template<typename TInputImage, typename TOutputImage>
class itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >
Decrease the image size by cropping the image to the selected region bounds.
ExtractSliceImageFilter changes the image boundary of an image by removing pixels outside the target region. The target region must be specified.
ExtractSliceImageFilter also collapses dimensions so that the input image may have more dimensions than the output image (i.e. 4-D input image to a 3-D output image). To specify what dimensions to collapse, the ExtractionRegion must be specified. For any dimension dim where ExtractionRegion.Size[dim] = 0, that dimension is collapsed. The index to collapse on is specified by ExtractionRegion.Index[dim]. For example, we have a image 4D = a 4x4x4x4 image, and we want to get a 3D image, 3D = a 4x4x4 image, specified as [x,y,z,2] from 4D (i.e. the 3rd "time" slice from 4D). The ExtractionRegion.Size = [4,4,4,0] and ExtractionRegion.Index = [0,0,0,2].
The number of dimension in ExtractionRegion.Size and Index must = InputImageDimension. The number of non-zero dimensions in ExtractionRegion.Size must = OutputImageDimension.
The output image produced by this filter will have the same origin as the input image, while the ImageRegion of the output image will start at the starting index value provided in the ExtractRegion parameter. If you are looking for a filter that will re-compute the origin of the output image, and provide an output image region whose index is set to zeros, then you may want to use the RegionOfInterestImageFilter. The output spacing is is simply the collapsed version of the input spacing.
Determining the direction of the collapsed output image from an larger dimensional input space is an ill defined problem in general. It is required that the application developer select the desired transformation strategy for collapsing direction cosigns. It is REQUIRED that a strategy be explicitly requested (i.e. there is no working default). Direction Collapsing Strategies: 1) DirectionCollapseToUnknown(); This is the default and the filter can not run when this is set. The reason is to explicitly force the application developer to define their desired behavior. 1) DirectionCollapseToIdentity(); Output has identity direction no matter what 2) DirectionCollaspeToSubmatrix(); Output direction is the sub-matrix if it is positive definite, else throw an exception.
This filter is implemented as a multithreaded filter. It provides a ThreadedGenerateData() method for its implementation.
- See Also
- CropImageFilter
Definition at line 83 of file itkTestingExtractSliceImageFilter.h.
|
| virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
| |
| | ExtractSliceImageFilter () |
| |
| virtual void | GenerateOutputInformation () |
| |
| void | PrintSelf (std::ostream &os, Indent indent) const |
| |
| void | ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId) |
| |
| | ~ExtractSliceImageFilter () |
| |
| virtual void | AfterThreadedGenerateData () |
| |
| virtual void | AllocateOutputs () |
| |
| virtual void | BeforeThreadedGenerateData () |
| |
| virtual void | GenerateData () ITK_OVERRIDE |
| |
virtual const
ImageRegionSplitterBase * | GetImageRegionSplitter (void) const |
| |
| | ImageSource () |
| |
| virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion) |
| |
| virtual | ~ImageSource () |
| |
| virtual void | AddInput (DataObject *input) |
| |
| virtual void | AddOutput (DataObject *output) |
| |
| virtual void | CacheInputReleaseDataFlags () |
| |
| virtual void | GenerateInputRequestedRegion () |
| |
| virtual void | GenerateOutputRequestedRegion (DataObject *output) |
| |
virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () const |
| |
| bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
| |
| bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
| |
| | itkLegacyMacro (virtual void RemoveOutput(DataObject *output)) |
| |
| | itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num)) |
| |
| | itkLegacyMacro (virtual void RemoveInput(DataObject *input)) |
| |
| | itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num)) |
| |
| DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
| |
| DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
| |
| DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
| |
| DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
| |
| | ProcessObject () |
| |
| virtual void | PropagateResetPipeline () |
| |
| virtual void | ReleaseInputs () |
| |
| virtual void | RemoveInput (const DataObjectIdentifierType &key) |
| |
| virtual void | RemoveInput (DataObjectPointerArraySizeType) |
| |
| virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
| |
| virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
| |
| virtual void | RestoreInputReleaseDataFlags () |
| |
| virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
| |
| virtual void | SetNthInput (DataObjectPointerArraySizeType num, DataObject *input) |
| |
| virtual void | SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output) |
| |
| void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
| |
| void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
| |
| virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
| |
| virtual void | SetOutput (const DataObjectIdentifierType &key, DataObject *output) |
| |
| virtual void | SetPrimaryInput (DataObject *input) |
| |
| virtual void | SetPrimaryOutput (DataObject *output) |
| |
| virtual void | VerifyInputInformation () |
| |
| virtual void | VerifyPreconditions () |
| |
| | ~ProcessObject () |
| |
| DataObject * | GetInput (const DataObjectIdentifierType &key) |
| |
| const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
| |
| DataObject * | GetInput (DataObjectPointerArraySizeType idx) |
| |
| const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
| |
| virtual void | PushBackInput (const DataObject *input) |
| |
| virtual void | PopBackInput () |
| |
| virtual void | PushFrontInput (const DataObject *input) |
| |
| virtual void | PopFrontInput () |
| |
| DataObject * | GetPrimaryInput () |
| |
| const DataObject * | GetPrimaryInput () const |
| |
| virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
| |
| virtual const char * | GetPrimaryInputName (void) const |
| |
| virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
| |
virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () const |
| |
| bool | AddRequiredInputName (const DataObjectIdentifierType &) |
| |
| bool | AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
| |
| bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
| |
| bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
| |
| void | SetRequiredInputNames (const NameArray &) |
| |
| DataObject * | GetOutput (const DataObjectIdentifierType &key) |
| |
| const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
| |
| virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
| |
| virtual const char * | GetPrimaryOutputName (void) const |
| |
| DataObject * | GetOutput (DataObjectPointerArraySizeType idx) |
| |
| const DataObject * | GetOutput (DataObjectPointerArraySizeType idx) const |
| |
| DataObject * | GetPrimaryOutput () |
| |
| const DataObject * | GetPrimaryOutput () const |
| |
| | Object () |
| |
| bool | PrintObservers (std::ostream &os, Indent indent) const |
| |
| virtual void | SetTimeStamp (const TimeStamp &time) |
| |
| virtual | ~Object () |
| |
| virtual LightObject::Pointer | InternalClone () const |
| |
| | LightObject () |
| |
| virtual void | PrintHeader (std::ostream &os, Indent indent) const |
| |
| virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
| |
| virtual | ~LightObject () |
| |
template<typename TInputImage , typename TOutputImage >
Set the strategy to be used to collapse pysical space dimensions.
itk::itkExtractSliceImageFilter::DIRECTIONCOLLAPSETOIDENTITY Set the strategy so that all collapsed images have an identity direction. Use this strategy when you know that retention of the physical space orientation of the collapsed image is not important.
itk::itkExtractSliceImageFilter::DIRECTIONCOLLAPSETOGUESS Set the strategy so that all collapsed images where output direction is the sub-matrix it it is positive definite, else return identity. This is backwards compatible with ITKv3, but is highly discouraged because the results are difficult to anticipate under differing data scenerios.
itk::itkExtractSliceImageFilter::DIRECTIONCOLLAPSETOSUBMATRIX Set the strategy so that all collapsed images where output direction is the sub-matrix it it is positive definite, else throw an exception. Use this strategy when it is known that properly identified physical space sub-volumes can be reliably extracted from a higher dimensional space. For example when the application programmer knows that a 4D image is 3D+time, and that the 3D sub-space is properly defined.
Definition at line 149 of file itkTestingExtractSliceImageFilter.h.
References itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::DIRECTIONCOLLAPSETOGUESS, itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::DIRECTIONCOLLAPSETOIDENTITY, itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::DIRECTIONCOLLAPSETOSUBMATRIX, itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::DIRECTIONCOLLAPSETOUNKOWN, itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::m_DirectionCollaspeStrategy, and itk::Object::Modified().
Referenced by itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::SetDirectionCollapseToGuess(), itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::SetDirectionCollapseToIdentity(), and itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >::SetDirectionCollapseToSubmatrix().
Inheritance diagram for itk::Testing::ExtractSliceImageFilter< TInputImage, TOutputImage >:
1.8.5
