#include <itkFEMScatteredDataPointSetToImageFilter.h>

Inheritance diagram for itk::fem::FEMScatteredDataPointSetToImageFilter< TInputPointSet, TInputMesh, TOutputImage, TInputConfidencePointSet, TInputTensorPointSet >:

Collaboration diagram for itk::fem::FEMScatteredDataPointSetToImageFilter< TInputPointSet, TInputMesh, TOutputImage, TInputConfidencePointSet, TInputTensorPointSet >:

Detailed Description

template<class TInputPointSet, class TInputMesh, class TOutputImage, class TInputConfidencePointSet, class TInputTensorPointSet>
class itk::fem::FEMScatteredDataPointSetToImageFilter< TInputPointSet, TInputMesh, TOutputImage, TInputConfidencePointSet, TInputTensorPointSet >

Scattered data approximation to interpolation in the presence of outliers.

Given a 2- or 3-D scattered and noisy data, this filter is able to approximate the data while rejecting outliers, and then it advances toward interpolation.

This filter also takes the confidence and structrual information into account, if users can provide a scalar to represent the confidence and a tensor to represent the structural information for each feature point.

This filter requires a point set, of which each point is associated with a 2-D or 3-D displacement, as input, and outputs a deformation field. Two optional point sets are supported. Confidence point set: this point set defines the confidence associated with each point, which will make the solver behavior like a weighted Least Square Tensor point set: this point set defines a tensor associated with each point, such as a structural tensor.

The purpose of this filter is to facilitate the use of the FEMRobustSolver, which does the concrete work on finding the solution. See FEMRobustSolver for details.

const unsigned int ParametricDimension = 3;
const unsigned int DataDimension = 3;
typedef int                                           PixelType;
typedef itk::Image<PixelType, ParametricDimension>    InputImageType;
typedef float                                         RealType;
typedef itk::Vector<RealType, DataDimension>          VectorType;
typedef itk::Matrix<RealType, DataDimension,
DataDimension>                                        MatrixType;
typedef itk::Image<VectorType, ParametricDimension>   VectorImageType;
typedef itk::PointSet <VectorType,
ParametricDimension>                                  PointSetType;
typedef itk::PointSet <MatrixType,
 ParametricDimension>                                  TensorPointSetType;
typedef itk::PointSet <RealType, ParametricDimension> ConfidencePointSetType;
typedef itk::Mesh< VectorType, ParametricDimension >  MeshType;
typedef itk::FEMScatteredDataPointSetToImageFilter
<PointSetType, MeshType, VectorImageType,
ConfidencePointSetType, TensorPointSetType>           FilterType;
FilterType::Pointer filter = FilterType::New();
filter->SetInput(displacementPointSet);
filter->SetConfidencePointSet(confidencePointSet); //optional
filter->SetTensorPointSet(tensorPointSet); //optional
filter->SetMesh(aITKMesh);
filter->Update();
DeformationField::Pointer = filter->GetOutput();

Author: Yixun Liu

REFERENCE: O. Clatz, H. Delingette, I.-F. Talos, A. Golby, R. Kikinis, F. Jolesz, N. Ayache, and S. Warfield, "Robust non-rigid registration to capture brain shift from intra-operative MRI", IEEE Trans. Med. Imag., 24(11);1417-27, 2005.

REFERENCE: Yixun Liu, Andriy Fedorov, Ron Kikinis and Nikos Chrisochoides, "Real-time Non-rigidRegistration of Medical Images on a Cooperative Parallel Architecture", IEEE International Conference on Bioinformatics & Biomedicine, pp. 401-404, November 2009.

See Also: FEMRobustSolver

Definition at line 127 of file itkFEMScatteredDataPointSetToImageFilter.h.

Public Types
typedef CellType::CellAutoPointer	CellAutoPointer

typedef CellsContainer::ConstIterator	CellIterator

typedef MeshType::CellsContainer	CellsContainer

typedef MeshType::CellType	CellType

typedef ConfidencePointSetType::PointDataContainer	ConfidencePointDataContainerType

typedef ConfidencePointSetType::PixelType	ConfidencePointDataType

typedef TInputConfidencePointSet	ConfidencePointSetType

typedef ConfidencePointSetType::PointsContainer::ConstIterator	ConfidencePointsIterator

typedef SmartPointer< const Self >	ConstPointer

typedef ContinuousIndex < double, ImageDimension >	ContinuousIndexType

typedef FEMObjectType::ElementContainerType	ElementContainerType

typedef Element2DC0LinearQuadrilateralStrain	FEM2DQuadrilateralType

typedef Element2DC0LinearTriangularStrain	FEM2DTriangleType

typedef Element3DC0LinearHexahedronStrain	FEMHexahedronType

typedef Element::MatrixType	FEMMatrixType

typedef FEMObject< ImageDimension >	FEMObjectType

typedef RobustSolver < ImageDimension >	FEMSolverType

typedef Element3DC0LinearTetrahedronStrain	FEMTetrahedronType

typedef Element::VectorType	FEMVectorType

typedef HexahedronCell< CellType >	HexahedronType

typedef ImageToRectilinearFEMObjectFilter < ImageType >	ImageToRectilinearFEMObjectFilterType

typedef TOutputImage	ImageType

typedef ImageType::IndexType	IndexType

typedef FEMObjectType::LoadContainerType	LoadContainerType

typedef LoadNoisyLandmark	LoadType

typedef FEMObjectType::MaterialContainerType	MaterialContainerType

typedef MaterialType::Pointer	MaterialPointerType

typedef MaterialLinearElasticity	MaterialType

typedef TInputMesh	MeshType

typedef FEMObjectType::NodeContainerType	NodeContainerType

typedef Element::Node	NodeType

typedef ImageType::PixelType	PixelType

typedef PointSetType::PointDataContainer	PointDataContainerType

typedef PointDataContainerType::ConstIterator	PointDataIterator

typedef PointSetType::PixelType	PointDataType

typedef SmartPointer< Self >	Pointer

typedef CellType::PointIdIterator	PointIdIterator

typedef PointSetType::PointsContainer	PointsContainer

typedef TInputPointSet	PointSetType

typedef PointsContainer::ConstIterator	PointsIterator

typedef PointSetType::PointType	PointType

typedef QuadrilateralCell < CellType >	QuadrilateralType

typedef ImageType::RegionType	RegionType

typedef FEMScatteredDataPointSetToImageFilter	Self

typedef ImageType::SizeType	SizeType

typedef ImageType::SpacingType	SpacingType

typedef PointSetToImageFilter < TInputPointSet, TOutputImage >	Superclass

typedef TensorPointSetType::PointDataContainer	TensorPointDataContainerType

typedef TensorPointDataContainerType::Iterator	TensorPointDataIterator

typedef TensorPointSetType::PixelType	TensorPointDataType

typedef TInputTensorPointSet	TensorPointSetType

typedef TensorPointSetType::PointsContainer::ConstIterator	TensorPointsIterator

typedef TetrahedronCell< CellType >	TetrahedronType

typedef TriangleCell< CellType >	TriangleType

Public Types inherited from itk::PointSetToImageFilter< TInputPointSet, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer

typedef TOutputImage::DirectionType	DirectionType

typedef InputPointSetType::ConstPointer	InputPointSetConstPointer

typedef InputPointSetType::Pointer	InputPointSetPointer

typedef TInputPointSet	InputPointSetType

typedef OutputImageType::Pointer	OutputImagePointer

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef TOutputImage	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef TOutputImage::PointType	PointType

typedef PointSetToImageFilter	Self

typedef TOutputImage::SizeType	SizeType

typedef TOutputImage::SpacingType	SpacingType

typedef ImageSource< TOutputImage >	Superclass

typedef OutputImageType::ValueType	ValueType

Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType

typedef OutputImageType::PixelType	OutputImagePixelType

typedef OutputImageType::Pointer	OutputImagePointer

typedef OutputImageType::RegionType	OutputImageRegionType

typedef TOutputImage	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef ImageSource	Self

typedef ProcessObject	Superclass

Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer

typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef std::vector < DataObjectPointer >	DataObjectPointerArray

typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType

typedef std::vector < DataObjectIdentifierType >	NameArray

typedef SmartPointer< Self >	Pointer

typedef ProcessObject	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual const FEMSolverType *	GetFEMSolver () const

virtual const MeshType *	GetMesh () const

virtual FEMSolverType *	GetModifiableFEMSolver ()

virtual MeshType *	GetModifiableMesh ()

virtual const SizeType &	GetNumberOfElements ()

virtual void	SetConfidencePointSet (const ConfidencePointSetType *_arg)

virtual void	SetFEMSolver (FEMSolverType *_arg)

virtual void	SetMesh (MeshType *_arg)

virtual void	SetTensorPointSet (const TensorPointSetType *_arg)


virtual const ContinuousIndexType &	GetPixelsPerElement ()

virtual void	SetPixelsPerElement (ContinuousIndexType _arg)


void	SetElementSpacing (const SpacingType &elementSpacing)

virtual const SpacingType &	GetSpacingPerElement ()

Public Member Functions inherited from itk::PointSetToImageFilter< TInputPointSet, TOutputImage >
const InputPointSetType *	GetInput (void)

const InputPointSetType *	GetInput (unsigned int idx)

virtual const char *	GetNameOfClass () const

virtual const PointType &	GetOrigin ()

virtual const SpacingType &	GetSpacing ()

virtual void	SetInput (const InputPointSetType *pointset)

virtual void	SetInput (unsigned int, const InputPointSetType *pointset)

virtual void	SetOrigin (const float *origin)

virtual void	SetSpacing (const float *spacing)

virtual void	SetSpacing (SpacingType _arg)

virtual void	SetSpacing (const double *spacing)

virtual void	SetDirection (DirectionType _arg)

virtual const DirectionType &	GetDirection ()

virtual void	SetOrigin (PointType _arg)

virtual void	SetOrigin (const double *origin)

virtual void	SetInsideValue (ValueType _arg)

virtual ValueType	GetInsideValue () const

virtual void	SetOutsideValue (ValueType _arg)

virtual ValueType	GetOutsideValue () const

virtual void	SetSize (SizeType _arg)

virtual SizeType	GetSize () const

Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)

virtual void	GraftNthOutput (unsigned int idx, DataObject *output)

virtual void	GraftOutput (DataObject *output)

virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)

OutputImageType *	GetOutput (void)

const OutputImageType *	GetOutput (void) const

virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)

Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual void	EnlargeOutputRequestedRegion (DataObject *)

virtual const bool &	GetAbortGenerateData ()

NameArray	GetInputNames () const

MultiThreader *	GetMultiThreader () const

DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

NameArray	GetOutputNames () const

virtual const float &	GetProgress ()

NameArray	GetRequiredInputNames () const

bool	HasInput (const DataObjectIdentifierType &key) const

bool	HasOutput (const DataObjectIdentifierType &key) const

virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)

virtual void	PrepareOutputs ()

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

virtual void	SetProgress (float _arg)

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float amount)

DataObjectPointerArray	GetInputs ()

DataObjectPointerArray	GetOutputs ()

DataObjectPointerArray	GetIndexedInputs ()

DataObjectPointerArray	GetIndexedOutputs ()

DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const

virtual void	SetReleaseDataFlag (bool flag)

virtual bool	GetReleaseDataFlag () const

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual const bool &	GetReleaseDataBeforeUpdateFlag ()

virtual void	ReleaseDataBeforeUpdateFlagOn ()

virtual void	ReleaseDataBeforeUpdateFlagOff ()

virtual void	SetNumberOfThreads (ThreadIdType _arg)

virtual const ThreadIdType &	GetNumberOfThreads ()

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary (void)

const MetaDataDictionary &	GetMetaDataDictionary (void) const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int)

virtual void	UnRegister () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::PointSetToImageFilter< TInputPointSet, TOutputImage >
static Pointer	New ()

Static Public Attributes
static const unsigned int	ImageDimension = TOutputImage::ImageDimension

Static Public Attributes inherited from itk::PointSetToImageFilter< TInputPointSet, TOutputImage >
static const unsigned int	InputPointSetDimension = InputPointSetType::PointDimension

static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Protected Member Functions
	FEMScatteredDataPointSetToImageFilter ()

void	Generate2DQuadrilateralMesh ()

void	Generate3DHexahedralMesh ()

void	GenerateData ()

void	GenerateRectilinearMesh ()

void	InitializeElements (FEMObjectType *femObject)

void	InitializeFEMObject (FEMObjectType *femObject)

void	InitializeLoads (FEMObjectType *femObject)

void	InitializeMaterials (FEMObjectType *femObject)

void	InitializeNodes (FEMObjectType *femObject)

void	PrintSelf (std::ostream &os, Indent indent) const

void	ProduceDeformationField ()

virtual	~FEMScatteredDataPointSetToImageFilter ()

Protected Member Functions inherited from itk::PointSetToImageFilter< TInputPointSet, TOutputImage >
virtual void	GenerateOutputInformation ()

	PointSetToImageFilter ()

	~PointSetToImageFilter ()

Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()

virtual void	AllocateOutputs ()

virtual void	BeforeThreadedGenerateData ()

virtual const ImageRegionSplitterBase *	GetImageRegionSplitter (void) const

	ImageSource ()

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)

virtual	~ImageSource ()

Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)

virtual void	AddOutput (DataObject *output)

virtual void	CacheInputReleaseDataFlags ()

virtual void	GenerateInputRequestedRegion ()

virtual void	GenerateOutputRequestedRegion (DataObject *output)

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs ()

bool	IsIndexedInputName (const DataObjectIdentifierType &) const

bool	IsIndexedOutputName (const DataObjectIdentifierType &) const

	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))

	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))

	itkLegacyMacro (virtual void RemoveInput(DataObject *input))

	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))

DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const

DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const

DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const

DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const

	ProcessObject ()

virtual void	PropagateResetPipeline ()

virtual void	ReleaseInputs ()

virtual void	RemoveInput (const DataObjectIdentifierType &key)

virtual void	RemoveInput (DataObjectPointerArraySizeType)

virtual void	RemoveOutput (const DataObjectIdentifierType &key)

virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)

virtual void	RestoreInputReleaseDataFlags ()

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)

virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)

void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)

void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)

virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)

virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)

virtual void	SetPrimaryInput (DataObject *input)

virtual void	SetPrimaryOutput (DataObject *output)

virtual void	VerifyInputInformation ()

virtual void	VerifyPreconditions ()

	~ProcessObject ()

DataObject *	GetInput (const DataObjectIdentifierType &key)

const DataObject *	GetInput (const DataObjectIdentifierType &key) const

DataObject *	GetInput (DataObjectPointerArraySizeType idx)

const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const

virtual void	PushBackInput (const DataObject *input)

virtual void	PopBackInput ()

virtual void	PushFrontInput (const DataObject *input)

virtual void	PopFrontInput ()

DataObject *	GetPrimaryInput ()

const DataObject *	GetPrimaryInput () const

virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryInputName (void) const

virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs ()

bool	AddRequiredInputName (const DataObjectIdentifierType &)

bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

bool	RemoveRequiredInputName (const DataObjectIdentifierType &)

bool	IsRequiredInputName (const DataObjectIdentifierType &) const

void	SetRequiredInputNames (const NameArray &)

DataObject *	GetOutput (const DataObjectIdentifierType &key)

const DataObject *	GetOutput (const DataObjectIdentifierType &key) const

virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryOutputName (void) const

DataObject *	GetOutput (DataObjectPointerArraySizeType idx)

const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryOutput ()

const DataObject *	GetPrimaryOutput () const

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Member Functions
	FEMScatteredDataPointSetToImageFilter (const Self &)

void	operator= (const Self &)

Private Attributes
ConfidencePointSetType::ConstPointer	m_ConfidencePointSet

FEMSolverType::ConstPointer	m_FEMDeformedObject

FEMObjectType::Pointer	m_FEMObject

FEMSolverType::Pointer	m_FEMSolver

MaterialPointerType	m_Material

MeshType::Pointer	m_Mesh

SizeType	m_NumberOfElements

ContinuousIndexType	m_PixelsPerElement

SpacingType	m_SpacingPerElement

TensorPointSetType::ConstPointer	m_TensorPointSet

Additional Inherited Members
Protected Types inherited from itk::LightObject
typedef int	InternalReferenceCountType

Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()

static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)

Protected Attributes inherited from itk::PointSetToImageFilter< TInputPointSet, TOutputImage >
DirectionType	m_Direction

ValueType	m_InsideValue

PointType	m_Origin

ValueType	m_OutsideValue

SizeType	m_Size

SpacingType	m_Spacing