#include <itkTIFFImageIO.h>

Inheritance diagram for itk::TIFFImageIO:

Collaboration diagram for itk::TIFFImageIO:

Detailed Description

ImageIO object for reading and writing TIFF images.

Wiki Examples:

Definition at line 43 of file itkTIFFImageIO.h.

Public Types
enum	{ NOFORMAT, RGB_, GRAYSCALE, PALETTE_RGB, PALETTE_GRAYSCALE, OTHER }

enum	{ NoCompression, PackBits, JPEG, Deflate, LZW }

typedef SmartPointer< Self >	Pointer

typedef TIFFImageIO	Self

typedef ImageIOBase	Superclass

Public Types inherited from itk::ImageIOBase
typedef std::vector< std::string >	ArrayOfExtensionsType

typedef ::itk::OffsetValueType	BufferSizeType

enum	ByteOrder { BigEndian, LittleEndian, OrderNotApplicable }

enum	FileType { ASCII, Binary, TypeNotApplicable }

typedef ::itk::IndexValueType	IndexValueType

enum	IOComponentType { UNKNOWNCOMPONENTTYPE, UCHAR, CHAR, USHORT, SHORT, UINT, INT, ULONG, LONG, FLOAT, DOUBLE }

enum	IOPixelType { UNKNOWNPIXELTYPE, SCALAR, RGB, RGBA, OFFSET, VECTOR, POINT, COVARIANTVECTOR, SYMMETRICSECONDRANKTENSOR, DIFFUSIONTENSOR3D, COMPLEX, FIXEDARRAY, MATRIX }

typedef SmartPointer< Self >	Pointer

typedef ImageIOBase	Self

typedef ::itk::intmax_t	SizeType

typedef ::itk::SizeValueType	SizeValueType

typedef LightProcessObject	Superclass

Public Types inherited from itk::LightProcessObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightProcessObject	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual bool	CanReadFile (const char *) ITK_OVERRIDE

virtual bool	CanWriteFile (const char *) ITK_OVERRIDE

virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual const char *	GetNameOfClass () const

virtual void	Read (void *buffer) ITK_OVERRIDE

virtual void	ReadImageInformation () ITK_OVERRIDE

virtual void	ReadTiles (void *buffer)

virtual void	ReadVolume (void *buffer)

void	SetCompression (int compression)

void	SetCompressionToDeflate ()

void	SetCompressionToJPEG ()

void	SetCompressionToLZW ()

void	SetCompressionToNoCompression ()

void	SetCompressionToPackBits ()

virtual void	Write (const void *buffer) ITK_OVERRIDE

virtual void	WriteImageInformation () ITK_OVERRIDE


virtual void	SetJPEGQuality (int _arg)

virtual int	GetJPEGQuality () const

Public Member Functions inherited from itk::ImageIOBase
virtual bool	CanStreamRead ()

virtual bool	CanStreamWrite ()

virtual ImageIORegion	GenerateStreamableReadRegionFromRequestedRegion (const ImageIORegion &requested) const

virtual unsigned int	GetActualNumberOfSplitsForWriting (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion)

std::string	GetByteOrderAsString (ByteOrder) const

virtual unsigned int	GetComponentSize () const

virtual IOComponentType	GetComponentType () const

virtual const std::type_info &	GetComponentTypeInfo () const

virtual std::vector< double >	GetDefaultDirection (unsigned int i) const

virtual itk::SizeValueType	GetDimensions (unsigned int i) const

virtual std::vector< double >	GetDirection (unsigned int i) const

std::string	GetFileTypeAsString (FileType) const

SizeType	GetImageSizeInBytes () const

SizeType	GetImageSizeInComponents () const

SizeType	GetImageSizeInPixels () const

virtual unsigned int	GetNumberOfDimensions () const

virtual double	GetOrigin (unsigned int i) const

virtual SizeType	GetPixelStride () const

virtual double	GetSpacing (unsigned int i) const

virtual ImageIORegion	GetSplitRegionForWriting (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion)

const ArrayOfExtensionsType &	GetSupportedReadExtensions () const

const ArrayOfExtensionsType &	GetSupportedWriteExtensions () const

void	SetByteOrderToLittleEndian ()

virtual void	SetComponentType (const IOComponentType _arg)

virtual void	SetDirection (unsigned int i, const std::vector< double > &direction)

virtual void	SetDirection (unsigned int i, const vnl_vector< double > &direction)

void	SetFileTypeToBinary ()

void	SetNumberOfDimensions (unsigned int)

virtual void	SetOrigin (unsigned int i, double origin)

template<typename TPixel , unsigned VLength>
void	SetPixelTypeInfo (const SymmetricSecondRankTensor< TPixel, VLength > *)

template<typename TPixel >
void	SetPixelTypeInfo (const DiffusionTensor3D< TPixel > *)

template<typename TPixel , unsigned VLength>
void	SetPixelTypeInfo (const Matrix< TPixel, VLength, VLength > *)

template<typename TPixel >
void	SetPixelTypeInfo (const std::complex< TPixel > *)

template<unsigned VLength>
void	SetPixelTypeInfo (const Offset< VLength > *)

virtual void	SetSpacing (unsigned int i, double spacing)

template<typename TPixel >
void	SetTypeInfo (const TPixel *)

virtual bool	SupportsDimension (unsigned long dim)

virtual void	SetFileName (const char *_arg)

virtual const char *	GetFileName () const

virtual void	SetDimensions (unsigned int i, unsigned int dim)

virtual void	SetIORegion (ImageIORegion _arg)

virtual const ImageIORegion &	GetIORegion () const

virtual void	SetPixelType (const IOPixelType _arg)

virtual IOPixelType	GetPixelType () const

virtual void	SetNumberOfComponents (unsigned int _arg)

virtual const unsigned int &	GetNumberOfComponents () const

virtual void	SetUseCompression (bool _arg)

virtual bool	GetUseCompression () const

virtual void	UseCompressionOn ()

virtual void	UseCompressionOff ()

virtual void	SetUseStreamedReading (bool _arg)

virtual bool	GetUseStreamedReading () const

virtual void	UseStreamedReadingOn ()

virtual void	UseStreamedReadingOff ()

virtual void	SetUseStreamedWriting (bool _arg)

virtual bool	GetUseStreamedWriting () const

virtual void	UseStreamedWritingOn ()

virtual void	UseStreamedWritingOff ()

virtual void	SetFileType (const FileType _arg)

virtual FileType	GetFileType () const

void	SetFileTypeToASCII ()

virtual void	SetByteOrder (const ByteOrder _arg)

virtual ByteOrder	GetByteOrder () const

void	SetByteOrderToBigEndian ()

template<typename TPixel >
void	SetPixelTypeInfo (const TPixel *)

template<typename TPixel >
void	SetPixelTypeInfo (const RGBPixel< TPixel > *)

template<typename TPixel >
void	SetPixelTypeInfo (const RGBAPixel< TPixel > *)

template<typename TPixel , unsigned VLength>
void	SetPixelTypeInfo (const Vector< TPixel, VLength > *)

template<typename TPixel >
void	SetPixelTypeInfo (const VariableLengthVector< TPixel > *)

template<typename TPixel , unsigned VLength>
void	SetPixelTypeInfo (const CovariantVector< TPixel, VLength > *)

template<typename TPixel , unsigned VLength>
void	SetPixelTypeInfo (const FixedArray< TPixel, VLength > *)

Public Member Functions inherited from itk::LightProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual const bool &	GetAbortGenerateData () const

virtual void	SetAbortGenerateData (bool _arg)

virtual void	UpdateOutputData ()

void	UpdateProgress (float amount)

virtual void	SetProgress (float _arg)

virtual const float &	GetProgress () const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary (void)

const MetaDataDictionary &	GetMetaDataDictionary (void) const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const ITK_OVERRIDE

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int) ITK_OVERRIDE

virtual void	UnRegister () const ITK_OVERRIDE

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::ImageIOBase
static std::string	GetComponentTypeAsString (IOComponentType)

static IOComponentType	GetComponentTypeFromString (const std::string &typeString)

static std::string	GetPixelTypeAsString (IOPixelType)

static IOPixelType	GetPixelTypeFromString (const std::string &pixelString)

Static Public Member Functions inherited from itk::LightProcessObject
static Pointer	New ()

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Protected Member Functions
bool	CanFindTIFFTag (unsigned int t)

int	EvaluateImageAt (void out, void in)

void	GetColor (int index, unsigned short red, unsigned short green, unsigned short *blue)

unsigned int	GetFormat ()

void	InitializeColors ()

void	InternalWrite (const void *buffer)

virtual void	PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE

void	ReadGenericImage (void *out, unsigned int, unsigned int height)

void *	ReadRawByteFromTag (unsigned int t, unsigned int &value_count)

void	ReadTwoSamplesPerPixelImage (void *out, unsigned int, unsigned int height)

	TIFFImageIO ()

	~TIFFImageIO ()

Protected Member Functions inherited from itk::ImageIOBase
void	AddSupportedReadExtension (const char *extension)

void	AddSupportedWriteExtension (const char *extension)

void	ComputeStrides ()

virtual unsigned int	GetActualNumberOfSplitsForWritingCanStreamWrite (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion) const

SizeType	GetComponentStride () const

virtual const ImageRegionSplitterBase *	GetImageRegionSplitter (void) const

virtual unsigned int	GetPixelSize () const

SizeType	GetRowStride () const

SizeType	GetSliceStride () const

virtual ImageIORegion	GetSplitRegionForWritingCanStreamWrite (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion) const

	ImageIOBase ()

virtual void	OpenFileForReading (std::ifstream &inputStream, const std::string &filename, bool ascii=false)

virtual void	OpenFileForWriting (std::ofstream &outputStream, const std::string &filename, bool truncate=true, bool ascii=false)

virtual void	ReadBufferAsASCII (std::istream &os, void *buffer, IOComponentType ctype, SizeType numberOfBytesToBeRead)

bool	ReadBufferAsBinary (std::istream &os, void *buffer, SizeType numberOfBytesToBeRead)

virtual void	Reset (const bool freeDynamic=true)

void	Resize (const unsigned int numDimensions, const unsigned int *dimensions)

virtual void	WriteBufferAsASCII (std::ostream &os, const void *buffer, IOComponentType ctype, SizeType numberOfBytesToWrite)

	~ImageIOBase ()

Protected Member Functions inherited from itk::LightProcessObject
virtual void	GenerateData ()

	LightProcessObject ()

	~LightProcessObject ()

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
int	m_Compression

TIFFReaderInternal *	m_InternalImage

int	m_JPEGQuality

Protected Attributes inherited from itk::ImageIOBase
ByteOrder	m_ByteOrder

IOComponentType	m_ComponentType

std::vector< SizeValueType >	m_Dimensions

std::vector< std::vector < double > >	m_Direction

std::string	m_FileName

FileType	m_FileType

bool	m_Initialized

ImageIORegion	m_IORegion

unsigned int	m_NumberOfComponents

unsigned int	m_NumberOfDimensions

std::vector< double >	m_Origin

IOPixelType	m_PixelType

std::vector< double >	m_Spacing

std::vector< SizeType >	m_Strides

bool	m_UseCompression

bool	m_UseStreamedReading

bool	m_UseStreamedWriting

Protected Attributes inherited from itk::LightObject
InternalReferenceCountType	m_ReferenceCount

SimpleFastMutexLock	m_ReferenceCountLock

Private Member Functions
void	operator= (const Self &)

	TIFFImageIO (const Self &)

Private Attributes
unsigned short *	m_ColorBlue

unsigned short *	m_ColorGreen

unsigned short *	m_ColorRed

unsigned int	m_ImageFormat

int	m_TotalColors

Additional Inherited Members
Protected Types inherited from itk::LightObject
typedef int	InternalReferenceCountType

Member Typedef Documentation

typedef SmartPointer< Self > itk::TIFFImageIO::Pointer

Definition at line 49 of file itkTIFFImageIO.h.

typedef TIFFImageIO itk::TIFFImageIO::Self

Standard class typedefs.

Definition at line 47 of file itkTIFFImageIO.h.

typedef ImageIOBase itk::TIFFImageIO::Superclass

Definition at line 48 of file itkTIFFImageIO.h.

Member Enumeration Documentation

anonymous enum

Enumerator
NOFORMAT
RGB_
GRAYSCALE
PALETTE_RGB
PALETTE_GRAYSCALE
OTHER

Definition at line 89 of file itkTIFFImageIO.h.

anonymous enum

Enumerator
NoCompression
PackBits
JPEG
Deflate
LZW

Definition at line 92 of file itkTIFFImageIO.h.

Constructor & Destructor Documentation

itk::TIFFImageIO::TIFFImageIO ( )

protected

itk::TIFFImageIO::~TIFFImageIO ( )

protected

itk::TIFFImageIO::TIFFImageIO ( const Self & )

private

Member Function Documentation

bool itk::TIFFImageIO::CanFindTIFFTag ( unsigned int t )

protected

virtual bool itk::TIFFImageIO::CanReadFile ( const char * )

virtual

Determine the file type. Returns true if this ImageIO can read the file specified.

Implements itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

virtual bool itk::TIFFImageIO::CanWriteFile ( const char * )

virtual

Determine the file type. Returns true if this ImageIO can read the file specified.

Implements itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

virtual::itk::LightObject::Pointer itk::TIFFImageIO::CreateAnother ( void ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightProcessObject.

Reimplemented in itk::LSMImageIO.

int itk::TIFFImageIO::EvaluateImageAt	(	void *	out,
		void *	in
	)

protected

void itk::TIFFImageIO::GetColor	(	int	index,
		unsigned short *	red,
		unsigned short *	green,
		unsigned short *	blue
	)

protected

unsigned int itk::TIFFImageIO::GetFormat ( )

protected

virtual int itk::TIFFImageIO::GetJPEGQuality ( ) const

virtual

Set/Get the level of quality for the output images if Compression is JPEG. Settings vary from 1 to 100. 100 is the highest quality. Default is 75

virtual const char* itk::TIFFImageIO::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

void itk::TIFFImageIO::InitializeColors ( )

protected

void itk::TIFFImageIO::InternalWrite ( const void * buffer )

protected

static Pointer itk::TIFFImageIO::New ( )

static

Method for creation through the object factory.

void itk::TIFFImageIO::operator= ( const Self & )

private

virtual void itk::TIFFImageIO::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

virtual void itk::TIFFImageIO::Read ( void * buffer )

virtual

Reads the data from disk into the memory buffer provided.

Implements itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

void itk::TIFFImageIO::ReadGenericImage	(	void *	out,
		unsigned	int,
		unsigned int	height
	)

protected

virtual void itk::TIFFImageIO::ReadImageInformation ( )

virtual

Set the spacing and dimension information for the set filename.

Implements itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

void* itk::TIFFImageIO::ReadRawByteFromTag	(	unsigned int	t,
		unsigned int &	value_count
	)

protected

virtual void itk::TIFFImageIO::ReadTiles ( void * buffer )

virtual

Reads 3D data from tiled tiff.

void itk::TIFFImageIO::ReadTwoSamplesPerPixelImage	(	void *	out,
		unsigned	int,
		unsigned int	height
	)

protected

virtual void itk::TIFFImageIO::ReadVolume ( void * buffer )

virtual

Reads 3D data from multi-pages tiff.

void itk::TIFFImageIO::SetCompression ( int compression )

inline

Definition at line 110 of file itkTIFFImageIO.h.

void itk::TIFFImageIO::SetCompressionToDeflate ( )

inline

Definition at line 107 of file itkTIFFImageIO.h.

void itk::TIFFImageIO::SetCompressionToJPEG ( )

inline

Definition at line 106 of file itkTIFFImageIO.h.

void itk::TIFFImageIO::SetCompressionToLZW ( )

inline

Definition at line 108 of file itkTIFFImageIO.h.

void itk::TIFFImageIO::SetCompressionToNoCompression ( )

inline

Definition at line 104 of file itkTIFFImageIO.h.

void itk::TIFFImageIO::SetCompressionToPackBits ( )

inline

Definition at line 105 of file itkTIFFImageIO.h.

virtual void itk::TIFFImageIO::SetJPEGQuality ( int _arg )

virtual

Set/Get the level of quality for the output images if Compression is JPEG. Settings vary from 1 to 100. 100 is the highest quality. Default is 75

virtual void itk::TIFFImageIO::Write ( const void * buffer )

virtual

Writes the data to disk from the memory buffer provided. Make sure that the IORegion has been set properly.

Implements itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

virtual void itk::TIFFImageIO::WriteImageInformation ( )

virtual

Writes the spacing and dimensions of the image. Assumes SetFileName has been called with a valid file name.

Implements itk::ImageIOBase.

Reimplemented in itk::LSMImageIO.

Member Data Documentation

unsigned short* itk::TIFFImageIO::m_ColorBlue

private

Definition at line 177 of file itkTIFFImageIO.h.

unsigned short* itk::TIFFImageIO::m_ColorGreen

private

Definition at line 176 of file itkTIFFImageIO.h.

unsigned short* itk::TIFFImageIO::m_ColorRed

private

Definition at line 175 of file itkTIFFImageIO.h.

int itk::TIFFImageIO::m_Compression

protected

Definition at line 168 of file itkTIFFImageIO.h.

unsigned int itk::TIFFImageIO::m_ImageFormat

private

Definition at line 179 of file itkTIFFImageIO.h.

TIFFReaderInternal* itk::TIFFImageIO::m_InternalImage

protected

Definition at line 166 of file itkTIFFImageIO.h.

int itk::TIFFImageIO::m_JPEGQuality

protected

Definition at line 169 of file itkTIFFImageIO.h.

int itk::TIFFImageIO::m_TotalColors

private

Definition at line 178 of file itkTIFFImageIO.h.

The documentation for this class was generated from the following file:

itkTIFFImageIO.h

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation