template<typename TScalar, unsigned int NDimensions>
class itk::BSplineExponentialDiffeomorphicTransform< TScalar, NDimensions >
Exponential transform using B-splines as the smoothing kernel.
Exponential transform inspired by the work of J. Ashburner (see reference below). Assuming a constant velocity field, the transform takes as input the update field at time point t = 1, and smooths it using a B-spline smoothing (i.e. fitting) operation, defined by SplineOrder
and NumberOfControlPointsForTheUpdateField
. We add that the current estimate of the velocity field and then perform a second smoothing step such that the new velocity field is
We then exponentiate using the class ExponentialDisplacementImageFilter
to yield both the forward and inverse displacement fields.
- J. Ashburner. A Fast Diffeomorphic Image Registration Algorithm. NeuroImage, 38(1):95-113, 2007.
- Author
- Nick Tustison
-
Brian Avants
Definition at line 56 of file itkBSplineExponentialDiffeomorphicTransform.h.
|
typedef
BSplineFilterType::ArrayType | ArrayType |
|
typedef ArrayType::ValueType | ArrayValueType |
|
typedef
DisplacementFieldToBSplineImageFilter
< ConstantVelocityFieldType,
ConstantVelocityFieldType > | BSplineFilterType |
|
typedef
Superclass::ConstantVelocityFieldPointer | ConstantVelocityFieldPointer |
|
typedef
Superclass::ConstantVelocityFieldType | ConstantVelocityFieldType |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef Superclass::DerivativeType | DerivativeType |
|
typedef DerivativeType::ValueType | DerivativeValueType |
|
typedef
Superclass::DisplacementFieldPointer | DisplacementFieldPointer |
|
typedef
Superclass::DisplacementFieldType | DisplacementFieldType |
|
typedef
DisplacementFieldType::PixelType | DisplacementVectorType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef PointSet
< ConstantVelocityFieldType,
Dimension > | PointSetType |
|
typedef Superclass::ScalarType | ScalarType |
|
typedef
BSplineExponentialDiffeomorphicTransform | Self |
|
typedef unsigned int | SplineOrderType |
|
typedef
ConstantVelocityFieldTransform
< TScalar, NDimensions > | Superclass |
|
typedef
BSplineFilterType::WeightsContainerType | WeightsContainerType |
|
typedef
ConstantVelocityFieldInterpolatorType::Pointer | ConstantVelocityFieldInterpolatorPointer |
|
typedef
VectorInterpolateImageFunction
< ConstantVelocityFieldType,
ScalarType > | ConstantVelocityFieldInterpolatorType |
|
typedef
ConstantVelocityFieldType::Pointer | ConstantVelocityFieldPointer |
|
typedef Image
< OutputVectorType,
ConstantVelocityFieldDimension > | ConstantVelocityFieldType |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef Superclass::DerivativeType | DerivativeType |
|
typedef
ConstantVelocityFieldType::DirectionType | DirectionType |
|
typedef
DisplacementFieldType::Pointer | DisplacementFieldPointer |
|
typedef
Superclass::DisplacementFieldType | DisplacementFieldType |
|
typedef
ConstantVelocityFieldType::IndexType | IndexType |
|
typedef Superclass::InputPointType | InputPointType |
|
typedef
Superclass::InputVectorPixelType | InputVectorPixelType |
|
typedef Superclass::InputVectorType | InputVectorType |
|
typedef
Superclass::InverseTransformBasePointer | InverseTransformBasePointer |
|
typedef
Superclass::NumberOfParametersType | NumberOfParametersType |
|
typedef
ImageVectorOptimizerParametersHelper
< ScalarType, Dimension,
ConstantVelocityFieldDimension > | OptimizerParametersHelperType |
|
typedef Superclass::OutputPointType | OutputPointType |
|
typedef
Superclass::OutputVectorPixelType | OutputVectorPixelType |
|
typedef
Superclass::OutputVectorType | OutputVectorType |
|
typedef Superclass::ParametersType | ParametersType |
|
typedef
Superclass::ParametersValueType | ParametersValueType |
|
typedef
ConstantVelocityFieldType::PixelType | PixelType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef
ConstantVelocityFieldType::PointType | PointType |
|
typedef
ConstantVelocityFieldType::RegionType | RegionType |
|
typedef Superclass::ScalarType | ScalarType |
|
typedef
ConstantVelocityFieldTransform | Self |
|
typedef
ConstantVelocityFieldType::SizeType | SizeType |
|
typedef
ConstantVelocityFieldType::SpacingType | SpacingType |
|
typedef
DisplacementFieldTransform
< TScalar, NDimensions > | Superclass |
|
typedef
Superclass::TransformCategoryType | TransformCategoryType |
|
typedef ConstantVelocityFieldType | VelocityFieldType |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef Superclass::DerivativeType | DerivativeType |
|
typedef
DisplacementFieldType::DirectionType | DirectionType |
|
typedef
DisplacementFieldType::ConstPointer | DisplacementFieldConstPointer |
|
typedef
DisplacementFieldType::Pointer | DisplacementFieldPointer |
|
typedef Image
< OutputVectorType, Dimension > | DisplacementFieldType |
|
typedef
DisplacementFieldType::IndexType | IndexType |
|
typedef
Superclass::InputCovariantVectorType | InputCovariantVectorType |
|
typedef
Superclass::InputDiffusionTensor3DType | InputDiffusionTensor3DType |
|
typedef Superclass::InputPointType | InputPointType |
|
typedef CovariantVector
< ScalarType,
InputDiffusionTensor3DType::Dimension > | InputTensorEigenVectorType |
|
typedef
Superclass::InputVectorPixelType | InputVectorPixelType |
|
typedef Superclass::InputVectorType | InputVectorType |
|
typedef
Superclass::InputVnlVectorType | InputVnlVectorType |
|
typedef
VectorInterpolateImageFunction
< DisplacementFieldType,
ScalarType > | InterpolatorType |
|
typedef
Superclass::InverseTransformBasePointer | InverseTransformBasePointer |
|
typedef Superclass::JacobianType | JacobianType |
|
typedef
Superclass::NumberOfParametersType | NumberOfParametersType |
|
typedef
ImageVectorOptimizerParametersHelper
< ScalarType,
OutputVectorType::Dimension,
Dimension > | OptimizerParametersHelperType |
|
typedef
Superclass::OutputCovariantVectorType | OutputCovariantVectorType |
|
typedef
Superclass::OutputDiffusionTensor3DType | OutputDiffusionTensor3DType |
|
typedef Superclass::OutputPointType | OutputPointType |
|
typedef CovariantVector
< ScalarType,
OutputDiffusionTensor3DType::Dimension > | OutputTensorEigenVectorType |
|
typedef
Superclass::OutputVectorPixelType | OutputVectorPixelType |
|
typedef
Superclass::OutputVectorType | OutputVectorType |
|
typedef
Superclass::OutputVnlVectorType | OutputVnlVectorType |
|
typedef Superclass::ParametersType | ParametersType |
|
typedef
Superclass::ParametersValueType | ParametersValueType |
|
typedef
DisplacementFieldType::PixelType | PixelType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef
DisplacementFieldType::PointType | PointType |
|
typedef
DisplacementFieldType::RegionType | RegionType |
|
typedef Superclass::ScalarType | ScalarType |
|
typedef DisplacementFieldTransform | Self |
|
typedef
DisplacementFieldType::SizeType | SizeType |
|
typedef
DisplacementFieldType::SpacingType | SpacingType |
|
typedef Transform< TScalar,
NDimensions, NDimensions > | Superclass |
|
typedef
Superclass::TransformCategoryType | TransformCategoryType |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef Array
< ParametersValueType > | DerivativeType |
|
typedef Matrix< double,
itkGetStaticConstMacro(OutputSpaceDimension),
itkGetStaticConstMacro(InputSpaceDimension)> | DirectionChangeMatrix |
|
typedef CovariantVector
< TScalar, NInputDimensions > | InputCovariantVectorType |
|
typedef DiffusionTensor3D
< TScalar > | InputDiffusionTensor3DType |
|
typedef Matrix< double,
itkGetStaticConstMacro(InputSpaceDimension),
itkGetStaticConstMacro(InputSpaceDimension)> | InputDirectionMatrix |
|
typedef Point< TScalar,
NInputDimensions > | InputPointType |
|
typedef
SymmetricSecondRankTensor
< TScalar, NInputDimensions > | InputSymmetricSecondRankTensorType |
|
typedef VariableLengthVector
< TScalar > | InputVectorPixelType |
|
typedef Vector< TScalar,
NInputDimensions > | InputVectorType |
|
typedef vnl_vector_fixed
< TScalar, NInputDimensions > | InputVnlVectorType |
|
typedef
InverseTransformBaseType::Pointer | InverseTransformBasePointer |
|
typedef Transform< TScalar,
NOutputDimensions,
NInputDimensions > | InverseTransformBaseType |
|
typedef Array2D
< ParametersValueType > | JacobianType |
|
typedef Matrix< TScalar,
itkGetStaticConstMacro(OutputSpaceDimension),
itkGetStaticConstMacro(InputSpaceDimension)> | MatrixType |
|
typedef
Superclass::NumberOfParametersType | NumberOfParametersType |
|
typedef CovariantVector
< TScalar, NOutputDimensions > | OutputCovariantVectorType |
|
typedef DiffusionTensor3D
< TScalar > | OutputDiffusionTensor3DType |
|
typedef Matrix< double,
itkGetStaticConstMacro(OutputSpaceDimension),
itkGetStaticConstMacro(OutputSpaceDimension)> | OutputDirectionMatrix |
|
typedef Point< TScalar,
NOutputDimensions > | OutputPointType |
|
typedef
SymmetricSecondRankTensor
< TScalar, NOutputDimensions > | OutputSymmetricSecondRankTensorType |
|
typedef VariableLengthVector
< TScalar > | OutputVectorPixelType |
|
typedef Vector< TScalar,
NOutputDimensions > | OutputVectorType |
|
typedef vnl_vector_fixed
< TScalar, NOutputDimensions > | OutputVnlVectorType |
|
typedef Superclass::ParametersType | ParametersType |
|
typedef
Superclass::ParametersValueType | ParametersValueType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef TScalar | ScalarType |
|
typedef Transform | Self |
|
typedef TransformBaseTemplate
< TScalar > | Superclass |
|
typedef
Superclass::TransformCategoryType | TransformCategoryType |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef IdentifierType | NumberOfParametersType |
|
typedef OptimizerParameters
< ParametersValueType > | ParametersType |
|
typedef TScalar | ParametersValueType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef TransformBaseTemplate | Self |
|
typedef Object | Superclass |
|
enum | TransformCategoryType {
UnknownTransformCategory =0,
Linear =1,
BSpline =2,
Spline =3,
DisplacementField =4,
VelocityField =5
} |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef SmartPointer< Self > | Pointer |
|
typedef Object | Self |
|
typedef LightObject | Superclass |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef SmartPointer< Self > | Pointer |
|
typedef LightObject | Self |
|
|
virtual
ConstantVelocityFieldPointer | BSplineSmoothConstantVelocityField (const ConstantVelocityFieldType *, const ArrayType &) |
|
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
|
virtual const char * | GetNameOfClass () const |
|
void | SetMeshSizeForTheConstantVelocityField (const ArrayType &) |
|
void | SetMeshSizeForTheUpdateField (const ArrayType &) |
|
virtual void | UpdateTransformParameters (const DerivativeType &update, ScalarType factor=1.0) |
|
|
virtual void | SetSplineOrder (SplineOrderType _arg) |
|
virtual SplineOrderType | GetSplineOrder () const |
|
|
virtual void | SetNumberOfControlPointsForTheConstantVelocityField (ArrayType _arg) |
|
virtual ArrayType | GetNumberOfControlPointsForTheConstantVelocityField () const |
|
|
virtual void | SetNumberOfControlPointsForTheUpdateField (ArrayType _arg) |
|
virtual ArrayType | GetNumberOfControlPointsForTheUpdateField () const |
|
virtual void | CalculateNumberOfIntegrationStepsAutomaticallyOff () |
|
virtual void | CalculateNumberOfIntegrationStepsAutomaticallyOn () |
|
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
|
virtual bool | GetCalculateNumberOfIntegrationStepsAutomatically () const |
|
virtual const ModifiedTimeType & | GetConstantVelocityFieldSetTime () const |
|
bool | GetInverse (Self *inverse) const |
|
virtual InverseTransformBasePointer | GetInverseTransform () const |
|
virtual ScalarType | GetLowerTimeBound () const |
|
virtual unsigned int | GetNumberOfIntegrationSteps () const |
|
virtual ScalarType | GetUpperTimeBound () const |
|
virtual void | IntegrateVelocityField () |
|
virtual void | SetCalculateNumberOfIntegrationStepsAutomatically (bool _arg) |
|
virtual void | SetFixedParameters (const ParametersType &) |
|
virtual void | SetLowerTimeBound (ScalarType _arg) |
|
virtual void | SetNumberOfIntegrationSteps (unsigned int _arg) |
|
virtual void | SetUpperTimeBound (ScalarType _arg) |
|
virtual void | SetConstantVelocityField (ConstantVelocityFieldType *) |
|
virtual ConstantVelocityFieldType * | GetModifiableConstantVelocityField () |
|
virtual const
ConstantVelocityFieldType * | GetConstantVelocityField () const |
|
virtual void | SetConstantVelocityFieldInterpolator (ConstantVelocityFieldInterpolatorType *) |
|
virtual
ConstantVelocityFieldInterpolatorType * | GetModifiableConstantVelocityFieldInterpolator () |
|
virtual const
ConstantVelocityFieldInterpolatorType * | GetConstantVelocityFieldInterpolator () const |
|
virtual void | ComputeInverseJacobianWithRespectToPosition (const InputPointType &x, JacobianType &j) const |
|
virtual void | ComputeJacobianWithRespectToParameters (const IndexType &, JacobianType &j) const |
|
virtual void | ComputeJacobianWithRespectToPosition (const InputPointType &x, JacobianType &j) const |
|
virtual void | ComputeJacobianWithRespectToPosition (const IndexType &x, JacobianType &j) const |
|
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
|
virtual const ModifiedTimeType & | GetDisplacementFieldSetTime () const |
|
bool | GetInverse (Self *inverse) const |
|
virtual void | GetInverseJacobianOfForwardFieldWithRespectToPosition (const InputPointType &point, JacobianType &jacobian, bool useSVD=false) const |
|
virtual void | GetInverseJacobianOfForwardFieldWithRespectToPosition (const IndexType &index, JacobianType &jacobian, bool useSVD=false) const |
|
virtual NumberOfParametersType | GetNumberOfLocalParameters (void) const |
|
virtual TransformCategoryType | GetTransformCategory () const |
|
virtual OutputVectorPixelType | TransformCovariantVector (const InputVectorPixelType &) const |
|
OutputVectorPixelType | TransformDiffusionTensor (const InputVectorPixelType &) const |
|
virtual OutputPointType | TransformPoint (const InputPointType &thisPoint) const |
|
virtual OutputVectorPixelType | TransformVector (const InputVectorPixelType &) const |
|
virtual OutputVnlVectorType | TransformVector (const InputVnlVectorType &) const |
|
virtual void | UpdateTransformParameters (const DerivativeType &update, ScalarType factor=1.0) |
|
virtual void | SetDisplacementField (DisplacementFieldType *field) |
|
virtual DisplacementFieldType * | GetModifiableDisplacementField () |
|
virtual const
DisplacementFieldType * | GetDisplacementField () const |
|
virtual void | SetInverseDisplacementField (DisplacementFieldType *inverseDisplacementField) |
|
virtual DisplacementFieldType * | GetModifiableInverseDisplacementField () |
|
virtual const
DisplacementFieldType * | GetInverseDisplacementField () const |
|
virtual void | SetInterpolator (InterpolatorType *interpolator) |
|
virtual InterpolatorType * | GetModifiableInterpolator () |
|
virtual const InterpolatorType * | GetInterpolator () const |
|
virtual void | SetInverseInterpolator (InterpolatorType *interpolator) |
|
virtual InterpolatorType * | GetModifiableInverseInterpolator () |
|
virtual const InterpolatorType * | GetInverseInterpolator () const |
|
virtual OutputVectorType | TransformVector (const InputVectorType &) const |
|
OutputDiffusionTensor3DType | TransformDiffusionTensor (const InputDiffusionTensor3DType &) const |
|
virtual OutputCovariantVectorType | TransformCovariantVector (const InputCovariantVectorType &) const |
|
virtual void | SetParameters (const ParametersType ¶ms) |
|
virtual void | ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &j) const |
|
virtual void | ComputeInverseJacobianWithRespectToPosition (const InputPointType &x, JacobianType &jacobian) const |
|
virtual void | ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const =0 |
|
virtual void | ComputeJacobianWithRespectToParametersCachedTemporaries (const InputPointType &p, JacobianType &jacobian, JacobianType &) const |
|
virtual void | ComputeJacobianWithRespectToPosition (const InputPointType &, JacobianType &) const |
|
virtual const ParametersType & | GetFixedParameters (void) const |
|
unsigned int | GetInputSpaceDimension (void) const |
|
bool | GetInverse (Self *) const |
|
virtual NumberOfParametersType | GetNumberOfParameters (void) const |
|
unsigned int | GetOutputSpaceDimension (void) const |
|
virtual const ParametersType & | GetParameters (void) const |
|
virtual std::string | GetTransformTypeAsString () const |
|
virtual bool | IsLinear () const |
|
| itkCloneMacro (Self) |
|
virtual void | SetParametersByValue (const ParametersType &p) |
|
virtual OutputCovariantVectorType | TransformCovariantVector (const InputCovariantVectorType &) const |
|
virtual OutputCovariantVectorType | TransformCovariantVector (const InputCovariantVectorType &vector, const InputPointType &point) const |
|
virtual OutputVectorPixelType | TransformCovariantVector (const InputVectorPixelType &) const |
|
virtual OutputVectorPixelType | TransformCovariantVector (const InputVectorPixelType &vector, const InputPointType &point) const |
|
virtual OutputDiffusionTensor3DType | TransformDiffusionTensor3D (const InputDiffusionTensor3DType &) const |
|
virtual OutputDiffusionTensor3DType | TransformDiffusionTensor3D (const InputDiffusionTensor3DType &tensor, const InputPointType &point) const |
|
virtual OutputVectorPixelType | TransformDiffusionTensor3D (const InputVectorPixelType &) const |
|
virtual OutputVectorPixelType | TransformDiffusionTensor3D (const InputVectorPixelType &tensor, const InputPointType &point) const |
|
virtual OutputPointType | TransformPoint (const InputPointType &) const =0 |
|
virtual
OutputSymmetricSecondRankTensorType | TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &tensor, const InputPointType &point) const |
|
virtual
OutputSymmetricSecondRankTensorType | TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &) const |
|
virtual OutputVectorPixelType | TransformSymmetricSecondRankTensor (const InputVectorPixelType &) const |
|
virtual OutputVectorPixelType | TransformSymmetricSecondRankTensor (const InputVectorPixelType &tensor, const InputPointType &point) const |
|
virtual OutputVectorType | TransformVector (const InputVectorType &) const |
|
virtual OutputVectorType | TransformVector (const InputVectorType &vector, const InputPointType &point) const |
|
virtual OutputVnlVectorType | TransformVector (const InputVnlVectorType &) const |
|
virtual OutputVnlVectorType | TransformVector (const InputVnlVectorType &vector, const InputPointType &point) const |
|
virtual OutputVectorPixelType | TransformVector (const InputVectorPixelType &) const |
|
virtual OutputVectorPixelType | TransformVector (const InputVectorPixelType &vector, const InputPointType &point) const |
|
virtual void | UpdateTransformParameters (const DerivativeType &update, TScalar factor=1.0) |
|
unsigned long | AddObserver (const EventObject &event, Command *) |
|
unsigned long | AddObserver (const EventObject &event, Command *) const |
|
virtual void | DebugOff () const |
|
virtual void | DebugOn () const |
|
Command * | GetCommand (unsigned long tag) |
|
bool | GetDebug () const |
|
MetaDataDictionary & | GetMetaDataDictionary (void) |
|
const MetaDataDictionary & | GetMetaDataDictionary (void) const |
|
virtual ModifiedTimeType | GetMTime () const |
|
virtual const TimeStamp & | GetTimeStamp () const |
|
bool | HasObserver (const EventObject &event) const |
|
void | InvokeEvent (const EventObject &) |
|
void | InvokeEvent (const EventObject &) const |
|
virtual void | Modified () const |
|
virtual void | Register () const ITK_OVERRIDE |
|
void | RemoveAllObservers () |
|
void | RemoveObserver (unsigned long tag) |
|
void | SetDebug (bool debugFlag) const |
|
void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
|
virtual void | SetReferenceCount (int) ITK_OVERRIDE |
|
virtual void | UnRegister () const ITK_OVERRIDE |
|
virtual void | SetObjectName (std::string _arg) |
|
virtual const std::string & | GetObjectName () const |
|
virtual void | Delete () |
|
virtual int | GetReferenceCount () const |
|
| itkCloneMacro (Self) |
|
void | Print (std::ostream &os, Indent indent=0) const |
|