itk::bio::Genome Class Reference

#include <itkBioGenome.h>

Collaboration diagram for itk::bio::Genome:

Detailed Description

This class implements the abstraction of a biological genome.

The genome is considered to be a sequence of genes, each one having a name and a level of expression. This class is intended to be used by artificial cells implementing cellular algorithms for image processing.

Definition at line 44 of file itkBioGenome.h.

Public Types
typedef std::string	GeneIdType
typedef std::map< GeneIdType, double >	MapType

Public Member Functions
void	Copy (const Genome &genome)
	Genome ()
double	GetExpressionLevel (const GeneIdType &geneId)
void	InsertGene (const GeneIdType &geneId)
void	KnockOutGene (const GeneIdType &geneId)
void	SetExpressionLevel (const GeneIdType &geneId, double level)
virtual	~Genome ()

Static Public Member Functions
static double	Sigmoide (double threshold, double slant, double value)

Private Attributes
MapType	m_Map

Member Typedef Documentation

typedef std::string itk::bio::Genome::GeneIdType

Definition at line 47 of file itkBioGenome.h.

typedef std::map< GeneIdType, double > itk::bio::Genome::MapType

Definition at line 48 of file itkBioGenome.h.

Constructor & Destructor Documentation

itk::bio::Genome::Genome

(

)

virtual itk::bio::Genome::~Genome ( )

virtual

Member Function Documentation

void itk::bio::Genome::Copy

(

const Genome &

genome

)

double itk::bio::Genome::GetExpressionLevel

(

const GeneIdType &

geneId

)

void itk::bio::Genome::InsertGene

(

const GeneIdType &

geneId

)

void itk::bio::Genome::KnockOutGene

(

const GeneIdType &

geneId

)

void itk::bio::Genome::SetExpressionLevel	(	const GeneIdType &	geneId,
		double	level
	)

static double itk::bio::Genome::Sigmoide ( double  threshold, double  slant, double  value  )

inlinestatic

This method computes a normalized Sigmoide function that can be used for gene network computations.

Definition at line 66 of file itkBioGenome.h.

Member Data Documentation

MapType itk::bio::Genome::m_Map

private

Definition at line 72 of file itkBioGenome.h.

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The documentation for this class was generated from the following file:

• itkBioGenome.h