itk::LabelOverlapMeasuresImageFilter< TLabelImage > Class Template Reference

#include <itkLabelOverlapMeasuresImageFilter.h>

Inheritance diagram for itk::LabelOverlapMeasuresImageFilter< TLabelImage >:

Collaboration diagram for itk::LabelOverlapMeasuresImageFilter< TLabelImage >:

Detailed Description

template<class TLabelImage>
class itk::LabelOverlapMeasuresImageFilter< TLabelImage >

Computes overlap measures between the set same set of labels of pixels of two images. Background is assumed to be 0.

This code was contributed in the Insight Journal paper: "Introducing Dice, Jaccard, and Other Label Overlap Measures To ITK" by Nicholas J. Tustison, James C. Gee http://hdl.handle.net/10380/3141 http://www.insight-journal.org/browse/publication/707

Author

Nicholas J. Tustison

See Also

LabelOverlapMeasuresImageFilter

Definition at line 45 of file itkLabelOverlapMeasuresImageFilter.h.

Classes
class	LabelSetMeasures

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef TLabelImage::IndexType	IndexType
typedef TLabelImage::ConstPointer	LabelImageConstPointer
typedef TLabelImage::Pointer	LabelImagePointer
typedef TLabelImage	LabelImageType
typedef TLabelImage::PixelType	LabelType
typedef MapType::const_iterator	MapConstIterator
typedef MapType::iterator	MapIterator
typedef itksys::hash_map < LabelType, LabelSetMeasures >	MapType
typedef SmartPointer< Self >	Pointer
typedef NumericTraits < LabelType >::RealType	RealType
typedef TLabelImage::RegionType	RegionType
typedef LabelOverlapMeasuresImageFilter	Self
typedef TLabelImage::SizeType	SizeType
typedef ImageToImageFilter < TLabelImage, TLabelImage >	Superclass
Public Types inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage >
typedef SmartPointer< const Self >	ConstPointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef TLabelImage	InputImageType
typedef Superclass::OutputImagePixelType	OutputImagePixelType
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef SmartPointer< Self >	Pointer
typedef ImageToImageFilter	Self
typedef ImageSource< TLabelImage >	Superclass
Public Types inherited from itk::ImageSource< TLabelImage >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef TLabelImage	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef ImageSource	Self
typedef ProcessObject	Superclass
Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer
typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType
typedef std::vector < DataObjectIdentifierType >	NameArray
typedef SmartPointer< Self >	Pointer
typedef ProcessObject	Self
typedef Object	Superclass
Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef Object	Self
typedef LightObject	Superclass
Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
RealType	GetFalseNegativeError ()
RealType	GetFalseNegativeError (LabelType)
RealType	GetFalsePositiveError ()
RealType	GetFalsePositiveError (LabelType)
MapType	GetLabelSetMeasures ()
RealType	GetMeanOverlap ()
RealType	GetMeanOverlap (LabelType)
virtual const char *	GetNameOfClass () const
const LabelImageType *	GetSourceImage (void)
const LabelImageType *	GetTargetImage (void)
RealType	GetTargetOverlap (LabelType)
RealType	GetTotalOverlap ()
RealType	GetUnionOverlap ()
RealType	GetUnionOverlap (LabelType)
RealType	GetVolumeSimilarity ()
RealType	GetVolumeSimilarity (LabelType)
void	SetSourceImage (const LabelImageType *image)
void	SetTargetImage (const LabelImageType *image)
	typedef (Concept::HasNumericTraits< LabelType >) Input1HasNumericTraitsCheck
RealType	GetJaccardCoefficient ()
RealType	GetJaccardCoefficient (LabelType label)
RealType	GetDiceCoefficient ()
RealType	GetDiceCoefficient (LabelType label)
Public Member Functions inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage >
const InputImageType *	GetInput (void) const
const InputImageType *	GetInput (unsigned int idx) const
virtual void	PopBackInput ()
virtual void	PopFrontInput ()
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
virtual void	SetInput (const InputImageType *image)
virtual void	SetInput (unsigned int, const TLabelImage *image)
virtual void	SetCoordinateTolerance (double _arg)
virtual double	GetCoordinateTolerance () const
virtual void	SetDirectionTolerance (double _arg)
virtual double	GetDirectionTolerance () const
Public Member Functions inherited from itk::ImageSource< TLabelImage >
OutputImageType *	GetOutput (unsigned int idx)
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
virtual void	GraftOutput (DataObject *output)
virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageType *	GetOutput (void)
const OutputImageType *	GetOutput (void) const
virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual const bool &	GetAbortGenerateData ()
NameArray	GetInputNames () const
MultiThreader *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
virtual const float &	GetProgress ()
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	SetProgress (float _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float amount)
DataObjectPointerArray	GetInputs ()
DataObjectPointerArray	GetOutputs ()
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag ()
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads ()
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Attributes
static const unsigned int	ImageDimension = TLabelImage::ImageDimension
Static Public Attributes inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage >
static const unsigned int	InputImageDimension
static const unsigned int	OutputImageDimension
Static Public Attributes inherited from itk::ImageSource< TLabelImage >
static const unsigned int	OutputImageDimension

Protected Member Functions
void	AfterThreadedGenerateData ()
void	AllocateOutputs ()
void	BeforeThreadedGenerateData ()
void	EnlargeOutputRequestedRegion (DataObject *data)
void	GenerateInputRequestedRegion ()
	LabelOverlapMeasuresImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
void	ThreadedGenerateData (const RegionType &, ThreadIdType)
	~LabelOverlapMeasuresImageFilter ()
Protected Member Functions inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
	ImageToImageFilter ()
virtual void	VerifyInputInformation ()
	~ImageToImageFilter ()
void	PushBackInput (const DataObject *input)
void	PushFrontInput (const DataObject *input)
Protected Member Functions inherited from itk::ImageSource< TLabelImage >
virtual void	GenerateData ()
virtual const ImageRegionSplitterBase *	GetImageRegionSplitter (void) const
	ImageSource ()
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual	~ImageSource ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
virtual void	AddOutput (DataObject *output)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs ()
bool	IsIndexedInputName (const DataObjectIdentifierType &) const
bool	IsIndexedOutputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const
DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
virtual void	VerifyPreconditions ()
	~ProcessObject ()
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
DataObject *	GetInput (DataObjectPointerArraySizeType idx)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryInputName (void) const
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs ()
bool	AddRequiredInputName (const DataObjectIdentifierType &)
bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
void	SetRequiredInputNames (const NameArray &)
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryOutputName (void) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Member Functions
	LabelOverlapMeasuresImageFilter (const Self &)
void	operator= (const Self &)

Private Attributes
MapType	m_LabelSetMeasures
std::vector< MapType >	m_LabelSetMeasuresPerThread

Additional Inherited Members
Protected Types inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage >
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) >	InputToOutputRegionCopierType
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) >	OutputToInputRegionCopierType
Static Protected Member Functions inherited from itk::ImageSource< TLabelImage >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime
bool	m_Updating

Member Typedef Documentation

template<class TLabelImage >

typedef SmartPointer<const Self> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::ConstPointer

Definition at line 53 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef TLabelImage::IndexType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::IndexType

Definition at line 68 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef TLabelImage::ConstPointer itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImageConstPointer

Definition at line 64 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef TLabelImage::Pointer itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImagePointer

Definition at line 63 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef TLabelImage itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImageType

Image related typedefs.

Definition at line 59 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef TLabelImage::PixelType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelType

Definition at line 70 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef MapType::const_iterator itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapConstIterator

Definition at line 119 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef MapType::iterator itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapIterator

Definition at line 118 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef itksys::hash_map<LabelType, LabelSetMeasures> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapType

Type of the map used to store data per label

Definition at line 117 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef SmartPointer<Self> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Pointer

Definition at line 52 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef NumericTraits<LabelType>::RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::RealType

Type to use for computations.

Definition at line 73 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef TLabelImage::RegionType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::RegionType

Definition at line 66 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef LabelOverlapMeasuresImageFilter itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Self

Standard Self typedef

Definition at line 50 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef TLabelImage::SizeType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::SizeType

Definition at line 67 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

typedef ImageToImageFilter<TLabelImage,TLabelImage> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Superclass

Definition at line 51 of file itkLabelOverlapMeasuresImageFilter.h.

Constructor & Destructor Documentation

template<class TLabelImage >

itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelOverlapMeasuresImageFilter ( )

protected

End concept checking

template<class TLabelImage >

itk::LabelOverlapMeasuresImageFilter< TLabelImage >::~LabelOverlapMeasuresImageFilter ( )

inlineprotected

Definition at line 187 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelOverlapMeasuresImageFilter ( const Self &  )

private

Member Function Documentation

template<class TLabelImage >

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::AfterThreadedGenerateData ( void  )

protectedvirtual

If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Reimplemented from itk::ImageSource< TLabelImage >.

template<class TLabelImage >

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::AllocateOutputs ( )

protectedvirtual

Pass the input through unmodified. Do this by setting the output to the source this by setting the output to the source image in the AllocateOutputs() method.

Reimplemented from itk::ImageSource< TLabelImage >.

template<class TLabelImage >

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::BeforeThreadedGenerateData ( void  )

protectedvirtual

If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Reimplemented from itk::ImageSource< TLabelImage >.

template<class TLabelImage >

virtual::itk::LightObject::Pointer itk::LabelOverlapMeasuresImageFilter< TLabelImage >::CreateAnother ( void  ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<class TLabelImage >

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::EnlargeOutputRequestedRegion ( DataObject *  )

protectedvirtual

Give the process object a chance to indictate that it will produce more output than it was requested to produce. For example, many imaging filters must compute the entire output at once or can only produce output in complete slices. Such filters cannot handle smaller requested regions. These filters must provide an implementation of this method, setting the output requested region to the size they will produce. By default, a process object does not modify the size of the output requested region.

Reimplemented from itk::ProcessObject.

template<class TLabelImage >

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GenerateInputRequestedRegion ( void  )

protectedvirtual

What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierarchy. Up till now, the base assumption has been that the largest possible region will be requested of the input.

This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.

See Also

ProcessObject::GenerateInputRequestedRegion(), ImageSource::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TLabelImage, TLabelImage >.

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetDiceCoefficient ( )

inline

alternative names

Definition at line 170 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetDiceCoefficient ( LabelType  label )

inline

alternative names

Definition at line 172 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError

(

)

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError

(

LabelType

)

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError

(

)

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError

(

LabelType

)

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetJaccardCoefficient ( )

inline

alternative names

Definition at line 166 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetJaccardCoefficient ( LabelType  label )

inline

alternative names

Definition at line 168 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

MapType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetLabelSetMeasures ( )

inline

Get the label set measures

Definition at line 142 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap

(

)

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap

(

LabelType

)

template<class TLabelImage >

virtual const char* itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetNameOfClass ( ) const

virtual

Runtime information support.

Reimplemented from itk::ImageToImageFilter< TLabelImage, TLabelImage >.

template<class TLabelImage >

const LabelImageType* itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetSourceImage ( void  )

inline

Get the source image.

Definition at line 134 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

const LabelImageType* itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTargetImage ( void  )

inline

Get the target image.

Definition at line 138 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTargetOverlap

(

LabelType

)

measures over individual labels

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTotalOverlap

(

)

tric overlap measuresmeasures over all labels

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap

(

)

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap

(

LabelType

)

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity

(

)

template<class TLabelImage >

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity

(

LabelType

)

template<class TLabelImage >

static Pointer itk::LabelOverlapMeasuresImageFilter< TLabelImage >::New ( )

static

Method for creation through the object factory.

template<class TLabelImage >

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::operator= ( const Self &  )

private

template<class TLabelImage >

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TLabelImage, TLabelImage >.

template<class TLabelImage >

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::SetSourceImage ( const LabelImageType *  image )

inline

Set the source image.

Definition at line 126 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::SetTargetImage ( const LabelImageType *  image )

inline

Set the target image.

Definition at line 130 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::ThreadedGenerateData ( const RegionType &  , ThreadIdType    )

protected

Multi-thread version GenerateData.

template<class TLabelImage >

itk::LabelOverlapMeasuresImageFilter< TLabelImage >::typedef

(

Concept::HasNumericTraits< LabelType >

)

Begin concept checking This class requires Input1HasNumericTraitsCheck in the form of ( Concept::HasNumericTraits<LabelType> )

Member Data Documentation

template<class TLabelImage >

const unsigned int itk::LabelOverlapMeasuresImageFilter< TLabelImage >::ImageDimension = TLabelImage::ImageDimension

static

Image related typedefs.

Definition at line 123 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

MapType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::m_LabelSetMeasures

private

Definition at line 215 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >

std::vector<MapType> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::m_LabelSetMeasuresPerThread

private

Definition at line 214 of file itkLabelOverlapMeasuresImageFilter.h.

---

The documentation for this class was generated from the following file:

• itkLabelOverlapMeasuresImageFilter.h