#include <vector>
#include "itksys/SystemTools.hxx"
int main( int argc, char* argv[] )
{
if( argc < 3 )
{
std::cerr << "Usage: " << argv[0] <<
" DicomDirectory OutputDicomDirectory" << std::endl;
return EXIT_FAILURE;
}
typedef signed short PixelType;
const unsigned int Dimension = 3;
ImageIOType::Pointer gdcmIO = ImageIOType::New();
NamesGeneratorType::Pointer namesGenerator = NamesGeneratorType::New();
namesGenerator->SetInputDirectory( argv[1] );
const ReaderType::FileNamesContainer & filenames =
namesGenerator->GetInputFileNames();
unsigned int numberOfFilenames = filenames.size();
std::cout << numberOfFilenames << std::endl;
for(unsigned int fni = 0; fni<numberOfFilenames; fni++)
{
std::cout << "filename # " << fni << " = ";
std::cout << filenames[fni] << std::endl;
}
ReaderType::Pointer reader = ReaderType::New();
reader->SetImageIO( gdcmIO );
reader->SetFileNames( filenames );
try
{
reader->Update();
}
{
std::cerr << "Exception thrown while writing the image" << std::endl;
std::cerr << excp << std::endl;
return EXIT_FAILURE;
}
const char * outputDirectory = argv[2];
itksys::SystemTools::MakeDirectory( outputDirectory );
typedef signed short OutputPixelType;
const unsigned int OutputDimension = 2;
ImageType, Image2DType > SeriesWriterType;
SeriesWriterType::Pointer seriesWriter = SeriesWriterType::New();
seriesWriter->SetInput( reader->GetOutput() );
seriesWriter->SetImageIO( gdcmIO );
namesGenerator->SetOutputDirectory( outputDirectory );
seriesWriter->SetFileNames( namesGenerator->GetOutputFileNames() );
seriesWriter->SetMetaDataDictionaryArray(
reader->GetMetaDataDictionaryArray() );
try
{
seriesWriter->Update();
}
{
std::cerr << "Exception thrown while writing the series " << std::endl;
std::cerr << excp << std::endl;
return EXIT_FAILURE;
}
return EXIT_SUCCESS;
}