141 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef FiniteDifferenceFunction< TOutputImage > itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::FiniteDifferenceFunctionType

The value type of the time step. This is distinct from PixelType because PixelType may often be a vector value, while the TimeStep is a scalar value.

Definition at line 165 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef TInputImage itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::InputImageType

Input and output image types.

Definition at line 144 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef TInputImage::PixelType itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::InputPixelType

Definition at line 155 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef NumericTraits< InputPixelType >::ValueType itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::InputPixelValueType

Definition at line 160 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef FiniteDifferenceFunctionType::NeighborhoodScalesType itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::NeighborhoodScalesType

Definition at line 169 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef TOutputImage itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::OutputImageType

Definition at line 148 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef TOutputImage::PixelType itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::OutputPixelType

The pixel type of the output image will be used in computations.

Definition at line 154 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef NumericTraits< OutputPixelType >::ValueType itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::OutputPixelValueType

Extract value type in case the pixel is of vector type

Definition at line 159 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef OutputPixelType itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::PixelType

Definition at line 156 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef SmartPointer< Self > itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::Pointer

Definition at line 140 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef FiniteDifferenceFunctionType::RadiusType itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::RadiusType

Definition at line 168 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef FiniteDifferenceImageFilter itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs.

Definition at line 138 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef InPlaceImageFilter< TInputImage, TOutputImage > itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::Superclass

Definition at line 139 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

typedef FiniteDifferenceFunctionType::TimeStepType itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::TimeStepType

Definition at line 166 of file itkFiniteDifferenceImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage, class TOutputImage>

itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::FiniteDifferenceImageFilter ( )

protected

template<class TInputImage, class TOutputImage>

virtual itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::~FiniteDifferenceImageFilter ( )

protectedvirtual

template<class TInputImage, class TOutputImage>

itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::FiniteDifferenceImageFilter ( const Self & )

private

Member Function Documentation

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::AllocateUpdateBuffer ( )

protectedpure virtual

This method allocates a temporary update container in the subclass.

Implemented in itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >, itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >, itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >, itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >, itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >, itk::DiffeomorphicDemonsRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >, itk::FastSymmetricForcesDemonsRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >, itk::DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >, itk::DenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >, itk::FiniteDifferenceSparseImageFilter< TInputImageType, TSparseOutputImageType >, and itk::FiniteDifferenceSparseImageFilter< TInputImage, TSparseOutputImage >.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::ApplyUpdate ( const TimeStepType & dt )

protectedpure virtual

This method is defined by a subclass to apply changes to the output from an update buffer and a time step value "dt".

Parameters

dt	Time step value.

Implemented in itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >, itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >, itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >, itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >, itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >, and itk::FiniteDifferenceSparseImageFilter< TInputImage, TSparseOutputImage >.

template<class TInputImage, class TOutputImage>

virtual TimeStepType itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::CalculateChange ( )

protectedpure virtual

This method is defined by a subclass to populate an update buffer with changes for the pixels in the output. It returns a time step value to be used for the update.

Returns: A time step to use in updating the output with the changes calculated from this method.

Implemented in itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >, itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >, itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >, itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >, itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >, itk::FiniteDifferenceSparseImageFilter< TInputImageType, TSparseOutputImageType >, itk::FiniteDifferenceSparseImageFilter< TInputImage, TSparseOutputImage >, itk::DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >, and itk::DenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::CopyInputToOutput ( )

protectedpure virtual

This method can be defined in subclasses as needed to copy the input to the output. See DenseFiniteDifferenceImageFilter for an implementation.

Implemented in itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >, itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >, itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >, itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >, itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >, itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >, itk::ImplicitManifoldNormalVectorFilter< TInputImage, TSparseOutputImage >, itk::DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >, and itk::DenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::GenerateData ( )

protectedvirtual

This is the default, high-level algorithm for calculating finite difference solutions. It calls virtual methods in its subclasses to implement the major steps of the algorithm.

Reimplemented from itk::ImageSource< TOutputImage >.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::GenerateInputRequestedRegion ( )

protectedvirtual

FiniteDifferenceImageFilter needs a larger input requested region than the output requested region. As such, we need to provide an implementation for GenerateInputRequestedRegion() in order to inform the pipeline execution model.

: The filter will ask for a padded region to perform its neighborhood calculations. If no such region is available, the boundaries will be handled as described in the FiniteDifferenceFunction defined by the subclass.

See Also: ProcessObject::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >, and itk::CurvatureFlowImageFilter< TInputImage, TOutputImage >.

template<class TInputImage, class TOutputImage>

virtual const FiniteDifferenceFunctionType ::Pointer& itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::GetDifferenceFunction ( ) const

virtual

This method returns a pointer to a FiniteDifferenceFunction object that will be used by the filter to calculate updates at image pixels.

Returns: A FiniteDifferenceObject pointer.

template<class TInputImage, class TOutputImage>

virtual const IdentifierType& itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::GetElapsedIterations ( )

virtual

Get the number of elapsed iterations of the filter.

template<class TInputImage, class TOutputImage>

virtual bool itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::GetIsInitialized ( )

virtual

template<class TInputImage, class TOutputImage>

virtual const bool& itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::GetManualReinitialization ( )

virtual

Require the filter to be manually reinitialized (by calling SetStateToUninitialized()

template<class TInputImage, class TOutputImage>

virtual const double& itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::GetMaximumRMSError ( )

virtual

Set/Get the maximum error allowed in the solution. This may not be defined for all solvers and its meaning may change with the application.

template<class TInputImage, class TOutputImage>

virtual const char* itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from itk::InPlaceImageFilter< TInputImage, TOutputImage >.

template<class TInputImage, class TOutputImage>

virtual const IdentifierType& itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::GetNumberOfIterations ( )

virtual

Set/Get the number of iterations that the filter will run.

template<class TInputImage, class TOutputImage>

virtual const double& itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::GetRMSChange ( )

virtual

Set/Get the root mean squared change of the previous iteration. May not be used by all solvers.

template<class TInputImage, class TOutputImage>

virtual const bool& itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::GetUseImageSpacing ( )

virtual

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOn.

template<class TInputImage, class TOutputImage>

virtual bool itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::Halt ( )

protectedvirtual

This method returns true when the current iterative solution of the equation has met the criteria to stop solving. Defined by a subclass.

Reimplemented in itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >, itk::LevelSetMotionRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >, itk::CurvatureFlowImageFilter< TInputImage, TOutputImage >, itk::ImplicitManifoldNormalVectorFilter< TInputImage, TSparseOutputImage >, itk::AnisotropicFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >, itk::IsotropicFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >, and itk::UnsharpMaskLevelSetImageFilter< TInputImage, TOutputImage >.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::Initialize ( void )

inlineprotectedvirtual

This method is optionally defined by a subclass and is called before the loop of iterations of calculate_change & upate. It does the global initialization, i.e. in the SparseFieldLevelSetImageFilter, initialize the list of layers.

Reimplemented in itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >, itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >, itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >, itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >, itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >, itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >, itk::CurvatureRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TImageForceFunction >, itk::ImplicitManifoldNormalVectorFilter< TInputImage, TSparseOutputImage >, itk::FiniteDifferenceSparseImageFilter< TInputImageType, TSparseOutputImageType >, and itk::FiniteDifferenceSparseImageFilter< TInputImage, TSparseOutputImage >.

Definition at line 298 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::InitializeFunctionCoefficients ( )

private

Initialize the values of the Function coefficients. This function will also take care of checking whether the image spacing should be taken into account or not.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::InitializeIteration ( )

inlineprotectedvirtual

This method is optionally defined by a subclass and is called immediately prior to each iterative CalculateChange-ApplyUpdate cycle. It can be used to set global variables needed for the next iteration (ie. average gradient magnitude of the image in anisotropic diffusion functions), or otherwise prepare for the next iteration.

Definition at line 306 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::ManualReinitializationOff ( )

virtual

Require the filter to be manually reinitialized (by calling SetStateToUninitialized()

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::ManualReinitializationOn ( )

virtual

Require the filter to be manually reinitialized (by calling SetStateToUninitialized()

template<class TInputImage, class TOutputImage>

void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::operator= ( const Self & )

private

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::PostProcessOutput ( )

inlineprotectedvirtual

This method is called after the solution has been generated to allow subclasses to apply some further processing to the output.

Reimplemented in itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >, itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >, itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >, itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >, itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >, and itk::ImplicitManifoldNormalVectorFilter< TInputImage, TSparseOutputImage >.

Definition at line 329 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::InPlaceImageFilter< TInputImage, TOutputImage >.

template<class TInputImage, class TOutputImage>

virtual TimeStepType itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::ResolveTimeStep	(	const std::vector< TimeStepType > &	timeStepList,
		const std::vector< bool > &	valid
	)		const

protectedvirtual

Virtual method for resolving a single time step from a set of time steps returned from processing threads.

Returns: Time step (dt) for the iteration update based on a list of time steps generated from the threaded calculated change method (one for each region processed).

Parameters

timeStepList	The set of time changes compiled from all the threaded calls to ThreadedGenerateData.
valid	The set of flags indicating which of "list" elements are valid

The default is to return the minimum value in the list.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::SetDifferenceFunction ( FiniteDifferenceFunctionType * _arg )

virtual

This method sets the pointer to a FiniteDifferenceFunction object that will be used by the filter to calculate updates at image pixels.

Returns: A FiniteDifferenceObject pointer.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::SetElapsedIterations ( IdentifierType _arg )

protectedvirtual

Set the number of elapsed iterations of the filter.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::SetIsInitialized ( bool _arg )

virtual

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::SetManualReinitialization ( bool _arg )

virtual

Require the filter to be manually reinitialized (by calling SetStateToUninitialized()

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::SetMaximumRMSError ( double _arg )

virtual

Set/Get the maximum error allowed in the solution. This may not be defined for all solvers and its meaning may change with the application.

Reimplemented in itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, TOutputImage >, and itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, Image< TOutputPixelType, TInputImage::ImageDimension > >.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::SetNumberOfIterations ( IdentifierType _arg )

virtual

Set/Get the number of iterations that the filter will run.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::SetRMSChange ( double _arg )

virtual

Set/Get the root mean squared change of the previous iteration. May not be used by all solvers.

template<class TInputImage, class TOutputImage>

void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::SetStateToInitialized ( )

inline

Definition at line 220 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::SetStateToUninitialized ( )

inline

Definition at line 219 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::SetUseImageSpacing ( bool _arg )

virtual

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOn.

template<class TInputImage, class TOutputImage>

virtual bool itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::ThreadedHalt ( void * )

inlineprotectedvirtual

This method is similar to Halt(), and its default implementation in this class is simply to call Halt(). However, this method takes as a parameter a void pointer to the MultiThreader::ThreadInfoStruct structure. If you override this method instead of overriding Halt, you will be able to get the current thread ID and handle the Halt method accordingly. This is useful if you are doing a lot of processing in Halt that you don't want parallelized. Notice that ThreadedHalt is only called by the multithreaded filters, so you still should implement Halt, just in case a non-threaded filter is used.

Definition at line 291 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::UseImageSpacingOff ( )

virtual

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOn.

template<class TInputImage, class TOutputImage>

virtual void itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::UseImageSpacingOn ( )

virtual

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOn.

Member Data Documentation

template<class TInputImage, class TOutputImage>

const unsigned int itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::ImageDimension = OutputImageType::ImageDimension

static

Dimensionality of input and output data is assumed to be the same.

Definition at line 151 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

FiniteDifferenceFunctionType::Pointer itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::m_DifferenceFunction

private

The function that will be used in calculating updates for each pixel.

Definition at line 359 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

IdentifierType itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::m_ElapsedIterations

protected

A counter for keeping track of the number of elapsed iterations during filtering.

Definition at line 336 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

bool itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::m_IsInitialized

protected

State that the filter is in, i.e. UNINITIALIZED or INITIALIZED

Definition at line 236 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

bool itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::m_ManualReinitialization

protected

Indicates whether the filter automatically resets to UNINITIALIZED state after completing, or whether filter must be manually reset

Definition at line 340 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

double itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::m_MaximumRMSError

protected

Definition at line 343 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

IdentifierType itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::m_NumberOfIterations

protected

The maximum number of iterations this filter will run

Definition at line 332 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

double itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::m_RMSChange

protected

Definition at line 342 of file itkFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage>

bool itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::m_UseImageSpacing

private

Control whether derivatives use spacing of the input image in its calculation.

Definition at line 356 of file itkFiniteDifferenceImageFilter.h.

The documentation for this class was generated from the following file:

itkFiniteDifferenceImageFilter.h

Detailed Description

template<class TInputImage, class TOutputImage> class itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >

Public Types

Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<class TInputImage, class TOutputImage>
class itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >