template<typename TLevelSet, typename TSpeedImage = Image< float, TLevelSet ::ImageDimension >>
class itk::FastMarchingUpwindGradientImageFilter< TLevelSet, TSpeedImage >
Generates the upwind gradient field of fast marching arrival times.
This filter adds some extra functionality to its base class. While the solution T(x) of the Eikonal equation is being generated by the base class with the fast marching method, the filter generates the upwind gradient vectors of T(x), storing them in an image.
Since the Eikonal equation generates the arrival times of a wave travelling at a given speed, the generated gradient vectors can be interpreted as the slowness (1/velocity) vectors of the front (the quantity inside the modulus operator in the Eikonal equation).
Gradient vectors are computed using upwind finite differences, that is, information only propagates from points where the wavefront has already passed. This is consistent with how the fast marching method works.
One more extra feature is the possibility to define a set of Target points where the propagation stops. This can be used to avoid computing the Eikonal solution for the whole domain. The front can be stopped either when one Target point is reached or all Target points are reached. The propagation can stop after a time TargetOffset has passed since the stop condition is met. This way the solution is computed a bit downstream the Target points, so that the level sets of T(x) corresponding to the Target are smooth.
- Author
- Luca Antiga Ph.D. Biomedical Technologies Laboratory, Bioengineering Department, Mario Negri Institute, Italy.
Definition at line 61 of file itkFastMarchingUpwindGradientImageFilter.h.
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enum | {
NoTargets,
OneTarget,
SomeTargets,
AllTargets
} |
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typedef Superclass::AxisNodeType | AxisNodeType |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef GradientImageType::Pointer | GradientImagePointer |
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typedef Image
< GradientPixelType,
itkGetStaticConstMacro(SetDimension) > | GradientImageType |
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typedef CovariantVector
< PixelType,
itkGetStaticConstMacro(SetDimension) > | GradientPixelType |
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typedef Superclass::IndexType | IndexType |
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typedef Superclass::LabelImageType | LabelImageType |
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typedef
Superclass::LevelSetImageType | LevelSetImageType |
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typedef
Superclass::LevelSetIndexType | LevelSetIndexType |
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typedef Superclass::LevelSetPointer | LevelSetPointer |
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typedef Superclass::LevelSetType | LevelSetType |
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typedef Superclass::NodeContainer | NodeContainer |
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typedef
Superclass::NodeContainerPointer | NodeContainerPointer |
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typedef Superclass::NodeType | NodeType |
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typedef
Superclass::OutputSpacingType | OutputSpacingType |
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typedef Superclass::PixelType | PixelType |
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typedef SmartPointer< Self > | Pointer |
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typedef Superclass::OutputPointType | PointType |
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typedef
FastMarchingUpwindGradientImageFilter | Self |
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typedef
Superclass::SpeedImageConstPointer | SpeedImageConstPointer |
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typedef Superclass::SpeedImageType | SpeedImageType |
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typedef
FastMarchingImageFilter
< TLevelSet, TSpeedImage > | Superclass |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef Index
< itkGetStaticConstMacro(SetDimension) > | IndexType |
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typedef LabelImageType::Pointer | LabelImagePointer |
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typedef Image< unsigned char,
itkGetStaticConstMacro(SetDimension) > | LabelImageType |
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enum | LabelType {
FarPoint = 0,
AlivePoint,
TrialPoint,
InitialTrialPoint,
OutsidePoint
} |
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typedef
LevelSetType::LevelSetImageType | LevelSetImageType |
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typedef
LevelSetType::LevelSetPointer | LevelSetPointer |
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typedef LevelSetTypeDefault
< TLevelSet > | LevelSetType |
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typedef LevelSetType::NodeContainer | NodeContainer |
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typedef
LevelSetType::NodeContainerPointer | NodeContainerPointer |
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typedef NodeType::IndexType | NodeIndexType |
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typedef LevelSetType::NodeType | NodeType |
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typedef
LevelSetImageType::DirectionType | OutputDirectionType |
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typedef
LevelSetImageType::PointType | OutputPointType |
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typedef
LevelSetImageType::RegionType | OutputRegionType |
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typedef LevelSetImageType::SizeType | OutputSizeType |
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typedef
LevelSetImageType::SpacingType | OutputSpacingType |
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typedef LevelSetType::PixelType | PixelType |
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typedef SmartPointer< Self > | Pointer |
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typedef FastMarchingImageFilter | Self |
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typedef
SpeedImageType::ConstPointer | SpeedImageConstPointer |
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typedef SpeedImageType::Pointer | SpeedImagePointer |
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typedef TSpeedImage | SpeedImageType |
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typedef ImageSource< TLevelSet > | Superclass |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef
InputImageType::ConstPointer | InputImageConstPointer |
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typedef InputImageType::PixelType | InputImagePixelType |
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typedef InputImageType::Pointer | InputImagePointer |
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typedef InputImageType::RegionType | InputImageRegionType |
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typedef TSpeedImage | InputImageType |
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typedef
Superclass::OutputImagePixelType | OutputImagePixelType |
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typedef
Superclass::OutputImageRegionType | OutputImageRegionType |
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typedef SmartPointer< Self > | Pointer |
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typedef ImageToImageFilter | Self |
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typedef ImageSource< TLevelSet > | Superclass |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef
Superclass::DataObjectIdentifierType | DataObjectIdentifierType |
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typedef DataObject::Pointer | DataObjectPointer |
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typedef
Superclass::DataObjectPointerArraySizeType | DataObjectPointerArraySizeType |
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typedef OutputImageType::PixelType | OutputImagePixelType |
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typedef OutputImageType::Pointer | OutputImagePointer |
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typedef OutputImageType::RegionType | OutputImageRegionType |
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typedef TLevelSet | OutputImageType |
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typedef SmartPointer< Self > | Pointer |
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typedef ImageSource | Self |
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typedef ProcessObject | Superclass |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef
DataObject::DataObjectIdentifierType | DataObjectIdentifierType |
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typedef DataObject::Pointer | DataObjectPointer |
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typedef std::vector
< DataObjectPointer > | DataObjectPointerArray |
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typedef
DataObjectPointerArray::size_type | DataObjectPointerArraySizeType |
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typedef std::vector
< DataObjectIdentifierType > | NameArray |
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typedef SmartPointer< Self > | Pointer |
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typedef ProcessObject | Self |
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typedef Object | Superclass |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef SmartPointer< Self > | Pointer |
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typedef Object | Self |
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typedef LightObject | Superclass |
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typedef SmartPointer< const Self > | ConstPointer |
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typedef SmartPointer< Self > | Pointer |
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typedef LightObject | Self |
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virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
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GradientImagePointer | GetGradientImage () const |
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virtual const char * | GetNameOfClass () const |
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virtual const SizeValueType & | GetNumberOfTargets () const |
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NodeContainerPointer | GetReachedTargetPoints () |
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virtual const double & | GetTargetOffset () const |
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NodeContainerPointer | GetTargetPoints () |
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virtual const double & | GetTargetValue () const |
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virtual void | SetGenerateGradientImage (bool _arg) |
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virtual void | SetTargetOffset (double _arg) |
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void | SetTargetReachedModeToAllTargets () |
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| typedef (Concept::DivisionOperators< typename TLevelSet::PixelType, double >) LevelSetDoubleDivisionOperatorsCheck |
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| typedef (Concept::DivisionAndAssignOperators< typename TLevelSet::PixelType, double >) LevelSetDoubleDivisionAndAssignOperatorsCheck |
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void | SetTargetPoints (NodeContainer *points) |
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virtual const bool & | GetGenerateGradientImage () const |
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virtual void | GenerateGradientImageOn () |
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virtual void | GenerateGradientImageOff () |
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virtual void | SetTargetReachedMode (int _arg) |
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virtual const int & | GetTargetReachedMode () const |
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void | SetTargetReachedModeToNoTargets () |
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void | SetTargetReachedModeToOneTarget () |
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void | SetTargetReachedModeToSomeTargets (SizeValueType numberOfTargets) |
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NodeContainerPointer | GetAlivePoints () |
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LabelImagePointer | GetLabelImage () const |
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NodeContainerPointer | GetProcessedPoints () const |
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virtual const double & | GetSpeedConstant () const |
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virtual const double & | GetStoppingValue () const |
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NodeContainerPointer | GetTrialPoints () |
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template<typename TPixel > |
void | SetBinaryMask (Image< TPixel, SetDimension > *iImage) |
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virtual void | SetCollectPoints (bool _arg) |
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virtual void | SetStoppingValue (double _arg) |
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| typedef (Concept::SameDimension< SetDimension, SpeedImageDimension >) SameDimensionCheck |
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| typedef (Concept::Convertible< typename TSpeedImage::PixelType, double >) SpeedConvertibleToDoubleCheck |
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| typedef (Concept::Convertible< double, PixelType >) DoubleConvertibleToLevelSetCheck |
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| typedef (Concept::OStreamWritable< PixelType >) LevelSetOStreamWritableCheck |
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void | SetOutsidePoints (NodeContainer *points) |
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void | SetAlivePoints (NodeContainer *points) |
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void | SetTrialPoints (NodeContainer *points) |
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void | SetSpeedConstant (double value) |
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virtual void | SetNormalizationFactor (double _arg) |
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virtual double | GetNormalizationFactor () const |
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virtual const bool & | GetCollectPoints () const |
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virtual void | CollectPointsOn () |
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virtual void | CollectPointsOff () |
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virtual void | SetOutputSize (const OutputSizeType &size) |
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virtual OutputSizeType | GetOutputSize () const |
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virtual void | SetOutputRegion (OutputRegionType _arg) |
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virtual const OutputRegionType & | GetOutputRegion () const |
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virtual void | SetOutputSpacing (OutputSpacingType _arg) |
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virtual const OutputSpacingType & | GetOutputSpacing () const |
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virtual void | SetOutputDirection (OutputDirectionType _arg) |
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virtual const OutputDirectionType & | GetOutputDirection () const |
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virtual void | SetOutputOrigin (OutputPointType _arg) |
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virtual const OutputPointType & | GetOutputOrigin () const |
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virtual void | SetOverrideOutputInformation (bool _arg) |
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virtual const bool & | GetOverrideOutputInformation () const |
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virtual void | OverrideOutputInformationOn () |
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virtual void | OverrideOutputInformationOff () |
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const InputImageType * | GetInput (void) const |
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const InputImageType * | GetInput (unsigned int idx) const |
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virtual void | PopBackInput () |
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virtual void | PopFrontInput () |
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virtual void | PushBackInput (const InputImageType *image) |
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virtual void | PushFrontInput (const InputImageType *image) |
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virtual void | SetInput (const InputImageType *image) |
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virtual void | SetInput (unsigned int, const TSpeedImage *image) |
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virtual void | SetCoordinateTolerance (double _arg) |
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virtual double | GetCoordinateTolerance () const |
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virtual void | SetDirectionTolerance (double _arg) |
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virtual double | GetDirectionTolerance () const |
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OutputImageType * | GetOutput (unsigned int idx) |
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virtual void | GraftNthOutput (unsigned int idx, DataObject *output) |
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virtual void | GraftOutput (DataObject *output) |
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virtual void | GraftOutput (const DataObjectIdentifierType &key, DataObject *output) |
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OutputImageType * | GetOutput (void) |
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const OutputImageType * | GetOutput (void) const |
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virtual
ProcessObject::DataObjectPointer | MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) ITK_OVERRIDE |
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virtual void | AbortGenerateDataOff () |
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virtual void | AbortGenerateDataOn () |
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virtual const bool & | GetAbortGenerateData () const |
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NameArray | GetInputNames () const |
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MultiThreader * | GetMultiThreader () const |
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DataObjectPointerArraySizeType | GetNumberOfIndexedInputs () const |
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DataObjectPointerArraySizeType | GetNumberOfInputs () const |
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DataObjectPointerArraySizeType | GetNumberOfOutputs () const |
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virtual
DataObjectPointerArraySizeType | GetNumberOfValidRequiredInputs () const |
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NameArray | GetOutputNames () const |
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virtual const float & | GetProgress () const |
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NameArray | GetRequiredInputNames () const |
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bool | HasInput (const DataObjectIdentifierType &key) const |
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bool | HasOutput (const DataObjectIdentifierType &key) const |
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virtual DataObjectPointer | MakeOutput (const DataObjectIdentifierType &) |
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virtual void | PrepareOutputs () |
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virtual void | PropagateRequestedRegion (DataObject *output) |
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virtual void | ResetPipeline () |
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virtual void | SetAbortGenerateData (bool _arg) |
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virtual void | Update () |
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virtual void | UpdateLargestPossibleRegion () |
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virtual void | UpdateOutputData (DataObject *output) |
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virtual void | UpdateOutputInformation () |
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void | UpdateProgress (float progress) |
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DataObjectPointerArray | GetInputs () |
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DataObjectPointerArray | GetOutputs () |
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DataObjectPointerArray | GetIndexedInputs () |
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DataObjectPointerArray | GetIndexedOutputs () |
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DataObjectPointerArraySizeType | GetNumberOfIndexedOutputs () const |
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void | SetProgress (float progress) |
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virtual void | SetReleaseDataFlag (bool flag) |
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virtual bool | GetReleaseDataFlag () const |
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void | ReleaseDataFlagOn () |
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void | ReleaseDataFlagOff () |
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virtual void | SetReleaseDataBeforeUpdateFlag (bool _arg) |
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virtual const bool & | GetReleaseDataBeforeUpdateFlag () const |
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virtual void | ReleaseDataBeforeUpdateFlagOn () |
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virtual void | ReleaseDataBeforeUpdateFlagOff () |
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virtual void | SetNumberOfThreads (ThreadIdType _arg) |
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virtual const ThreadIdType & | GetNumberOfThreads () const |
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unsigned long | AddObserver (const EventObject &event, Command *) |
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unsigned long | AddObserver (const EventObject &event, Command *) const |
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virtual void | DebugOff () const |
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virtual void | DebugOn () const |
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Command * | GetCommand (unsigned long tag) |
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bool | GetDebug () const |
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MetaDataDictionary & | GetMetaDataDictionary (void) |
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const MetaDataDictionary & | GetMetaDataDictionary (void) const |
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virtual ModifiedTimeType | GetMTime () const |
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virtual const TimeStamp & | GetTimeStamp () const |
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bool | HasObserver (const EventObject &event) const |
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void | InvokeEvent (const EventObject &) |
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void | InvokeEvent (const EventObject &) const |
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virtual void | Modified () const |
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virtual void | Register () const ITK_OVERRIDE |
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void | RemoveAllObservers () |
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void | RemoveObserver (unsigned long tag) |
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void | SetDebug (bool debugFlag) const |
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void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
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virtual void | SetReferenceCount (int) ITK_OVERRIDE |
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virtual void | UnRegister () const ITK_OVERRIDE |
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virtual void | SetObjectName (std::string _arg) |
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virtual const std::string & | GetObjectName () const |
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virtual void | Delete () |
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virtual int | GetReferenceCount () const |
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| itkCloneMacro (Self) |
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void | Print (std::ostream &os, Indent indent=0) const |
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virtual void | ComputeGradient (const IndexType &index, const LevelSetImageType *output, const LabelImageType *labelImage, GradientImageType *gradientImage) |
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| FastMarchingUpwindGradientImageFilter () |
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void | GenerateData () |
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virtual void | Initialize (LevelSetImageType *) |
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void | PrintSelf (std::ostream &os, Indent indent) const |
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virtual void | UpdateNeighbors (const IndexType &index, const SpeedImageType *, LevelSetImageType *) |
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| ~FastMarchingUpwindGradientImageFilter () |
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virtual void | EnlargeOutputRequestedRegion (DataObject *output) |
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| FastMarchingImageFilter () |
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virtual void | GenerateOutputInformation () |
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virtual const PixelType & | GetLargeValue () const |
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virtual const LevelSetIndexType & | GetLastIndex () const |
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const AxisNodeType & | GetNodeUsedInCalculation (unsigned int idx) const |
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virtual const LevelSetIndexType & | GetStartIndex () const |
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virtual double | UpdateValue (const IndexType &index, const SpeedImageType *, LevelSetImageType *) |
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| ~FastMarchingImageFilter () |
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virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
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virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
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virtual void | GenerateInputRequestedRegion () |
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| ImageToImageFilter () |
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virtual void | VerifyInputInformation () |
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| ~ImageToImageFilter () |
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void | PushBackInput (const DataObject *input) |
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void | PushFrontInput (const DataObject *input) |
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virtual void | AfterThreadedGenerateData () |
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virtual void | AllocateOutputs () |
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virtual void | BeforeThreadedGenerateData () |
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virtual const
ImageRegionSplitterBase * | GetImageRegionSplitter (void) const |
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| ImageSource () |
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virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion) |
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virtual void | ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId) |
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virtual | ~ImageSource () |
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virtual void | AddInput (DataObject *input) |
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virtual void | AddOutput (DataObject *output) |
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virtual void | CacheInputReleaseDataFlags () |
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virtual void | GenerateOutputRequestedRegion (DataObject *output) |
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virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () const |
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bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
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bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
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| itkLegacyMacro (virtual void RemoveOutput(DataObject *output)) |
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| itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num)) |
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| itkLegacyMacro (virtual void RemoveInput(DataObject *input)) |
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| itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num)) |
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DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
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DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
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DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
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DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
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| ProcessObject () |
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virtual void | PropagateResetPipeline () |
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virtual void | ReleaseInputs () |
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virtual void | RemoveInput (const DataObjectIdentifierType &key) |
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virtual void | RemoveInput (DataObjectPointerArraySizeType) |
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virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
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virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
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virtual void | RestoreInputReleaseDataFlags () |
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virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
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virtual void | SetNthInput (DataObjectPointerArraySizeType num, DataObject *input) |
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virtual void | SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output) |
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void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
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void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
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virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
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virtual void | SetOutput (const DataObjectIdentifierType &key, DataObject *output) |
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virtual void | SetPrimaryInput (DataObject *input) |
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virtual void | SetPrimaryOutput (DataObject *output) |
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virtual void | VerifyPreconditions () |
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| ~ProcessObject () |
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DataObject * | GetInput (const DataObjectIdentifierType &key) |
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const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
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DataObject * | GetInput (DataObjectPointerArraySizeType idx) |
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const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
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DataObject * | GetPrimaryInput () |
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const DataObject * | GetPrimaryInput () const |
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virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
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virtual const char * | GetPrimaryInputName (void) const |
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virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
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virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () const |
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bool | AddRequiredInputName (const DataObjectIdentifierType &) |
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bool | AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
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bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
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void | SetRequiredInputNames (const NameArray &) |
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DataObject * | GetOutput (const DataObjectIdentifierType &key) |
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const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
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virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
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virtual const char * | GetPrimaryOutputName (void) const |
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DataObject * | GetOutput (DataObjectPointerArraySizeType idx) |
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const DataObject * | GetOutput (DataObjectPointerArraySizeType idx) const |
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DataObject * | GetPrimaryOutput () |
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const DataObject * | GetPrimaryOutput () const |
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| Object () |
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bool | PrintObservers (std::ostream &os, Indent indent) const |
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virtual void | SetTimeStamp (const TimeStamp &time) |
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virtual | ~Object () |
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virtual LightObject::Pointer | InternalClone () const |
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| LightObject () |
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virtual void | PrintHeader (std::ostream &os, Indent indent) const |
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virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
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virtual | ~LightObject () |
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