#include <itkRegionBasedLevelSetFunction.h>

Inheritance diagram for itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >:

Collaboration diagram for itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >:

Detailed Description

template<class TInput, class TFeature, class TSharedData>
class itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >

LevelSet function that computes a speed image based on regional integrals.

This class implements a level set function that computes the speed image by integrating values on the image domain.

Based on the paper:

   "An active contour model without edges"
    T. Chan and L. Vese.
    In Scale-Space Theories in Computer Vision, pages 141-151, 1999.

Author: Mosaliganti K., Smith B., Gelas A., Gouaillard A., Megason S.

This code was taken from the Insight Journal paper:

"Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
http://www.insight-journal.org/browse/publication/642
http://hdl.handle.net/10380/3055

That is based on the papers:

"Level Set Segmentation: Active Contours without edge"
http://www.insight-journal.org/browse/publication/322
http://hdl.handle.net/1926/1532

and

"Level set segmentation using coupled active surfaces"
http://www.insight-journal.org/browse/publication/323
http://hdl.handle.net/1926/1533

NOTE: The convention followed is inside of the level-set function is negative and outside is positive.

Definition at line 67 of file itkRegionBasedLevelSetFunction.h.

Classes
struct	GlobalDataStruct

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef FeatureImageType::ConstPointer	FeatureImageConstPointer

typedef TFeature	FeatureImageType

typedef FeatureImageType::IndexType	FeatureIndexType

typedef FeatureImageType::OffsetType	FeatureOffsetType

typedef FeatureImageType::PixelType	FeaturePixelType

typedef FeatureImageType::SpacingType	FeatureSpacingType

typedef Superclass::FloatOffsetType	FloatOffsetType

typedef HeavisideFunctionType::ConstPointer	HeavisideFunctionConstPointer

typedef HeavisideStepFunctionBase < InputPixelType, InputPixelType >	HeavisideFunctionType

typedef Superclass::ImageType	ImageType

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::Pointer	InputImagePointer

typedef TInput	InputImageType

typedef InputImageType::IndexType	InputIndexType

typedef InputImageType::IndexValueType	InputIndexValueType

typedef InputImageType::PixelType	InputPixelType

typedef InputImageType::PointType	InputPointType

typedef InputImageType::RegionType	InputRegionType

typedef InputImageType::SizeType	InputSizeType

typedef InputImageType::SizeValueType	InputSizeValueType

typedef Superclass::NeighborhoodScalesType	NeighborhoodScalesType

typedef Superclass::NeighborhoodType	NeighborhoodType

typedef Superclass::PixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RadiusType	RadiusType

typedef PixelType	ScalarValueType

typedef RegionBasedLevelSetFunction	Self

typedef SharedDataType::Pointer	SharedDataPointer

typedef TSharedData	SharedDataType

typedef FiniteDifferenceFunction < TInput >	Superclass

typedef double	TimeStepType

typedef FixedArray < ScalarValueType, itkGetStaticConstMacro(ImageDimension) >	VectorType

Public Types inherited from itk::FiniteDifferenceFunction< TInput >
typedef SmartPointer< const Self >	ConstPointer

typedef ZeroFluxNeumannBoundaryCondition < ImageType >	DefaultBoundaryConditionType

typedef Vector< float, itkGetStaticConstMacro(ImageDimension) >	FloatOffsetType

typedef TInput	ImageType

typedef Vector< PixelRealType, itkGetStaticConstMacro(ImageDimension) >	NeighborhoodScalesType

typedef ConstNeighborhoodIterator < TInput, DefaultBoundaryConditionType >	NeighborhoodType

typedef double	PixelRealType

typedef ImageType::PixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef ConstNeighborhoodIterator < TInput >::RadiusType	RadiusType

typedef FiniteDifferenceFunction	Self

typedef LightObject	Superclass

typedef double	TimeStepType

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual VectorType	AdvectionField (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const

virtual void	CalculateAdvectionImage ()

virtual ScalarValueType	ComputeCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd)

TimeStepType	ComputeGlobalTimeStep (void *GlobalData) const

virtual PixelType	ComputeUpdate (const NeighborhoodType &neighborhood, void *globalData, const FloatOffsetType &=FloatOffsetType(0.0))

virtual ScalarValueType	CurvatureSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const

ScalarValueType	GetAdvectionWeight () const

virtual const FeatureImageType *	GetFeatureImage () const

void *	GetGlobalDataPointer () const

virtual const char *	GetNameOfClass () const

virtual void	Initialize (const RadiusType &r)

virtual ScalarValueType	LaplacianSmoothingSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const

virtual void	ReleaseGlobalDataPointer (void *GlobalData) const

void	SetAdvectionWeight (const ScalarValueType &iA)

void	SetDomainFunction (const HeavisideFunctionType *f)

virtual void	SetFeatureImage (const FeatureImageType *f)

void	SetFunctionId (const unsigned int &iFid)

void	SetInitialImage (InputImageType *f)

void	SetSharedData (SharedDataPointer sharedDataIn)

void	UpdateSharedData (bool forceUpdate)


void	SetAreaWeight (const ScalarValueType &nu)

ScalarValueType	GetAreaWeight () const


void	SetLambda1 (const ScalarValueType &lambda1)

ScalarValueType	GetLambda1 () const


void	SetLambda2 (const ScalarValueType &lambda2)

ScalarValueType	GetLambda2 () const


void	SetOverlapPenaltyWeight (const ScalarValueType &gamma)

ScalarValueType	GetOverlapPenaltyWeight () const


virtual void	SetCurvatureWeight (const ScalarValueType c)

ScalarValueType	GetCurvatureWeight () const


void	SetReinitializationSmoothingWeight (const ScalarValueType c)

ScalarValueType	GetReinitializationSmoothingWeight () const


void	SetVolumeMatchingWeight (const ScalarValueType &tau)

ScalarValueType	GetVolumeMatchingWeight () const


void	SetVolume (const ScalarValueType &volume)

ScalarValueType	GetVolume () const

Public Member Functions inherited from itk::FiniteDifferenceFunction< TInput >
const NeighborhoodScalesType	ComputeNeighborhoodScales () const

const RadiusType &	GetRadius () const

void	GetScaleCoefficients (PixelRealType vals[ImageDimension]) const

virtual void	InitializeIteration ()

void	SetRadius (const RadiusType &r)

void	SetScaleCoefficients (PixelRealType vals[ImageDimension])

Public Member Functions inherited from itk::LightObject
virtual Pointer	CreateAnother () const

virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

virtual void	Register () const

virtual void	SetReferenceCount (int)

virtual void	UnRegister () const

Static Public Attributes
static const unsigned int	ImageDimension = Superclass::ImageDimension

Static Public Attributes inherited from itk::FiniteDifferenceFunction< TInput >
static const unsigned int	ImageDimension

Protected Member Functions
virtual ScalarValueType	ComputeExternalTerm (const FeaturePixelType &iValue, const FeatureIndexType &iIdx)=0

ScalarValueType	ComputeGlobalTerm (const ScalarValueType &imagePixel, const InputIndexType &inputIndex)

void	ComputeHessian (const NeighborhoodType &it, GlobalDataStruct *globalData)

void	ComputeHImage ()

virtual ScalarValueType	ComputeInternalTerm (const FeaturePixelType &iValue, const FeatureIndexType &iIdx)=0

ScalarValueType	ComputeLaplacian (GlobalDataStruct *gd)

virtual ScalarValueType	ComputeOverlapParameters (const FeatureIndexType &featIndex, ScalarValueType &pr)=0

virtual void	ComputeParameters ()=0

ScalarValueType	ComputeVolumeRegularizationTerm ()

	RegionBasedLevelSetFunction ()

virtual void	UpdateSharedDataParameters ()=0

virtual	~RegionBasedLevelSetFunction ()

Protected Member Functions inherited from itk::FiniteDifferenceFunction< TInput >
	FiniteDifferenceFunction ()

void	PrintSelf (std::ostream &os, Indent indent) const

	~FiniteDifferenceFunction ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Static Protected Member Functions
static VectorType	InitializeZeroVectorConstant ()

Protected Attributes
ScalarValueType	m_AdvectionWeight

ScalarValueType	m_AreaWeight

OffsetValueType	m_Center

ScalarValueType	m_CurvatureWeight

HeavisideFunctionConstPointer	m_DomainFunction

FeatureImageConstPointer	m_FeatureImage

unsigned int	m_FunctionId

InputImageConstPointer	m_InitialImage

double	m_InvSpacing [itkGetStaticConstMacro(ImageDimension)]

ScalarValueType	m_Lambda1

ScalarValueType	m_Lambda2

ScalarValueType	m_OverlapPenaltyWeight

ScalarValueType	m_ReinitializationSmoothingWeight

SharedDataPointer	m_SharedData

bool	m_UpdateC

ScalarValueType	m_Volume

ScalarValueType	m_VolumeMatchingWeight

OffsetValueType	m_xStride [itkGetStaticConstMacro(ImageDimension)]

std::slice	x_slice [itkGetStaticConstMacro(ImageDimension)]

Protected Attributes inherited from itk::FiniteDifferenceFunction< TInput >
RadiusType	m_Radius

PixelRealType	m_ScaleCoefficients [ImageDimension]

Protected Attributes inherited from itk::LightObject
InternalReferenceCountType	m_ReferenceCount

SimpleFastMutexLock	m_ReferenceCountLock

Static Protected Attributes
static double	m_DT

static double	m_WaveDT

static VectorType	m_ZeroVectorConstant

Private Member Functions
void	operator= (const Self &)

	RegionBasedLevelSetFunction (const Self &)

Additional Inherited Members
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Protected Types inherited from itk::LightObject
typedef int	InternalReferenceCountType

Member Typedef Documentation

template<class TInput, class TFeature, class TSharedData>

typedef SmartPointer< const Self > itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ConstPointer

Definition at line 75 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef FeatureImageType::ConstPointer itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::FeatureImageConstPointer

Definition at line 139 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef TFeature itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::FeatureImageType

Definition at line 138 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef FeatureImageType::IndexType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::FeatureIndexType

Definition at line 141 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef FeatureImageType::OffsetType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::FeatureOffsetType

Definition at line 143 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef FeatureImageType::PixelType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::FeaturePixelType

Definition at line 140 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef FeatureImageType::SpacingType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::FeatureSpacingType

Definition at line 142 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef Superclass::FloatOffsetType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::FloatOffsetType

Definition at line 92 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef HeavisideFunctionType::ConstPointer itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::HeavisideFunctionConstPointer

Definition at line 149 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef HeavisideStepFunctionBase< InputPixelType, InputPixelType > itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::HeavisideFunctionType

Definition at line 148 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef Superclass::ImageType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ImageType

Definition at line 86 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef InputImageType::ConstPointer itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::InputImageConstPointer

Definition at line 128 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef InputImageType::Pointer itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::InputImagePointer

Definition at line 129 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef TInput itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::InputImageType

Definition at line 127 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef InputImageType::IndexType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::InputIndexType

Definition at line 131 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef InputImageType::IndexValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::InputIndexValueType

Definition at line 132 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef InputImageType::PixelType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::InputPixelType

Definition at line 130 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef InputImageType::PointType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::InputPointType

Definition at line 136 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef InputImageType::RegionType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::InputRegionType

Definition at line 135 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef InputImageType::SizeType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::InputSizeType

Definition at line 133 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef InputImageType::SizeValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::InputSizeValueType

Definition at line 134 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef Superclass::NeighborhoodScalesType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::NeighborhoodScalesType

Definition at line 91 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef Superclass::NeighborhoodType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::NeighborhoodType

Definition at line 90 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef Superclass::PixelType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::PixelType

Definition at line 87 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef SmartPointer< Self > itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::Pointer

Definition at line 74 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef Superclass::RadiusType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::RadiusType

Definition at line 89 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef PixelType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ScalarValueType

Definition at line 88 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef RegionBasedLevelSetFunction itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::Self

Standard class typedefs.

Definition at line 72 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef SharedDataType::Pointer itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SharedDataPointer

Definition at line 146 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef TSharedData itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SharedDataType

Definition at line 145 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef FiniteDifferenceFunction< TInput > itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::Superclass

Definition at line 73 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef double itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::TimeStepType

Extract some parameters from the superclass.

Definition at line 82 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

typedef FixedArray< ScalarValueType, itkGetStaticConstMacro(ImageDimension) > itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::VectorType

Definition at line 94 of file itkRegionBasedLevelSetFunction.h.

Constructor & Destructor Documentation

template<class TInput, class TFeature, class TSharedData>

itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::RegionBasedLevelSetFunction ( )

protected

template<class TInput, class TFeature, class TSharedData>

virtual itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::~RegionBasedLevelSetFunction ( )

inlineprotectedvirtual

Definition at line 311 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::RegionBasedLevelSetFunction ( const Self & )

private

Member Function Documentation

template<class TInput, class TFeature, class TSharedData>

virtual VectorType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::AdvectionField	(	const NeighborhoodType &	,
		const FloatOffsetType &	,
		GlobalDataStruct *	= `0`
	)		const

inlinevirtual

Advection field. Default implementation returns a vector of zeros.

Definition at line 213 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

virtual void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::CalculateAdvectionImage ( )

inlinevirtual

This method must be defined in a subclass to implement a working function object. This method is called before the solver begins its work to produce the speed image used as the level set function's Advection field term. See LevelSetFunction for more information.

Definition at line 306 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

virtual ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ComputeCurvature	(	const NeighborhoodType &	,
		const FloatOffsetType &	,
		GlobalDataStruct *	gd
	)

virtual

template<class TInput, class TFeature, class TSharedData>

virtual ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ComputeExternalTerm	(	const FeaturePixelType &	iValue,
		const FeatureIndexType &	iIdx
	)

protectedpure virtual

Compute the external term.

Parameters

[in]	iValue	Feature Image Value
[in]	iIdx	Feature Image Index

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ComputeGlobalTerm	(	const ScalarValueType &	imagePixel,
		const InputIndexType &	inputIndex
	)

protected

Compute the global term as a combination of the internal, external, overlapping and volume regularization terms.

template<class TInput, class TFeature, class TSharedData>

TimeStepType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ComputeGlobalTimeStep ( void * GlobalData ) const

virtual

Computes the time step for an update given a global data structure. The data used in the computation may take different forms depending on the nature of the equations. This global data cannot be kept in the instance of the equation object itself since the equation object must remain stateless for thread safety. The global data is therefore managed for each thread by the finite difference solver filters.

Implements itk::FiniteDifferenceFunction< TInput >.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ComputeHessian	(	const NeighborhoodType &	it,
		GlobalDataStruct *	globalData
	)

protected

Compute Hessian Matrix.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ComputeHImage ( )

protected

template<class TInput, class TFeature, class TSharedData>

virtual ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ComputeInternalTerm	(	const FeaturePixelType &	iValue,
		const FeatureIndexType &	iIdx
	)

protectedpure virtual

Compute the internal term.

Parameters

[in]	iValue	Feature Image Value
[in]	iIdx	Feature Image Index

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ComputeLaplacian ( GlobalDataStruct * gd )

protected

Compute the laplacian term.

Returns: $\Delta \phi - \div(\frac{\nabla \phi}{|\nabla \phi|})$ For details see

REFERENCE: Li, C.M. and Xu, C.Y. and Gui, C. and Fox, M.D. "Level Set Evolution without Re-Initialization: A New Variational Formulation", CVPR05. 2005. pp. 430-436.Compute the laplacian

Returns: $\Delta \phi$

template<class TInput, class TFeature, class TSharedData>

virtual ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ComputeOverlapParameters	(	const FeatureIndexType &	featIndex,
		ScalarValueType &	pr
	)

protectedpure virtual

Compute the overlap term.

Parameters

[in]	featIndex
[out]	pr	= $\prod_{i \neq j} H(\phi_i)$

Returns: OverlapTerm = $\sum_{i \neq j} H(\phi_i)$

template<class TInput, class TFeature, class TSharedData>

virtual void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ComputeParameters ( )

protectedpure virtual

Compute Parameters for the inner and outer parts.

Implemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

template<class TInput, class TFeature, class TSharedData>

virtual PixelType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ComputeUpdate	(	const NeighborhoodType &	neighborhood,
		void *	globalData,
		const FloatOffsetType &	= `FloatOffsetType(0.0)`
	)

virtual

Compute the equation value.

Implements itk::FiniteDifferenceFunction< TInput >.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ComputeVolumeRegularizationTerm ( )

protected

Compute the overlap term.

Returns: $\int_{p \in \Omega} H(\phi_i) dp - this->Volume$

Note: the volume regularization does not depend on the spacing. So the volume must be set in number of pixels (not in real world unit).

template<class TInput, class TFeature, class TSharedData>

virtual ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::CurvatureSpeed	(	const NeighborhoodType &	,
		const FloatOffsetType &	,
		GlobalDataStruct *	= `0`
	)		const

inlinevirtual

Curvature speed can be used to spatially modify the effects of curvature . The default implementation returns one.

Definition at line 297 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::GetAdvectionWeight ( ) const

inline

Definition at line 254 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::GetAreaWeight ( ) const

inline

Nu. Area regularization values

Definition at line 220 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::GetCurvatureWeight ( ) const

inline

Gamma. Scales all curvature weight values

Definition at line 248 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

virtual const FeatureImageType* itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::GetFeatureImage ( ) const

inlinevirtual

Definition at line 199 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void* itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::GetGlobalDataPointer ( ) const

inlinevirtual

Returns a pointer to a global data structure that is passed to this object from the solver at each calculation. The idea is that the solver holds the state of any global values needed to calculate the time step, while the equation object performs the actual calculations.

The global data should also be initialized in this method.

Implements itk::FiniteDifferenceFunction< TInput >.

Definition at line 183 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::GetLambda1 ( ) const

inline

Lambda1. Internal intensity difference weight

Definition at line 227 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::GetLambda2 ( ) const

inline

Lambda2. External intensity difference weight

Definition at line 234 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

virtual const char* itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from itk::FiniteDifferenceFunction< TInput >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >, and itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::GetOverlapPenaltyWeight ( ) const

inline

Gamma. Overlap penalty

Definition at line 241 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::GetReinitializationSmoothingWeight ( ) const

inline

Weight of the laplacian smoothing term

Definition at line 260 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::GetVolume ( ) const

inline

Pixel Volume = Number of pixels inside the level-set

Definition at line 274 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::GetVolumeMatchingWeight ( ) const

inline

Volume matching weight.

Definition at line 267 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

virtual void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::Initialize ( const RadiusType & r )

inlinevirtual

Definition at line 156 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

static VectorType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::InitializeZeroVectorConstant ( )

staticprotected

This method's only purpose is to initialize the zero vector constant.

template<class TInput, class TFeature, class TSharedData>

virtual ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::LaplacianSmoothingSpeed	(	const NeighborhoodType &	,
		const FloatOffsetType &	,
		GlobalDataStruct *	= `0`
	)		const

inlinevirtual

Laplacian smoothing speed can be used to spatially modify the effects of laplacian smoothing of the level set function.

Definition at line 290 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::operator= ( const Self & )

private

template<class TInput, class TFeature, class TSharedData>

virtual void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ReleaseGlobalDataPointer ( void * GlobalData ) const

inlinevirtual

When the finite difference solver filter has finished using a global data pointer, it passes it to this method, which frees the memory.

The solver cannot free the memory because it does not know the type to which the pointer points.

Implements itk::FiniteDifferenceFunction< TInput >.

Definition at line 282 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetAdvectionWeight ( const ScalarValueType & iA )

inline

Definition at line 252 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetAreaWeight ( const ScalarValueType & nu )

inline

Nu. Area regularization values

Definition at line 218 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

virtual void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetCurvatureWeight ( const ScalarValueType c )

inlinevirtual

Gamma. Scales all curvature weight values

Definition at line 246 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetDomainFunction ( const HeavisideFunctionType * f )

inline

Definition at line 151 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

virtual void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetFeatureImage ( const FeatureImageType * f )

inlinevirtual

Definition at line 201 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetFunctionId ( const unsigned int & iFid )

inline

Set function id.

Definition at line 279 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetInitialImage ( InputImageType * f )

inline

Definition at line 194 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetLambda1 ( const ScalarValueType & lambda1 )

inline

Lambda1. Internal intensity difference weight

Definition at line 225 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetLambda2 ( const ScalarValueType & lambda2 )

inline

Lambda2. External intensity difference weight

Definition at line 232 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetOverlapPenaltyWeight ( const ScalarValueType & gamma )

inline

Gamma. Overlap penalty

Definition at line 239 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetReinitializationSmoothingWeight ( const ScalarValueType c )

inline

Weight of the laplacian smoothing term

Definition at line 258 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetSharedData ( SharedDataPointer sharedDataIn )

inline

Definition at line 175 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetVolume ( const ScalarValueType & volume )

inline

Pixel Volume = Number of pixels inside the level-set

Definition at line 272 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::SetVolumeMatchingWeight ( const ScalarValueType & tau )

inline

Volume matching weight.

Definition at line 265 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::UpdateSharedData ( bool forceUpdate )

template<class TInput, class TFeature, class TSharedData>

virtual void itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::UpdateSharedDataParameters ( )

protectedpure virtual

Update and save the inner and outer parameters in the shared data structure.

Implemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Member Data Documentation

template<class TInput, class TFeature, class TSharedData>

const unsigned int itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::ImageDimension = Superclass::ImageDimension

static

Definition at line 77 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_AdvectionWeight

protected

Definition at line 344 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_AreaWeight

protected

Area regularization weight

Definition at line 324 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

OffsetValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_Center

protected

Definition at line 352 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_CurvatureWeight

protected

Curvature Regularization Weight

Definition at line 342 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

HeavisideFunctionConstPointer itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_DomainFunction

protected

Definition at line 321 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

double itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_DT

staticprotected

Definition at line 357 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

FeatureImageConstPointer itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_FeatureImage

protected

The feature image

Definition at line 317 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

unsigned int itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_FunctionId

protected

Definition at line 349 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

InputImageConstPointer itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_InitialImage

protected

The initial level set image

Definition at line 314 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

double itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_InvSpacing[itkGetStaticConstMacro(ImageDimension)]

protected

Definition at line 354 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_Lambda1

protected

Internal functional of the level set weight

Definition at line 327 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_Lambda2

protected

External functional of the level set weight

Definition at line 330 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_OverlapPenaltyWeight

protected

Overlap Penalty Weight

Definition at line 333 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_ReinitializationSmoothingWeight

protected

Laplacian Regularization Weight

Definition at line 347 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

SharedDataPointer itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_SharedData

protected

Definition at line 319 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

bool itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_UpdateC

protected

Definition at line 418 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_Volume

protected

Volume Constraint in pixels

Definition at line 339 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

ScalarValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_VolumeMatchingWeight

protected

Volume Regularization Weight

Definition at line 336 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

double itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_WaveDT

staticprotected

Definition at line 356 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

OffsetValueType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_xStride[itkGetStaticConstMacro(ImageDimension)]

protected

Definition at line 353 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

VectorType itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::m_ZeroVectorConstant

staticprotected

Zero vector constant.

Definition at line 425 of file itkRegionBasedLevelSetFunction.h.

template<class TInput, class TFeature, class TSharedData>

std::slice itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >::x_slice[itkGetStaticConstMacro(ImageDimension)]

protected

Definition at line 351 of file itkRegionBasedLevelSetFunction.h.

The documentation for this class was generated from the following file:

itkRegionBasedLevelSetFunction.h

Detailed Description

template<class TInput, class TFeature, class TSharedData> class itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >

Classes

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Protected Member Functions

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Static Protected Attributes

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Member Function Documentation

Member Data Documentation

template<class TInput, class TFeature, class TSharedData>
class itk::RegionBasedLevelSetFunction< TInput, TFeature, TSharedData >