#include <itkScalarImageToTextureFeaturesFilter.h>

Inheritance diagram for itk::Statistics::ScalarImageToTextureFeaturesFilter< TImageType, THistogramFrequencyContainer >:

Collaboration diagram for itk::Statistics::ScalarImageToTextureFeaturesFilter< TImageType, THistogramFrequencyContainer >:

Detailed Description

template<class TImageType, class THistogramFrequencyContainer = DenseFrequencyContainer2>
class itk::Statistics::ScalarImageToTextureFeaturesFilter< TImageType, THistogramFrequencyContainer >

This class computes texture descriptions from an image.

This class computes features that summarize the texture of a given image. The texture features are computed a la Haralick, and have proven to be useful in image classification for biological and medical imaging. This class computes the texture features of an image (optionally in a masked region), averaged across several spatial directions so that they are invariant to rotation.

By default, texure features are computed for each spatial direction and then averaged afterward, so it is possible to access the standard deviations of the texture features. These values give a clue as to texture anisotropy. However, doing this is much more work, because it involved computing one GLCM for each offset given. To compute a single GLCM using the first offset , call FastCalculationsOn(). If this is called, then the texture standard deviations will not be computed (and will be set to zero), but texture computation will be much faster.

This class is templated over the input image type.

Template Parameters: The image type, and the type of histogram frequency container. If you are using a large number of bins per axis, a sparse frequency container may be advisable. The default is to use a dense frequency container.

Inputs and parameters:

An image
A mask defining the region over which texture features will be calculated. (Optional)
The pixel value that defines the "inside" of the mask. (Optional, defaults to 1 if a mask is set.)
The set of features to be calculated. These features are defined in the GreyLevelCooccurrenceMatrixTextureCoefficientsCalculator class. (Optional, defaults to {Energy, Entropy, InverseDifferenceMoment, Inertia, ClusterShade, ClusterProminence}, as in Conners, Trivedi and Harlow.)
The number of intensity bins. (Optional, defaults to 256.)
The set of directions (offsets) to average across. (Optional, defaults to {(-1, 0), (-1, -1), (0, -1), (1, -1)} for 2D images and scales analogously for ND images.)
The pixel intensity range over which the features will be calculated. (Optional, defaults to the full dynamic range of the pixel type.)

In general, the default parameter values should be sufficient.

Outputs: (1) The average value of each feature. (2) The standard deviation in the values of each feature.

Web reference: http://www.fp.ucalgary.ca/mhallbey/tutorial.htm

Print references: Haralick, R.M., K. Shanmugam and I. Dinstein. 1973. Textural Features for Image Classification. IEEE Transactions on Systems, Man and Cybernetics. SMC-3(6):610-620.

Haralick, R.M. 1979. Statistical and Structural Approaches to Texture. Proceedings of the IEEE, 67:786-804.

R.W. Conners and C.A. Harlow. A Theoretical Comaprison of Texture Algorithms. IEEE Transactions on Pattern Analysis and Machine Intelligence, 2:204-222, 1980.

R.W. Conners, M.M. Trivedi, and C.A. Harlow. Segmentation of a High-Resolution Urban Scene using Texture Operators. Computer Vision, Graphics and Image Processing, 25:273-310, 1984.

See Also: ScalarImageToCooccurrenceMatrixFilter; HistogramToTextureFeaturesFilter

Author: Zachary Pincus

Definition at line 106 of file itkScalarImageToTextureFeaturesFilter.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef ScalarImageToCooccurrenceMatrixFilter < ImageType, FrequencyContainerType >	CooccurrenceMatrixFilterType

typedef DataObject::Pointer	DataObjectPointer

typedef VectorContainer < unsigned char, TextureFeatureName >	FeatureNameVector

typedef FeatureNameVector::ConstPointer	FeatureNameVectorConstPointer

typedef FeatureNameVector::Pointer	FeatureNameVectorPointer

typedef VectorContainer < unsigned char, double >	FeatureValueVector

typedef DataObjectDecorator < FeatureValueVector >	FeatureValueVectorDataObjectType

typedef FeatureValueVector::Pointer	FeatureValueVectorPointer

typedef THistogramFrequencyContainer	FrequencyContainerType

typedef CooccurrenceMatrixFilterType::HistogramType	HistogramType

typedef ImageType::Pointer	ImagePointer

typedef TImageType	ImageType

typedef ImageType::OffsetType	OffsetType

typedef VectorContainer < unsigned char, OffsetType >	OffsetVector

typedef OffsetVector::ConstPointer	OffsetVectorConstPointer

typedef OffsetVector::Pointer	OffsetVectorPointer

typedef ImageType::PixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef ScalarImageToTextureFeaturesFilter	Self

typedef ProcessObject	Superclass

typedef short	TextureFeatureName

typedef HistogramToTextureFeaturesFilter < HistogramType >	TextureFeaturesFilterType

Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer

typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef std::vector < DataObjectPointer >	DataObjectPointerArray

typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType

typedef std::vector < DataObjectIdentifierType >	NameArray

typedef SmartPointer< Self >	Pointer

typedef ProcessObject	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual void	FastCalculationsOff ()

virtual void	FastCalculationsOn ()

virtual bool	GetFastCalculations () const

const FeatureValueVectorDataObjectType *	GetFeatureMeansOutput () const

const FeatureValueVectorDataObjectType *	GetFeatureStandardDeviationsOutput () const

const ImageType *	GetInput () const

const ImageType *	GetMaskImage () const

virtual const char *	GetNameOfClass () const

virtual void	SetFastCalculations (bool _arg)

void	SetInput (const ImageType *)

void	SetInsidePixelValue (PixelType InsidePixelValue)

void	SetMaskImage (const ImageType *)

void	SetNumberOfBinsPerAxis (unsigned int)


virtual const FeatureValueVector::Pointer &	GetFeatureMeans () const

virtual const FeatureValueVector::Pointer &	GetFeatureStandardDeviations () const


virtual void	SetRequestedFeatures (const FeatureNameVector *_arg)

virtual const FeatureNameVector *	GetRequestedFeatures () const


virtual void	SetOffsets (const OffsetVector *_arg)

virtual const OffsetVector *	GetOffsets () const


void	SetPixelValueMinMax (PixelType min, PixelType max)

Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual void	EnlargeOutputRequestedRegion (DataObject *)

virtual const bool &	GetAbortGenerateData ()

NameArray	GetInputNames () const

MultiThreader *	GetMultiThreader () const

DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

NameArray	GetOutputNames () const

virtual const float &	GetProgress ()

NameArray	GetRequiredInputNames () const

bool	HasInput (const DataObjectIdentifierType &key) const

bool	HasOutput (const DataObjectIdentifierType &key) const

virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)

virtual void	PrepareOutputs ()

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

virtual void	SetProgress (float _arg)

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float amount)

DataObjectPointerArray	GetInputs ()

DataObjectPointerArray	GetOutputs ()

DataObjectPointerArray	GetIndexedInputs ()

DataObjectPointerArray	GetIndexedOutputs ()

DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const

virtual void	SetReleaseDataFlag (bool flag)

virtual bool	GetReleaseDataFlag () const

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual const bool &	GetReleaseDataBeforeUpdateFlag ()

virtual void	ReleaseDataBeforeUpdateFlagOn ()

virtual void	ReleaseDataBeforeUpdateFlagOff ()

virtual void	SetNumberOfThreads (ThreadIdType _arg)

virtual const ThreadIdType &	GetNumberOfThreads ()

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary (void)

const MetaDataDictionary &	GetMetaDataDictionary (void) const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int)

virtual void	UnRegister () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Protected Types
typedef ProcessObject::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType

Protected Member Functions
void	FastCompute ()

void	FullCompute ()

virtual void	GenerateData ()

virtual DataObjectPointer	MakeOutput (DataObjectPointerArraySizeType)

void	PrintSelf (std::ostream &os, Indent indent) const

	ScalarImageToTextureFeaturesFilter ()

virtual	~ScalarImageToTextureFeaturesFilter ()

Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)

virtual void	AddOutput (DataObject *output)

virtual void	CacheInputReleaseDataFlags ()

virtual void	GenerateInputRequestedRegion ()

virtual void	GenerateOutputInformation ()

virtual void	GenerateOutputRequestedRegion (DataObject *output)

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs ()

bool	IsIndexedInputName (const DataObjectIdentifierType &) const

bool	IsIndexedOutputName (const DataObjectIdentifierType &) const

	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))

	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))

	itkLegacyMacro (virtual void RemoveInput(DataObject *input))

	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))

DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const

DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const

DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const

DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const

	ProcessObject ()

virtual void	PropagateResetPipeline ()

virtual void	ReleaseInputs ()

virtual void	RemoveInput (const DataObjectIdentifierType &key)

virtual void	RemoveInput (DataObjectPointerArraySizeType)

virtual void	RemoveOutput (const DataObjectIdentifierType &key)

virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)

virtual void	RestoreInputReleaseDataFlags ()

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)

virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)

void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)

void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)

virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)

virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)

virtual void	SetPrimaryInput (DataObject *input)

virtual void	SetPrimaryOutput (DataObject *output)

virtual void	VerifyInputInformation ()

virtual void	VerifyPreconditions ()

	~ProcessObject ()

DataObject *	GetInput (const DataObjectIdentifierType &key)

const DataObject *	GetInput (const DataObjectIdentifierType &key) const

DataObject *	GetInput (DataObjectPointerArraySizeType idx)

const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const

virtual void	PushBackInput (const DataObject *input)

virtual void	PopBackInput ()

virtual void	PushFrontInput (const DataObject *input)

virtual void	PopFrontInput ()

DataObject *	GetPrimaryInput ()

const DataObject *	GetPrimaryInput () const

virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryInputName (void) const

virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs ()

bool	AddRequiredInputName (const DataObjectIdentifierType &)

bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

bool	RemoveRequiredInputName (const DataObjectIdentifierType &)

bool	IsRequiredInputName (const DataObjectIdentifierType &) const

void	SetRequiredInputNames (const NameArray &)

DataObject *	GetOutput (const DataObjectIdentifierType &key)

const DataObject *	GetOutput (const DataObjectIdentifierType &key) const

virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryOutputName (void) const

DataObject *	GetOutput (DataObjectPointerArraySizeType idx)

const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryOutput ()

const DataObject *	GetPrimaryOutput () const

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Attributes
bool	m_FastCalculations

FeatureValueVectorPointer	m_FeatureMeans

FeatureValueVectorPointer	m_FeatureStandardDeviations

TextureFeaturesFilterType::Pointer	m_GLCMCalculator

CooccurrenceMatrixFilterType::Pointer	m_GLCMGenerator

OffsetVectorConstPointer	m_Offsets

FeatureNameVectorConstPointer	m_RequestedFeatures

Additional Inherited Members
Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime

bool	m_Updating