#include <itkGDCMImageIO.h>

Inheritance diagram for itk::GDCMImageIO:

Collaboration diagram for itk::GDCMImageIO:

Detailed Description

ImageIO class for reading and writing DICOM V3.0 and ACR/NEMA 1&2 uncompressed images This class is only an adaptor to the gdcm library (currently gdcm 1.2.x is used by default):

GDCM 1.2 can be found at: http://www.creatis.insa-lyon.fr/software/public/Gdcm/

CREATIS INSA - Lyon 2003-2008 http://www.creatis.insa-lyon.fr/site/en

Using the CMake variable: ITK_USE_SYSTEM_GDCM it is now possible to use a system installed GDCM 2.x release. GDCM 2.x is now being developed on sourceforge.net :

    http://gdcm.sourceforge.net

Documentation:

http://sourceforge.net/apps/mediawiki/gdcm/index.php?title=ITK_USE_SYSTEM_GDCM
http://sourceforge.net/apps/mediawiki/gdcm/index.php?title=GDCM_Release_2.0
Warning
There are several restrictions to this current writer:
- Even though during the writing process you pass in a DICOM file as input The output file may not contains ALL DICOM field from the input file. In particular:
  - The SeQuence DICOM field (SQ).
  - Fields from Private Dictionary
- Some very long (>0xfff) binary fields are not loaded (typically 0029|0010), you need to explicitely set the maximum length of elements to load to be bigger (see Get/SetMaxSizeLoadEntry)
- GDCMImageIO was not handling rescale slope/intercept properly. This is fixed as of 11/12/2007
- In DICOM some field are stored directly using there binary representation. When loaded into the MetaDataDict some fields are converted to ASCII (only VR: OB/OW/OF and UN are encoded as mime64).
Wiki Examples:
- All Examples
- Resample a DICOM series

Examples:: IO/DicomImageReadChangeHeaderWrite.cxx, IO/DicomImageReadPrintTags.cxx, IO/DicomImageReadWrite.cxx, IO/DicomSeriesReadGaussianImageWrite.cxx, IO/DicomSeriesReadImageWrite2.cxx, IO/DicomSeriesReadPrintTags.cxx, IO/DicomSeriesReadSeriesWrite.cxx, and IO/ImageReadDicomSeriesWrite.cxx.

Definition at line 86 of file itkGDCMImageIO.h.

Public Types
typedef SmartPointer< Self >	Pointer

typedef GDCMImageIO	Self

typedef ImageIOBase	Superclass

Public Types inherited from itk::ImageIOBase
typedef std::vector< std::string >	ArrayOfExtensionsType

typedef ::itk::OffsetValueType	BufferSizeType

enum	ByteOrder { BigEndian, LittleEndian, OrderNotApplicable }

enum	FileType { ASCII, Binary, TypeNotApplicable }

typedef ::itk::IndexValueType	IndexValueType

enum	IOComponentType { UNKNOWNCOMPONENTTYPE, UCHAR, CHAR, USHORT, SHORT, UINT, INT, ULONG, LONG, FLOAT, DOUBLE }

enum	IOPixelType { UNKNOWNPIXELTYPE, SCALAR, RGB, RGBA, OFFSET, VECTOR, POINT, COVARIANTVECTOR, SYMMETRICSECONDRANKTENSOR, DIFFUSIONTENSOR3D, COMPLEX, FIXEDARRAY, MATRIX }

typedef SmartPointer< Self >	Pointer

typedef ImageIOBase	Self

typedef ::itk::intmax_t	SizeType

typedef ::itk::SizeValueType	SizeValueType

typedef LightProcessObject	Superclass

Public Types inherited from itk::LightProcessObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightProcessObject	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual bool	CanReadFile (const char *) ITK_OVERRIDE

virtual bool	CanWriteFile (const char *) ITK_OVERRIDE

virtual ::itk::LightObject::Pointer	CreateAnother (void) const

void	GetBodyPart (char *part)

void	GetInstitution (char *ins)

void	GetManufacturer (char *manu)

void	GetModality (char *modality)

void	GetModel (char *model)

virtual const char *	GetNameOfClass () const

void	GetNumberOfSeriesInStudy (char *series)

void	GetNumberOfStudyRelatedSeries (char *series)

void	GetPatientAge (char *age)

void	GetPatientDOB (char *dob)

void	GetPatientID (char *id)

void	GetPatientName (char *name)

void	GetPatientSex (char *sex)

void	GetScanOptions (char *options)

void	GetStudyDate (char *date)

void	GetStudyDescription (char *desc)

void	GetStudyID (char *id)

bool	GetValueFromTag (const std::string &tag, std::string &value)

virtual void	Read (void *buffer) ITK_OVERRIDE

virtual void	ReadImageInformation () ITK_OVERRIDE

virtual void	SetMaxSizeLoadEntry (const long)

virtual void	Write (const void *buffer) ITK_OVERRIDE

virtual void	WriteImageInformation () ITK_OVERRIDE


virtual IOComponentType	GetInternalComponentType () const

virtual void	SetInternalComponentType (const IOComponentType _arg)


virtual double	GetRescaleSlope () const

virtual double	GetRescaleIntercept () const


virtual const char *	GetUIDPrefix () const

virtual void	SetUIDPrefix (const char *_arg)


virtual const char *	GetStudyInstanceUID () const

virtual const char *	GetSeriesInstanceUID () const

virtual const char *	GetFrameOfReferenceInstanceUID () const


virtual void	SetKeepOriginalUID (bool _arg)

virtual bool	GetKeepOriginalUID () const

virtual void	KeepOriginalUIDOn ()

virtual void	KeepOriginalUIDOff ()


virtual void	SetLoadPrivateTags (bool _arg)

virtual bool	GetLoadPrivateTags () const

virtual void	LoadPrivateTagsOn ()

virtual void	LoadPrivateTagsOff ()


virtual void	SetLoadSequences (const bool)

virtual bool	GetLoadSequences () const

virtual void	LoadSequencesOn ()

virtual void	LoadSequencesOff ()

Public Member Functions inherited from itk::ImageIOBase
virtual bool	CanStreamRead ()

virtual bool	CanStreamWrite ()

virtual ImageIORegion	GenerateStreamableReadRegionFromRequestedRegion (const ImageIORegion &requested) const

virtual unsigned int	GetActualNumberOfSplitsForWriting (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion)

std::string	GetByteOrderAsString (ByteOrder) const

virtual unsigned int	GetComponentSize () const

virtual IOComponentType	GetComponentType () const

virtual const std::type_info &	GetComponentTypeInfo () const

virtual std::vector< double >	GetDefaultDirection (unsigned int i) const

virtual itk::SizeValueType	GetDimensions (unsigned int i) const

virtual std::vector< double >	GetDirection (unsigned int i) const

std::string	GetFileTypeAsString (FileType) const

SizeType	GetImageSizeInBytes () const

SizeType	GetImageSizeInComponents () const

SizeType	GetImageSizeInPixels () const

virtual unsigned int	GetNumberOfDimensions () const

virtual double	GetOrigin (unsigned int i) const

virtual SizeType	GetPixelStride () const

virtual double	GetSpacing (unsigned int i) const

virtual ImageIORegion	GetSplitRegionForWriting (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion)

const ArrayOfExtensionsType &	GetSupportedReadExtensions () const

const ArrayOfExtensionsType &	GetSupportedWriteExtensions () const

void	SetByteOrderToLittleEndian ()

virtual void	SetComponentType (const IOComponentType _arg)

virtual void	SetDirection (unsigned int i, const std::vector< double > &direction)

virtual void	SetDirection (unsigned int i, const vnl_vector< double > &direction)

void	SetFileTypeToBinary ()

void	SetNumberOfDimensions (unsigned int)

virtual void	SetOrigin (unsigned int i, double origin)

template<typename TPixel , unsigned VLength>
void	SetPixelTypeInfo (const SymmetricSecondRankTensor< TPixel, VLength > *)

template<typename TPixel >
void	SetPixelTypeInfo (const DiffusionTensor3D< TPixel > *)

template<typename TPixel , unsigned VLength>
void	SetPixelTypeInfo (const Matrix< TPixel, VLength, VLength > *)

template<typename TPixel >
void	SetPixelTypeInfo (const std::complex< TPixel > *)

template<unsigned VLength>
void	SetPixelTypeInfo (const Offset< VLength > *)

virtual void	SetSpacing (unsigned int i, double spacing)

template<typename TPixel >
void	SetTypeInfo (const TPixel *)

virtual bool	SupportsDimension (unsigned long dim)

virtual void	SetFileName (const char *_arg)

virtual const char *	GetFileName () const

virtual void	SetDimensions (unsigned int i, unsigned int dim)

virtual void	SetIORegion (ImageIORegion _arg)

virtual const ImageIORegion &	GetIORegion () const

virtual void	SetPixelType (const IOPixelType _arg)

virtual IOPixelType	GetPixelType () const

virtual void	SetNumberOfComponents (unsigned int _arg)

virtual const unsigned int &	GetNumberOfComponents () const

virtual void	SetUseCompression (bool _arg)

virtual bool	GetUseCompression () const

virtual void	UseCompressionOn ()

virtual void	UseCompressionOff ()

virtual void	SetUseStreamedReading (bool _arg)

virtual bool	GetUseStreamedReading () const

virtual void	UseStreamedReadingOn ()

virtual void	UseStreamedReadingOff ()

virtual void	SetUseStreamedWriting (bool _arg)

virtual bool	GetUseStreamedWriting () const

virtual void	UseStreamedWritingOn ()

virtual void	UseStreamedWritingOff ()

virtual void	SetFileType (const FileType _arg)

virtual FileType	GetFileType () const

void	SetFileTypeToASCII ()

virtual void	SetByteOrder (const ByteOrder _arg)

virtual ByteOrder	GetByteOrder () const

void	SetByteOrderToBigEndian ()

template<typename TPixel >
void	SetPixelTypeInfo (const TPixel *)

template<typename TPixel >
void	SetPixelTypeInfo (const RGBPixel< TPixel > *)

template<typename TPixel >
void	SetPixelTypeInfo (const RGBAPixel< TPixel > *)

template<typename TPixel , unsigned VLength>
void	SetPixelTypeInfo (const Vector< TPixel, VLength > *)

template<typename TPixel >
void	SetPixelTypeInfo (const VariableLengthVector< TPixel > *)

template<typename TPixel , unsigned VLength>
void	SetPixelTypeInfo (const CovariantVector< TPixel, VLength > *)

template<typename TPixel , unsigned VLength>
void	SetPixelTypeInfo (const FixedArray< TPixel, VLength > *)

Public Member Functions inherited from itk::LightProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual const bool &	GetAbortGenerateData () const

virtual void	SetAbortGenerateData (bool _arg)

virtual void	UpdateOutputData ()

void	UpdateProgress (float amount)

virtual void	SetProgress (float _arg)

virtual const float &	GetProgress () const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary (void)

const MetaDataDictionary &	GetMetaDataDictionary (void) const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const ITK_OVERRIDE

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int) ITK_OVERRIDE

virtual void	UnRegister () const ITK_OVERRIDE

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static bool	GetLabelFromTag (const std::string &tag, std::string &labelId)

static Pointer	New ()


static void	SetLoadSequencesDefault (bool)

static void	LoadSequencesDefaultOn ()

static void	LoadSequencesDefaultOff ()

static bool	GetLoadSequencesDefault ()


static void	SetLoadPrivateTagsDefault (bool)

static void	LoadPrivateTagsDefaultOn ()

static void	LoadPrivateTagsDefaultOff ()

static bool	GetLoadPrivateTagsDefault ()

Static Public Member Functions inherited from itk::ImageIOBase
static std::string	GetComponentTypeAsString (IOComponentType)

static IOComponentType	GetComponentTypeFromString (const std::string &typeString)

static std::string	GetPixelTypeAsString (IOPixelType)

static IOPixelType	GetPixelTypeFromString (const std::string &pixelString)

Static Public Member Functions inherited from itk::LightProcessObject
static Pointer	New ()

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Protected Member Functions
	GDCMImageIO ()

void	InternalReadImageInformation ()

virtual void	PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE

	~GDCMImageIO ()

Protected Member Functions inherited from itk::ImageIOBase
void	AddSupportedReadExtension (const char *extension)

void	AddSupportedWriteExtension (const char *extension)

void	ComputeStrides ()

virtual unsigned int	GetActualNumberOfSplitsForWritingCanStreamWrite (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion) const

SizeType	GetComponentStride () const

virtual const ImageRegionSplitterBase *	GetImageRegionSplitter (void) const

virtual unsigned int	GetPixelSize () const

SizeType	GetRowStride () const

SizeType	GetSliceStride () const

virtual ImageIORegion	GetSplitRegionForWritingCanStreamWrite (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion) const

	ImageIOBase ()

virtual void	OpenFileForReading (std::ifstream &inputStream, const std::string &filename, bool ascii=false)

virtual void	OpenFileForWriting (std::ofstream &outputStream, const std::string &filename, bool truncate=true, bool ascii=false)

virtual void	ReadBufferAsASCII (std::istream &os, void *buffer, IOComponentType ctype, SizeType numberOfBytesToBeRead)

bool	ReadBufferAsBinary (std::istream &os, void *buffer, SizeType numberOfBytesToBeRead)

virtual void	Reset (const bool freeDynamic=true)

void	Resize (const unsigned int numDimensions, const unsigned int *dimensions)

virtual void	WriteBufferAsASCII (std::ostream &os, const void *buffer, IOComponentType ctype, SizeType numberOfBytesToWrite)

	~ImageIOBase ()

Protected Member Functions inherited from itk::LightProcessObject
virtual void	GenerateData ()

	LightProcessObject ()

	~LightProcessObject ()

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
std::string	m_FrameOfReferenceInstanceUID

bool	m_KeepOriginalUID

bool	m_LoadPrivateTags

double	m_RescaleIntercept

double	m_RescaleSlope

std::string	m_SeriesInstanceUID

std::string	m_StudyInstanceUID

std::string	m_UIDPrefix

Protected Attributes inherited from itk::ImageIOBase
ByteOrder	m_ByteOrder

IOComponentType	m_ComponentType

std::vector< SizeValueType >	m_Dimensions

std::vector< std::vector < double > >	m_Direction

std::string	m_FileName

FileType	m_FileType

bool	m_Initialized

ImageIORegion	m_IORegion

unsigned int	m_NumberOfComponents

unsigned int	m_NumberOfDimensions

std::vector< double >	m_Origin

IOPixelType	m_PixelType

std::vector< double >	m_Spacing

std::vector< SizeType >	m_Strides

bool	m_UseCompression

bool	m_UseStreamedReading

bool	m_UseStreamedWriting

Protected Attributes inherited from itk::LightObject
InternalReferenceCountType	m_ReferenceCount

SimpleFastMutexLock	m_ReferenceCountLock

Private Member Functions
	GDCMImageIO (const Self &)

void	operator= (const Self &)

Private Attributes
std::string	m_BodyPart

TCompressionType	m_CompressionType

InternalHeader *	m_DICOMHeader

unsigned int	m_GlobalNumberOfDimensions

std::string	m_Institution

ImageIOBase::IOComponentType	m_InternalComponentType

std::string	m_Manufacturer

std::string	m_Modality

std::string	m_Model

std::string	m_NumberOfSeriesInStudy

std::string	m_NumberOfStudyRelatedSeries

std::string	m_PatientAge

std::string	m_PatientDOB

std::string	m_PatientID

std::string	m_PatientName

std::string	m_PatientSex

std::string	m_ScanOptions

std::string	m_StudyDate

std::string	m_StudyDescription

std::string	m_StudyID

enum	TCompressionType { JPEG = 0, JPEG2000, JPEGLS, RLE }

virtual void	SetCompressionType (const TCompressionType _arg)

virtual TCompressionType	GetCompressionType () const

Additional Inherited Members
Protected Types inherited from itk::LightObject
typedef int	InternalReferenceCountType

Member Typedef Documentation

typedef SmartPointer< Self > itk::GDCMImageIO::Pointer

Definition at line 92 of file itkGDCMImageIO.h.

typedef GDCMImageIO itk::GDCMImageIO::Self

Standard class typedefs.

Definition at line 90 of file itkGDCMImageIO.h.

typedef ImageIOBase itk::GDCMImageIO::Superclass

Definition at line 91 of file itkGDCMImageIO.h.

Member Enumeration Documentation

enum itk::GDCMImageIO::TCompressionType

Set/Get a compression type to use.

Enumerator
JPEG
JPEG2000
JPEGLS
RLE

Definition at line 274 of file itkGDCMImageIO.h.

Constructor & Destructor Documentation

itk::GDCMImageIO::GDCMImageIO ( )

protected

itk::GDCMImageIO::~GDCMImageIO ( )

protected

itk::GDCMImageIO::GDCMImageIO ( const Self & )

private

Member Function Documentation

virtual bool itk::GDCMImageIO::CanReadFile ( const char * )

virtual

Determine the file type. Returns true if this ImageIO can read the file specified.

Implements itk::ImageIOBase.

virtual bool itk::GDCMImageIO::CanWriteFile ( const char * )

virtual

Determine the file type. Returns true if this ImageIO can write the file specified. GDCM triggers on ".dcm" and ".dicom".

Implements itk::ImageIOBase.

virtual::itk::LightObject::Pointer itk::GDCMImageIO::CreateAnother ( void ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightProcessObject.

void itk::GDCMImageIO::GetBodyPart ( char * part )

virtual TCompressionType itk::GDCMImageIO::GetCompressionType ( ) const

virtual

Set/Get a compression type to use.

virtual const char* itk::GDCMImageIO::GetFrameOfReferenceInstanceUID ( ) const

virtual

Access the generated DICOM UID's.

void itk::GDCMImageIO::GetInstitution ( char * ins )

virtual IOComponentType itk::GDCMImageIO::GetInternalComponentType ( ) const

virtual

Set/Get the original component type of the image. This differs from ComponentType which may change as a function of rescale slope and intercept.

virtual bool itk::GDCMImageIO::GetKeepOriginalUID ( ) const

virtual

Preserve the original DICOM UID of the input files

static bool itk::GDCMImageIO::GetLabelFromTag	(	const std::string &	tag,
		std::string &	labelId
	)

static

Method for consulting the DICOM dictionary and recovering the text description of a field using its numeric tag represented as a string. If the tagkey is not found in the dictionary then this static method return false and the value "Unknown " in the labelId. If the tagkey is found then this static method returns true and the actual string descriptor of the tagkey is returned in the variable labelId.

Examples:: IO/DicomImageReadPrintTags.cxx.

virtual bool itk::GDCMImageIO::GetLoadPrivateTags ( ) const

virtual

Parse and load any private tags in the DICOM file. Loading DICOM files is faster when private tags are not needed. Default is false.

static bool itk::GDCMImageIO::GetLoadPrivateTagsDefault ( )

inlinestatic

Global method to define the default value for LoadPrivateTags. When instances of GDCMImageIO are created, the ivar LoadPrivateTags is initialized to the value of LoadPrivateTagsDefault. This method is useful when relying on the IO factory mechanism to load images rather than specifying a particular ImageIO object on the readers. Default is false.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 269 of file itkGDCMImageIO.h.

virtual bool itk::GDCMImageIO::GetLoadSequences ( ) const

inlinevirtual

Parse any sequences in the DICOM file. Defaults to the value of LoadSequencesDefault. Loading DICOM files is faster when sequences are not needed.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 239 of file itkGDCMImageIO.h.

static bool itk::GDCMImageIO::GetLoadSequencesDefault ( )

inlinestatic

Global method to define the default value for LoadSequences. When instances of GDCMImageIO are created, the ivar LoadSequences is initialized to the value of LoadSequencesDefault. This method is useful when relying on the IO factory mechanism to load images rather than specifying a particular ImageIO object on the readers. Default is false.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 255 of file itkGDCMImageIO.h.

void itk::GDCMImageIO::GetManufacturer ( char * manu )

void itk::GDCMImageIO::GetModality ( char * modality )

void itk::GDCMImageIO::GetModel ( char * model )

virtual const char* itk::GDCMImageIO::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageIOBase.

void itk::GDCMImageIO::GetNumberOfSeriesInStudy ( char * series )

void itk::GDCMImageIO::GetNumberOfStudyRelatedSeries ( char * series )

void itk::GDCMImageIO::GetPatientAge ( char * age )

void itk::GDCMImageIO::GetPatientDOB ( char * dob )

void itk::GDCMImageIO::GetPatientID ( char * id )

void itk::GDCMImageIO::GetPatientName ( char * name )

Convenience methods to query patient information and scanner information. These methods are here for compatibility with the DICOMImageIO2 class and as such should not be used in any new code. They rely on properly preallocated buffer, which is not a good practice. Instead user are encourage to use directly the GetValueFromTag function

void itk::GDCMImageIO::GetPatientSex ( char * sex )

virtual double itk::GDCMImageIO::GetRescaleIntercept ( ) const

virtual

Macro to access Rescale Slope and Rescale Intercept. Which are needed to rescale properly image when needed. User then need to Always check those value when access value from the DICOM header

virtual double itk::GDCMImageIO::GetRescaleSlope ( ) const

virtual

Macro to access Rescale Slope and Rescale Intercept. Which are needed to rescale properly image when needed. User then need to Always check those value when access value from the DICOM header

void itk::GDCMImageIO::GetScanOptions ( char * options )

virtual const char* itk::GDCMImageIO::GetSeriesInstanceUID ( ) const

virtual

Access the generated DICOM UID's.

void itk::GDCMImageIO::GetStudyDate ( char * date )

void itk::GDCMImageIO::GetStudyDescription ( char * desc )

void itk::GDCMImageIO::GetStudyID ( char * id )

virtual const char* itk::GDCMImageIO::GetStudyInstanceUID ( ) const

virtual

Access the generated DICOM UID's.

virtual const char* itk::GDCMImageIO::GetUIDPrefix ( ) const

virtual

Macro to access the DICOM UID prefix. By default this is the ITK root id. This default can be overriden if the exam is for example part of an existing study.

bool itk::GDCMImageIO::GetValueFromTag	(	const std::string &	tag,
		std::string &	value
	)

More general method to retrieve an arbitrary DICOM value based on a DICOM Tag (eg "0123|45ef").

void itk::GDCMImageIO::InternalReadImageInformation ( )

protected

virtual void itk::GDCMImageIO::KeepOriginalUIDOff ( )

virtual

Preserve the original DICOM UID of the input files

virtual void itk::GDCMImageIO::KeepOriginalUIDOn ( )

virtual

Preserve the original DICOM UID of the input files

static void itk::GDCMImageIO::LoadPrivateTagsDefaultOff ( )

inlinestatic

Global method to define the default value for LoadPrivateTags. When instances of GDCMImageIO are created, the ivar LoadPrivateTags is initialized to the value of LoadPrivateTagsDefault. This method is useful when relying on the IO factory mechanism to load images rather than specifying a particular ImageIO object on the readers. Default is false.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 268 of file itkGDCMImageIO.h.

static void itk::GDCMImageIO::LoadPrivateTagsDefaultOn ( )

inlinestatic

Global method to define the default value for LoadPrivateTags. When instances of GDCMImageIO are created, the ivar LoadPrivateTags is initialized to the value of LoadPrivateTagsDefault. This method is useful when relying on the IO factory mechanism to load images rather than specifying a particular ImageIO object on the readers. Default is false.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 267 of file itkGDCMImageIO.h.

virtual void itk::GDCMImageIO::LoadPrivateTagsOff ( )

virtual

Parse and load any private tags in the DICOM file. Loading DICOM files is faster when private tags are not needed. Default is false.

virtual void itk::GDCMImageIO::LoadPrivateTagsOn ( )

virtual

Parse and load any private tags in the DICOM file. Loading DICOM files is faster when private tags are not needed. Default is false.

static void itk::GDCMImageIO::LoadSequencesDefaultOff ( )

inlinestatic

Global method to define the default value for LoadSequences. When instances of GDCMImageIO are created, the ivar LoadSequences is initialized to the value of LoadSequencesDefault. This method is useful when relying on the IO factory mechanism to load images rather than specifying a particular ImageIO object on the readers. Default is false.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 254 of file itkGDCMImageIO.h.

static void itk::GDCMImageIO::LoadSequencesDefaultOn ( )

inlinestatic

Global method to define the default value for LoadSequences. When instances of GDCMImageIO are created, the ivar LoadSequences is initialized to the value of LoadSequencesDefault. This method is useful when relying on the IO factory mechanism to load images rather than specifying a particular ImageIO object on the readers. Default is false.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 253 of file itkGDCMImageIO.h.

virtual void itk::GDCMImageIO::LoadSequencesOff ( )

inlinevirtual

Parse any sequences in the DICOM file. Defaults to the value of LoadSequencesDefault. Loading DICOM files is faster when sequences are not needed.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 241 of file itkGDCMImageIO.h.

virtual void itk::GDCMImageIO::LoadSequencesOn ( )

inlinevirtual

Parse any sequences in the DICOM file. Defaults to the value of LoadSequencesDefault. Loading DICOM files is faster when sequences are not needed.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 240 of file itkGDCMImageIO.h.

static Pointer itk::GDCMImageIO::New ( )

static

Method for creation through the object factory.

Examples:: IO/DicomPrintPatientInformation.cxx.

void itk::GDCMImageIO::operator= ( const Self & )

private

virtual void itk::GDCMImageIO::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageIOBase.

virtual void itk::GDCMImageIO::Read ( void * buffer )

virtual

Reads the data from disk into the memory buffer provided.

Implements itk::ImageIOBase.

virtual void itk::GDCMImageIO::ReadImageInformation ( )

virtual

Set the spacing and dimesion information for the current filename.

Implements itk::ImageIOBase.

virtual void itk::GDCMImageIO::SetCompressionType ( const TCompressionType _arg )

virtual

Set/Get a compression type to use.

virtual void itk::GDCMImageIO::SetInternalComponentType ( const IOComponentType _arg )

virtual

Set/Get the original component type of the image. This differs from ComponentType which may change as a function of rescale slope and intercept.

virtual void itk::GDCMImageIO::SetKeepOriginalUID ( bool _arg )

virtual

Preserve the original DICOM UID of the input files

virtual void itk::GDCMImageIO::SetLoadPrivateTags ( bool _arg )

virtual

Parse and load any private tags in the DICOM file. Loading DICOM files is faster when private tags are not needed. Default is false.

static void itk::GDCMImageIO::SetLoadPrivateTagsDefault ( bool )

inlinestatic

Global method to define the default value for LoadPrivateTags. When instances of GDCMImageIO are created, the ivar LoadPrivateTags is initialized to the value of LoadPrivateTagsDefault. This method is useful when relying on the IO factory mechanism to load images rather than specifying a particular ImageIO object on the readers. Default is false.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 266 of file itkGDCMImageIO.h.

virtual void itk::GDCMImageIO::SetLoadSequences ( const bool )

inlinevirtual

Parse any sequences in the DICOM file. Defaults to the value of LoadSequencesDefault. Loading DICOM files is faster when sequences are not needed.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 238 of file itkGDCMImageIO.h.

static void itk::GDCMImageIO::SetLoadSequencesDefault ( bool )

inlinestatic

Global method to define the default value for LoadSequences. When instances of GDCMImageIO are created, the ivar LoadSequences is initialized to the value of LoadSequencesDefault. This method is useful when relying on the IO factory mechanism to load images rather than specifying a particular ImageIO object on the readers. Default is false.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 252 of file itkGDCMImageIO.h.

virtual void itk::GDCMImageIO::SetMaxSizeLoadEntry ( const long )

inlinevirtual

A DICOM file can contains multiple binary stream that can be very long For example an Overlay on the image. Most of the time user do not want to load this binary structure in memory since it can consume lot of memory. Therefore any field that is bigger than the default value 0xfff is discarded and just seek'd This method allow advanced user to force the reading of such field

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 231 of file itkGDCMImageIO.h.

virtual void itk::GDCMImageIO::SetUIDPrefix ( const char * _arg )

virtual

Macro to access the DICOM UID prefix. By default this is the ITK root id. This default can be overriden if the exam is for example part of an existing study.

virtual void itk::GDCMImageIO::Write ( const void * buffer )

virtual

Writes the data to disk from the memory buffer provided. Make sure that the IORegion has been set properly.

Implements itk::ImageIOBase.

virtual void itk::GDCMImageIO::WriteImageInformation ( )

virtual

Writes the spacing and dimensions of the image. Assumes SetFileName has been called with a valid file name.

Implements itk::ImageIOBase.

Member Data Documentation

std::string itk::GDCMImageIO::m_BodyPart

private

Definition at line 308 of file itkGDCMImageIO.h.

TCompressionType itk::GDCMImageIO::m_CompressionType

private

Definition at line 324 of file itkGDCMImageIO.h.

InternalHeader* itk::GDCMImageIO::m_DICOMHeader

private

Definition at line 327 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_FrameOfReferenceInstanceUID

protected

Definition at line 292 of file itkGDCMImageIO.h.

unsigned int itk::GDCMImageIO::m_GlobalNumberOfDimensions

private

defines whether this image is a 2D out of a 2D image or a 2D out of a 3D image.

Definition at line 323 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_Institution

private

Definition at line 316 of file itkGDCMImageIO.h.

ImageIOBase::IOComponentType itk::GDCMImageIO::m_InternalComponentType

private

Definition at line 326 of file itkGDCMImageIO.h.

bool itk::GDCMImageIO::m_KeepOriginalUID

protected

Definition at line 294 of file itkGDCMImageIO.h.

bool itk::GDCMImageIO::m_LoadPrivateTags

protected

Definition at line 296 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_Manufacturer

private

Definition at line 315 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_Modality

private

Definition at line 314 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_Model

private

Definition at line 317 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_NumberOfSeriesInStudy

private

Definition at line 309 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_NumberOfStudyRelatedSeries

private

Definition at line 310 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_PatientAge

private

Definition at line 312 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_PatientDOB

private

Definition at line 305 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_PatientID

private

Definition at line 304 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_PatientName

private

Definition at line 303 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_PatientSex

private

Definition at line 311 of file itkGDCMImageIO.h.

double itk::GDCMImageIO::m_RescaleIntercept

protected

Definition at line 287 of file itkGDCMImageIO.h.

double itk::GDCMImageIO::m_RescaleSlope

protected

Definition at line 286 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_ScanOptions

private

Definition at line 318 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_SeriesInstanceUID

protected

Definition at line 291 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_StudyDate

private

Definition at line 313 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_StudyDescription

private

Definition at line 307 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_StudyID

private

Definition at line 306 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_StudyInstanceUID

protected

Definition at line 290 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_UIDPrefix

protected

Definition at line 289 of file itkGDCMImageIO.h.

The documentation for this class was generated from the following file:

itkGDCMImageIO.h

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation