#include <itkCompareHistogramImageToImageMetric.h>

Inheritance diagram for itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >:

Collaboration diagram for itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >:

Detailed Description

template<typename TFixedImage, typename TMovingImage>
class itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >

Compares Histograms between two images to be registered to a Training Histogram.

This class is templated over the type of the fixed and moving images to be compared.

This metric computes the similarity between the histogram produced by two images overlapping and a training histogram.

It is to be sub-classed by the method of comparing the histograms.

Generally, the histogram from the training data is to be computed in exactly the same way as the histogram from the images to be compared are computed. Thus, the user can set the interpolator, region, two training images and the transfrom and the training histogram will be formed. OR, the user can simply calculate the training histogram separately and set it.

Warning: The Initialize function does nothing if the training histogram already exists. Thus repeated calls to the Initialize function do nothing after the first call. If you wish the training histogram to be re-calculated, you should set it to 0.

Author: Samson Timoner.

Definition at line 56 of file itkCompareHistogramImageToImageMetric.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef Superclass::FixedImageRegionType	FixedImageRegionType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef HistogramType::AbsoluteFrequencyType	HistogramAbsoluteFrequencyType

typedef HistogramAbsoluteFrequencyType	HistogramFrequencyType

typedef HistogramType::Iterator	HistogramIteratorType

typedef HistogramType::MeasurementVectorType	HistogramMeasurementVectorType

typedef HistogramType::Pointer	HistogramPointerType

typedef Superclass::HistogramSizeType	HistogramSizeType

typedef Superclass::HistogramType	HistogramType

typedef Superclass::InterpolatorPointer	InterpolatorPointer

typedef Superclass::InterpolatorType	InterpolatorType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef Superclass::MovingImageType	MovingImageType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RealType	RealType

typedef CompareHistogramImageToImageMetric	Self

typedef HistogramImageToImageMetric < TFixedImage, TMovingImage >	Superclass

typedef TransformType::ConstPointer	TransformConstPointer

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

Public Types inherited from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointerType

typedef Superclass::FixedImageType::PixelType	FixedImagePixelType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef HistogramType::Pointer	HistogramPointer

typedef HistogramType::SizeType	HistogramSizeType

typedef Statistics::Histogram < double >	HistogramType

typedef Superclass::InputPointType	InputPointType

typedef HistogramType::MeasurementVectorType	MeasurementVectorType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointerType

typedef Superclass::MovingImageType::PixelType	MovingImagePixelType

typedef Superclass::MovingImageType	MovingImageType

typedef Superclass::OutputPointType	OutputPointType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RealType	RealType

typedef Array< double >	ScalesType

typedef HistogramImageToImageMetric	Self

typedef ImageToImageMetric < TFixedImage, TMovingImage >	Superclass

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

Public Types inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::ParametersValueType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef FixedImageType::ConstPointer	FixedImageConstPointer

typedef std::vector < FixedImageIndexType >	FixedImageIndexContainer

typedef FixedImageType::IndexType	FixedImageIndexType

typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType

typedef FixedImageMaskType::ConstPointer	FixedImageMaskConstPointer

typedef FixedImageMaskType::Pointer	FixedImageMaskPointer

typedef SpatialObject < itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskType

typedef TFixedImage::PixelType	FixedImagePixelType

typedef TransformType::InputPointType	FixedImagePointType

typedef FixedImageType::RegionType	FixedImageRegionType

typedef TFixedImage	FixedImageType

typedef TransformType::InputPointType	InputPointType

typedef InterpolatorType::Pointer	InterpolatorPointer

typedef InterpolateImageFunction < MovingImageType, CoordinateRepresentationType >	InterpolatorType

typedef Superclass::MeasureType	MeasureType

typedef MovingImageType::ConstPointer	MovingImageConstPointer

typedef MovingImageType::IndexType	MovingImageIndexType

typedef MovingImageMaskType::ConstPointer	MovingImageMaskConstPointer

typedef MovingImageMaskType::Pointer	MovingImageMaskPointer

typedef SpatialObject < itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskType

typedef TMovingImage::PixelType	MovingImagePixelType

typedef TransformType::OutputPointType	MovingImagePointType

typedef TMovingImage	MovingImageType

typedef MultiThreader	MultiThreaderType

typedef TransformType::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef ImageToImageMetric	Self

typedef SingleValuedCostFunction	Superclass

typedef TransformType::JacobianType	TransformJacobianType

typedef TransformType::ParametersType	TransformParametersType

typedef TransformType::Pointer	TransformPointer

typedef Transform < CoordinateRepresentationType, itkGetStaticConstMacro(MovingImageDimension), itkGetStaticConstMacro(FixedImageDimension) >	TransformType

typedef NumericTraits < MovingImagePixelType > ::RealType	RealType

typedef CovariantVector < RealType, itkGetStaticConstMacro(MovingImageDimension) >	GradientPixelType

typedef Image < GradientPixelType, itkGetStaticConstMacro(MovingImageDimension) >	GradientImageType

typedef SmartPointer < GradientImageType >	GradientImagePointer

typedef GradientRecursiveGaussianImageFilter < MovingImageType, GradientImageType >	GradientImageFilterType

typedef GradientImageFilterType::Pointer	GradientImageFilterPointer

Public Types inherited from itk::SingleValuedCostFunction
typedef SmartPointer< const Self >	ConstPointer

typedef Array < ParametersValueType >	DerivativeType

typedef double	MeasureType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef SingleValuedCostFunction	Self

typedef CostFunction	Superclass

Public Types inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
typedef SmartPointer< const Self >	ConstPointer

typedef OptimizerParameters < TInternalComputationValueType >	ParametersType

typedef TInternalComputationValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef CostFunctionTemplate	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual const char *	GetNameOfClass () const

unsigned int	GetNumberOfParameters (void) const

void	Initialize () throw ( ExceptionObject )

virtual void	SetTrainingFixedImage (const FixedImageType *_arg)


virtual void	SetTrainingHistogram (HistogramPointerType _arg)

virtual const HistogramPointerType &	GetTrainingHistogram () const


virtual void	SetTrainingMovingImage (const MovingImageType *_arg)

virtual const MovingImageType *	GetTrainingMovingImage () const


virtual void	SetTrainingTransform (TransformType *_arg)

virtual TransformType *	GetModifiableTrainingTransform ()

virtual const TransformType *	GetTrainingTransform () const


virtual void	SetTrainingInterpolator (InterpolatorType *_arg)

virtual InterpolatorType *	GetModifiableTrainingInterpolator ()

virtual const InterpolatorType *	GetTrainingInterpolator () const


virtual void	SetTrainingFixedImageRegion (FixedImageRegionType _arg)

virtual const FixedImageRegionType &	GetTrainingFixedImageRegion () const

Public Member Functions inherited from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >
void	GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const

virtual double	GetDerivativeStepLength () const

virtual const ScalesType &	GetDerivativeStepLengthScales () const

virtual const HistogramPointer &	GetHistogram () const

virtual const HistogramSizeType &	GetHistogramSize () const

const MeasurementVectorType &	GetLowerBound () const

virtual const FixedImagePixelType &	GetPaddingValue () const

const MeasurementVectorType &	GetUpperBound () const

MeasureType	GetValue (const TransformParametersType &parameters) const

void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const

void	Initialize () throw ( ExceptionObject )

virtual void	SetDerivativeStepLength (double _arg)

virtual void	SetDerivativeStepLengthScales (ScalesType _arg)

virtual void	SetHistogramSize (HistogramSizeType _arg)

void	SetLowerBound (const MeasurementVectorType &bound)

virtual void	SetPaddingValue (FixedImagePixelType _arg)

void	SetTransform (TransformType *transform)

void	SetUpperBound (const MeasurementVectorType &bound)

virtual void	SetUpperBoundIncreaseFactor (double _arg)

virtual double	GetUpperBoundIncreaseFactor () const

virtual void	SetUsePaddingValue (bool _arg)

virtual bool	GetUsePaddingValue () const

Public Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
virtual void	ComputeGradient (void)

virtual const FixedImageRegionType &	GetFixedImageRegion () const

virtual const FixedImagePixelType &	GetFixedImageSamplesIntensityThreshold () const

virtual const GradientImageType *	GetGradientImage () const

virtual const InterpolatorType *	GetInterpolator () const

virtual GradientImageType *	GetModifiableGradientImage ()

virtual InterpolatorType *	GetModifiableInterpolator ()

virtual TransformType *	GetModifiableTransform ()

SizeValueType	GetNumberOfMovingImageSamples (void)

virtual const SizeValueType &	GetNumberOfPixelsCounted () const

SizeValueType	GetNumberOfSpatialSamples (void)

virtual const TransformType *	GetTransform () const

virtual const bool &	GetUseAllPixels () const

virtual const bool &	GetUseFixedImageIndexes () const

virtual const bool &	GetUseFixedImageSamplesIntensityThreshold () const

virtual const bool &	GetUseSequentialSampling () const

virtual void	MultiThreadingInitialize (void) throw ( ExceptionObject )

void	SetFixedImageIndexes (const FixedImageIndexContainer &indexes)

virtual void	SetFixedImageRegion (const FixedImageRegionType reg)

void	SetFixedImageSamplesIntensityThreshold (const FixedImagePixelType &thresh)

virtual void	SetInterpolator (InterpolatorType *_arg)

void	SetNumberOfSpatialSamples (SizeValueType num)

virtual void	SetTransform (TransformType *_arg)

void	SetTransformParameters (const ParametersType &parameters) const

void	SetUseAllPixels (bool useAllPixels)

void	SetUseFixedImageIndexes (bool useIndex)

void	SetUseFixedImageSamplesIntensityThreshold (bool useThresh)

void	SetUseSequentialSampling (bool sequentialSampling)

void	UseAllPixelsOff (void)

void	UseAllPixelsOn (void)

virtual void	SetFixedImage (const FixedImageType *_arg)

virtual const FixedImageType *	GetFixedImage () const

virtual void	SetMovingImage (const MovingImageType *_arg)

virtual const MovingImageType *	GetMovingImage () const

virtual void	SetMovingImageMask (MovingImageMaskType *_arg)

virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)

virtual const MovingImageMaskType *	GetMovingImageMask () const

virtual void	SetFixedImageMask (FixedImageMaskType *_arg)

virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)

virtual const FixedImageMaskType *	GetFixedImageMask () const

void	SetNumberOfThreads (ThreadIdType numberOfThreads)

virtual const ThreadIdType &	GetNumberOfThreads () const

virtual void	SetComputeGradient (bool _arg)

virtual const bool &	GetComputeGradient () const

virtual void	ComputeGradientOn ()

virtual void	ComputeGradientOff ()

virtual void	SetNumberOfFixedImageSamples (SizeValueType numSamples)

virtual const SizeValueType &	GetNumberOfFixedImageSamples () const

void	ReinitializeSeed ()

void	ReinitializeSeed (int seed)

virtual void	SetUseCachingOfBSplineWeights (bool _arg)

virtual const bool &	GetUseCachingOfBSplineWeights () const

virtual void	UseCachingOfBSplineWeightsOn ()

virtual void	UseCachingOfBSplineWeightsOff ()

virtual MultiThreaderType *	GetModifiableThreader ()

virtual const MultiThreaderType *	GetThreader () const

const TransformPointer *	GetThreaderTransform ()

Public Member Functions inherited from itk::SingleValuedCostFunction
virtual void	GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const =0

virtual MeasureType	GetValue (const ParametersType &parameters) const =0

virtual void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual LightObject::Pointer	CreateAnother () const ITK_OVERRIDE

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary (void)

const MetaDataDictionary &	GetMetaDataDictionary (void) const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const ITK_OVERRIDE

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int) ITK_OVERRIDE

virtual void	UnRegister () const ITK_OVERRIDE

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Protected Member Functions
virtual MeasureType	EvaluateMeasure (HistogramType &histogram) const =0

void	FormTrainingHistogram () throw ( ExceptionObject )


	CompareHistogramImageToImageMetric ()

virtual	~CompareHistogramImageToImageMetric ()

void	PrintSelf (std::ostream &os, Indent indent) const

Protected Member Functions inherited from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >
void	ComputeHistogram (const TransformParametersType &parameters, HistogramType &histogram) const

void	ComputeHistogram (const TransformParametersType &parameters, unsigned int parameter, double step, HistogramType &histogram) const

void	CopyHistogram (HistogramType &target, HistogramType &source) const

virtual MeasureType	EvaluateMeasure (HistogramType &histogram) const =0

	HistogramImageToImageMetric ()

void	PrintSelf (std::ostream &os, Indent indent) const

virtual	~HistogramImageToImageMetric ()

Protected Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
virtual void	ComputeImageDerivatives (const MovingImagePointType &mappedPoint, ImageDerivativesType &gradient, ThreadIdType threadId) const

void	GetValueAndDerivativeMultiThreadedInitiate (void) const

void	GetValueAndDerivativeMultiThreadedPostProcessInitiate (void) const

void	GetValueAndDerivativeMultiThreadedPreProcessInitiate (void) const

virtual void	GetValueAndDerivativeThread (ThreadIdType threadId) const

virtual void	GetValueAndDerivativeThreadPostProcess (ThreadIdType, bool) const

virtual void	GetValueAndDerivativeThreadPreProcess (ThreadIdType, bool) const

virtual bool	GetValueAndDerivativeThreadProcessSample (ThreadIdType, SizeValueType, const MovingImagePointType &, double, const ImageDerivativesType &) const

void	GetValueMultiThreadedInitiate (void) const

void	GetValueMultiThreadedPostProcessInitiate (void) const

void	GetValueMultiThreadedPreProcessInitiate (void) const

virtual void	GetValueThread (ThreadIdType threadId) const

virtual void	GetValueThreadPostProcess (ThreadIdType, bool) const

virtual void	GetValueThreadPreProcess (ThreadIdType, bool) const

virtual bool	GetValueThreadProcessSample (ThreadIdType, SizeValueType, const MovingImagePointType &, double) const

	ImageToImageMetric ()

virtual void	PreComputeTransformValues (void)

virtual void	SampleFixedImageIndexes (FixedImageSampleContainer &samples) const

virtual void	SampleFixedImageRegion (FixedImageSampleContainer &samples) const

virtual void	SampleFullFixedImageRegion (FixedImageSampleContainer &samples) const

virtual void	SynchronizeTransforms () const

virtual void	TransformPoint (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleWithinSupportRegion, double &movingImageValue, ThreadIdType threadId) const

virtual void	TransformPointWithDerivatives (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleWithinSupportRegion, double &movingImageValue, ImageDerivativesType &gradient, ThreadIdType threadId) const

virtual	~ImageToImageMetric ()

Protected Member Functions inherited from itk::SingleValuedCostFunction
	SingleValuedCostFunction ()

virtual	~SingleValuedCostFunction ()

Protected Member Functions inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
	CostFunctionTemplate ()

virtual	~CostFunctionTemplate ()

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Member Functions
	CompareHistogramImageToImageMetric (Self const &)

void	operator= (Self const &)

Private Attributes
FixedImageConstPointer	m_TrainingFixedImage

FixedImageRegionType	m_TrainingFixedImageRegion

HistogramPointerType	m_TrainingHistogram

InterpolatorPointer	m_TrainingInterpolator

MovingImageConstPointer	m_TrainingMovingImage

TransformPointer	m_TrainingTransform

Additional Inherited Members
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Public Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static const unsigned int	MovingImageDimension = TMovingImage::ImageDimension

static const unsigned int	FixedImageDimension = TFixedImage::ImageDimension

Protected Types inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
typedef std::vector< bool >	BooleanArrayType

typedef BSplineInterpolateImageFunction < MovingImageType, CoordinateRepresentationType >	BSplineInterpolatorType

typedef FixedArray < SizeValueType, FixedImageType::ImageDimension >	BSplineParametersOffsetType

typedef BSplineTransformType::ParameterIndexArrayType	BSplineTransformIndexArrayType

typedef Array2D< IndexValueType >	BSplineTransformIndicesArrayType

typedef BSplineBaseTransform < CoordinateRepresentationType, FixedImageType::ImageDimension, itkGetStaticConstMacro(DeformationSplineOrder) >	BSplineTransformType

typedef Array2D< WeightsValueType >	BSplineTransformWeightsArrayType

typedef BSplineTransformType::WeightsType	BSplineTransformWeightsType

typedef CentralDifferenceImageFunction < MovingImageType, CoordinateRepresentationType >	DerivativeFunctionType

typedef std::vector < FixedImageSamplePoint >	FixedImageSampleContainer

typedef CovariantVector < double, itkGetStaticConstMacro(MovingImageDimension) >	ImageDerivativesType

typedef BSplineTransformIndexArrayType::ValueType	IndexValueType

typedef std::vector < MovingImagePointType >	MovingImagePointArrayType

typedef BSplineTransformWeightsType::ValueType	WeightsValueType

Protected Types inherited from itk::LightObject
typedef int	InternalReferenceCountType

Static Protected Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeMultiThreaded (void *arg)

static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeMultiThreadedPostProcess (void *arg)

static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeMultiThreadedPreProcess (void *arg)

static ITK_THREAD_RETURN_TYPE	GetValueMultiThreaded (void *arg)

static ITK_THREAD_RETURN_TYPE	GetValueMultiThreadedPostProcess (void *arg)

static ITK_THREAD_RETURN_TYPE	GetValueMultiThreadedPreProcess (void *arg)

Protected Attributes inherited from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >
HistogramSizeType	m_HistogramSize

MeasurementVectorType	m_LowerBound

bool	m_LowerBoundSetByUser

MeasurementVectorType	m_UpperBound

double	m_UpperBoundIncreaseFactor

bool	m_UpperBoundSetByUser

Protected Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
BSplineInterpolatorType::Pointer	m_BSplineInterpolator

BSplineParametersOffsetType	m_BSplineParametersOffset

MovingImagePointArrayType	m_BSplinePreTransformPointsArray

BSplineTransformType::Pointer	m_BSplineTransform

BSplineTransformIndexArrayType	m_BSplineTransformIndices

BSplineTransformIndicesArrayType	m_BSplineTransformIndicesArray

BSplineTransformWeightsType	m_BSplineTransformWeights

BSplineTransformWeightsArrayType	m_BSplineTransformWeightsArray

bool	m_ComputeGradient

DerivativeFunctionType::Pointer	m_DerivativeCalculator

FixedImageConstPointer	m_FixedImage

FixedImageIndexContainer	m_FixedImageIndexes

FixedImageMaskConstPointer	m_FixedImageMask

FixedImageSampleContainer	m_FixedImageSamples

FixedImagePixelType	m_FixedImageSamplesIntensityThreshold

GradientImagePointer	m_GradientImage

InterpolatorPointer	m_Interpolator

bool	m_InterpolatorIsBSpline

MovingImageConstPointer	m_MovingImage

MovingImageMaskConstPointer	m_MovingImageMask

SizeValueType	m_NumberOfFixedImageSamples

SizeValueType	m_NumberOfParameters

SizeValueType	m_NumberOfPixelsCounted

ThreadIdType	m_NumberOfThreads

SizeValueType	m_NumBSplineWeights

int	m_RandomSeed

bool	m_ReseedIterator

MultiThreaderType::Pointer	m_Threader

BSplineTransformIndexArrayType *	m_ThreaderBSplineTransformIndices

BSplineTransformWeightsType *	m_ThreaderBSplineTransformWeights

unsigned int *	m_ThreaderNumberOfMovingImageSamples

MultiThreaderParameterType	m_ThreaderParameter

TransformPointer *	m_ThreaderTransform

TransformPointer	m_Transform

bool	m_TransformIsBSpline

bool	m_UseAllPixels

bool	m_UseCachingOfBSplineWeights

bool	m_UseFixedImageIndexes

bool	m_UseFixedImageSamplesIntensityThreshold

bool	m_UseSequentialSampling

BooleanArrayType	m_WithinBSplineSupportRegionArray

bool	m_WithinThreadPostProcess

bool	m_WithinThreadPreProcess

Protected Attributes inherited from itk::LightObject
InternalReferenceCountType	m_ReferenceCount

SimpleFastMutexLock	m_ReferenceCountLock

Static Protected Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static const unsigned int	DeformationSplineOrder = 3

Member Typedef Documentation

template<typename TFixedImage , typename TMovingImage >

typedef SmartPointer< const Self > itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer

Definition at line 64 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::DerivativeType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::DerivativeType

Definition at line 81 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::FixedImageConstPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointer

Definition at line 84 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::FixedImageRegionType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionType

Definition at line 101 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::FixedImageType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageType

Definition at line 82 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::GradientPixelType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GradientPixelType

Definition at line 78 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef HistogramType::AbsoluteFrequencyType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramAbsoluteFrequencyType

Definition at line 91 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef HistogramAbsoluteFrequencyType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramFrequencyType

Definition at line 92 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef HistogramType::Iterator itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramIteratorType

Definition at line 94 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef HistogramType::MeasurementVectorType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramMeasurementVectorType

Definition at line 90 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef HistogramType::Pointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramPointerType

Definition at line 95 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::HistogramSizeType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramSizeType

Definition at line 89 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::HistogramType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramType

Definition at line 88 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::InterpolatorPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorPointer

Definition at line 98 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::InterpolatorType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType

Definition at line 97 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::MeasureType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::MeasureType

Definition at line 80 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::MovingImageConstPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointer

Definition at line 86 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::MovingImageType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageType

Definition at line 83 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef SmartPointer< Self > itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Pointer

Definition at line 63 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::RealType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::RealType

Types transferred from the base class

Definition at line 68 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef CompareHistogramImageToImageMetric itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Self

Standard class typedefs.

Definition at line 61 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef HistogramImageToImageMetric< TFixedImage, TMovingImage > itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Superclass

Definition at line 62 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef TransformType::ConstPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformConstPointer

Definition at line 74 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::TransformJacobianType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianType

Definition at line 77 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::TransformParametersType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformParametersType

Definition at line 76 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::TransformPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformPointer

Definition at line 73 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::TransformType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformType

Definition at line 72 of file itkCompareHistogramImageToImageMetric.h.

Constructor & Destructor Documentation

template<typename TFixedImage , typename TMovingImage >

itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::CompareHistogramImageToImageMetric ( )

protected

Constructor is protected to ensure that New() function is used to create instances.

template<typename TFixedImage , typename TMovingImage >

virtual itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::~CompareHistogramImageToImageMetric ( )

inlineprotectedvirtual

Constructor is protected to ensure that New() function is used to create instances.

Definition at line 144 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::CompareHistogramImageToImageMetric ( Self const & )

private

Member Function Documentation

template<typename TFixedImage , typename TMovingImage >

virtual MeasureType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::EvaluateMeasure ( HistogramType & histogram ) const

protectedpure virtual

Evaluates the comparison histogram metric. All sub-classes must re-implement method.

Implemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FormTrainingHistogram	(		)
throw	(	ExceptionObject
	)

protected

Form the Histogram for the Training data

template<typename TFixedImage , typename TMovingImage >

virtual InterpolatorType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetModifiableTrainingInterpolator ( )

virtual

Get/Set the Interpolator.

template<typename TFixedImage , typename TMovingImage >

virtual TransformType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetModifiableTrainingTransform ( )

virtual

Get/Set the Training Transform.

template<typename TFixedImage , typename TMovingImage >

virtual const char* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

unsigned int itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfParameters ( void ) const

inlinevirtual

Return the number of parameters required by the Transform

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 132 of file itkCompareHistogramImageToImageMetric.h.

References itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNumberOfParameters(), and itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetTransform().

template<typename TFixedImage , typename TMovingImage >

virtual const FixedImageRegionType& itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingFixedImageRegion ( ) const

virtual

Get/Set the region over which the training histogram will be computed

template<typename TFixedImage , typename TMovingImage >

virtual const HistogramPointerType& itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingHistogram ( ) const

virtual

Get/Set the histogram to be used in the metric calculation

template<typename TFixedImage , typename TMovingImage >

virtual const InterpolatorType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingInterpolator ( ) const

virtual

Get/Set the Interpolator.

template<typename TFixedImage , typename TMovingImage >

virtual const MovingImageType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingMovingImage ( ) const

virtual

Get/Set the Training Moving Image.

template<typename TFixedImage , typename TMovingImage >

virtual const TransformType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingTransform ( ) const

virtual

Get/Set the Training Transform.

template<typename TFixedImage , typename TMovingImage >

void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Initialize	(		)
throw	(	ExceptionObject
	)

virtual

Forms the histogram of the training images to prepare to evaluate the metric. Must set all parameters first.

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::operator= ( Self const & )

private

template<typename TFixedImage , typename TMovingImage >

void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

Constructor is protected to ensure that New() function is used to create instances.

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingFixedImage ( const FixedImageType * _arg )

virtual

Get/Set the Training Fixed Image.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingFixedImageRegion ( FixedImageRegionType _arg )

virtual

Get/Set the region over which the training histogram will be computed

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingHistogram ( HistogramPointerType _arg )

virtual

Get/Set the histogram to be used in the metric calculation

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingInterpolator ( InterpolatorType * _arg )

virtual

Get/Set the Interpolator.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingMovingImage ( const MovingImageType * _arg )

virtual

Get/Set the Training Moving Image.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingTransform ( TransformType * _arg )

virtual

Get/Set the Training Transform.

Member Data Documentation

template<typename TFixedImage , typename TMovingImage >

FixedImageConstPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingFixedImage

private

Definition at line 161 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

FixedImageRegionType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingFixedImageRegion

private

Definition at line 165 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

HistogramPointerType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingHistogram

private

Definition at line 166 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

InterpolatorPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingInterpolator

private

Definition at line 164 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

MovingImageConstPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingMovingImage

private

Definition at line 162 of file itkCompareHistogramImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

TransformPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingTransform

private

Definition at line 163 of file itkCompareHistogramImageToImageMetric.h.

The documentation for this class was generated from the following file:

itkCompareHistogramImageToImageMetric.h

Detailed Description

template<typename TFixedImage, typename TMovingImage> class itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >

Public Types

Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<typename TFixedImage, typename TMovingImage>
class itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >