#include <itkMIRegistrationFunction.h>

Inheritance diagram for itk::MIRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >:

Collaboration diagram for itk::MIRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >:

Detailed Description

template<class TFixedImage, class TMovingImage, class TDisplacementField>
class itk::MIRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >

This class encapsulates a mutual information force for deformable registration algorithms. It is used by a RegistrationFilter to compute the output displacement field which will map a moving image onto a a fixed image.

Non-integer moving image values are obtained by using interpolation. The default interpolator is of type LinearInterpolateImageFunction. The user may set other interpolators via method SetMovingImageInterpolator. Note that the input interpolator must derive from baseclass InterpolateImageFunction.

This class is templated over the fixed image type, moving image type, and the displacement field type.

Warning: This filter assumes that the fixed image type, moving image type and displacement field type all have the same number of dimensions.

See Also: MIRegistrationFilter

Definition at line 53 of file itkMIRegistrationFunction.h.

Classes
struct	GlobalDataStruct

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef double	CoordRepType

typedef CovariantVector < double, itkGetStaticConstMacro(ImageDimension) >	CovariantVectorType

typedef LinearInterpolateImageFunction < MovingImageType, CoordRepType >	DefaultInterpolatorType

typedef Superclass::DisplacementFieldType	DisplacementFieldType

typedef Superclass::DisplacementFieldTypePointer	DisplacementFieldTypePointer

typedef Superclass::FixedImagePointer	FixedImagePointer

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::FloatOffsetType	FloatOffsetType

typedef GradientCalculatorType::Pointer	GradientCalculatorPointer

typedef CentralDifferenceImageFunction < FixedImageType >	GradientCalculatorType

typedef FixedImageType::IndexType	IndexType

typedef InterpolatorType::Pointer	InterpolatorPointer

typedef InterpolateImageFunction < MovingImageType, CoordRepType >	InterpolatorType

typedef Superclass::MovingImagePointer	MovingImagePointer

typedef Superclass::MovingImageType	MovingImageType

typedef Superclass::NeighborhoodType	NeighborhoodType

typedef Superclass::PixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef InterpolatorType::PointType	PointType

typedef Superclass::RadiusType	RadiusType

typedef MIRegistrationFunction	Self

typedef FixedImageType::SizeType	SizeType

typedef FixedImageType::SpacingType	SpacingType

typedef PDEDeformableRegistrationFunction < TFixedImage, TMovingImage, TDisplacementField >	Superclass

typedef Superclass::TimeStepType	TimeStepType

Public Types inherited from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >
typedef SmartPointer< const Self >	ConstPointer

typedef TDisplacementField	DisplacementFieldType

typedef DisplacementFieldType::Pointer	DisplacementFieldTypePointer

typedef FixedImageType::ConstPointer	FixedImagePointer

typedef TFixedImage	FixedImageType

typedef MovingImageType::ConstPointer	MovingImagePointer

typedef TMovingImage	MovingImageType

typedef SmartPointer< Self >	Pointer

typedef PDEDeformableRegistrationFunction	Self

typedef FiniteDifferenceFunction < TDisplacementField >	Superclass

Public Types inherited from itk::FiniteDifferenceFunction< TDisplacementField >
typedef SmartPointer< const Self >	ConstPointer

typedef ZeroFluxNeumannBoundaryCondition < ImageType >	DefaultBoundaryConditionType

typedef Vector< float, itkGetStaticConstMacro(ImageDimension) >	FloatOffsetType

typedef TDisplacementField	ImageType

typedef Vector< PixelRealType, itkGetStaticConstMacro(ImageDimension) >	NeighborhoodScalesType

typedef ConstNeighborhoodIterator < TDisplacementField, DefaultBoundaryConditionType >	NeighborhoodType

typedef double	PixelRealType

typedef ImageType::PixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef ConstNeighborhoodIterator < TDisplacementField > ::RadiusType	RadiusType

typedef FiniteDifferenceFunction	Self

typedef LightObject	Superclass

typedef double	TimeStepType

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual TimeStepType	ComputeGlobalTimeStep (void *) const

virtual PixelType	ComputeUpdate (const NeighborhoodType &neighborhood, void *globalData, const FloatOffsetType &offset=FloatOffsetType(0.0))

virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual void *	GetGlobalDataPointer () const

InterpolatorType *	GetMovingImageInterpolator (void)

virtual const char *	GetNameOfClass () const

virtual void	InitializeIteration ()

virtual void	ReleaseGlobalDataPointer (void *GlobalData) const

void	SetDoInverse (bool b=false)

void	SetMinNorm (float ts=1.0)

void	SetMovingImageInterpolator (InterpolatorType *ptr)

Public Member Functions inherited from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >
DisplacementFieldType *	GetDisplacementField (void)

double	GetEnergy () const

const FixedImageType *	GetFixedImage (void) const

double	GetGradientStep () const

const MovingImageType *	GetMovingImage (void) const

bool	GetNormalizeGradient () const

void	SetDisplacementField (DisplacementFieldTypePointer ptr)

void	SetEnergy (double e)

void	SetFixedImage (const FixedImageType *ptr)

void	SetGradientStep (double e)

void	SetMovingImage (const MovingImageType *ptr)

void	SetNormalizeGradient (bool e)

Public Member Functions inherited from itk::FiniteDifferenceFunction< TDisplacementField >
const NeighborhoodScalesType	ComputeNeighborhoodScales () const

const RadiusType &	GetRadius () const

void	GetScaleCoefficients (PixelRealType vals[ImageDimension]) const

void	SetRadius (const RadiusType &r)

void	SetScaleCoefficients (PixelRealType vals[ImageDimension])

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

virtual void	Register () const

virtual void	SetReferenceCount (int)

virtual void	UnRegister () const

Static Public Member Functions
static Pointer	New ()

Static Public Attributes
static const unsigned int	ImageDimension = Superclass::ImageDimension

Protected Types
typedef ConstNeighborhoodIterator < FixedImageType >	FixedImageNeighborhoodIteratorType

Protected Member Functions
	MIRegistrationFunction ()

void	PrintSelf (std::ostream &os, Indent indent) const

	~MIRegistrationFunction ()

Protected Member Functions inherited from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >
	PDEDeformableRegistrationFunction ()

	~PDEDeformableRegistrationFunction ()

Protected Member Functions inherited from itk::FiniteDifferenceFunction< TDisplacementField >
	FiniteDifferenceFunction ()

void	PrintSelf (std::ostream &os, Indent indent) const

	~FiniteDifferenceFunction ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
TimeStepType	m_TimeStep

Protected Attributes inherited from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >
DisplacementFieldTypePointer	m_DisplacementField

double	m_Energy

FixedImagePointer	m_FixedImage

double	m_GradientStep

MovingImagePointer	m_MovingImage

bool	m_NormalizeGradient

Protected Attributes inherited from itk::FiniteDifferenceFunction< TDisplacementField >
RadiusType	m_Radius

PixelRealType	m_ScaleCoefficients [ImageDimension]

Protected Attributes inherited from itk::LightObject
InternalReferenceCountType	m_ReferenceCount

SimpleFastMutexLock	m_ReferenceCountLock

Private Member Functions
	MIRegistrationFunction (const Self &)

void	operator= (const Self &)

Private Attributes
double	m_DenominatorThreshold

bool	m_DoInverse

GradientCalculatorPointer	m_FixedImageGradientCalculator

PointType	m_FixedImageOrigin

SpacingType	m_FixedImageSpacing

double	m_IntensityDifferenceThreshold

double	m_MetricTotal

float	m_Minnorm

GradientCalculatorPointer	m_MovingImageGradientCalculator

InterpolatorPointer	m_MovingImageInterpolator

unsigned int	m_NumberOfBins

unsigned int	m_NumberOfSamples