Detailed Description

template<unsigned int NSpaceDimension = 3>
class itk::bio::CellularAggregate< NSpaceDimension >

Base class for different types of cellular groups, including bacterial colonies and pluricellular organisms.

This class represents an aggregation of bio::Cell objects.

Examples:: Segmentation/CellularSegmentation1.cxx, and Segmentation/CellularSegmentation2.cxx.

Definition at line 43 of file itkBioCellularAggregate.h.

Public Types
typedef Cell< NSpaceDimension >	BioCellType

typedef MeshType::CellAutoPointer	CellAutoPointer

typedef CellInterface < typename MeshType::CellPixelType, typename MeshType::CellTraits >	CellInterfaceType

typedef double	CellPixelType

typedef PointDataContainer::ConstIterator	CellsConstIterator

typedef PointDataContainer::Iterator	CellsIterator

typedef SmartPointer< const Self >	ConstPointer

typedef float	ImagePixelType

typedef MeshType::ConstPointer	MeshConstPointer

typedef MeshType::Pointer	MeshPointer

typedef DefaultDynamicMeshTraits < PointPixelType, NSpaceDimension, NSpaceDimension, double, double, CellPixelType >	MeshTraits

typedef Mesh< PointPixelType, NSpaceDimension, MeshTraits >	MeshType

typedef MeshType::PointDataContainer	PointDataContainer

typedef SmartPointer< Self >	Pointer

typedef BioCellType *	PointPixelType

typedef PointsContainer::ConstIterator	PointsConstIterator

typedef MeshType::PointsContainer	PointsContainer

typedef PointsContainer::Iterator	PointsIterator

typedef MeshType::PointType	PointType

typedef CellularAggregate	Self

typedef SubstrateType::Pointer	SubstratePointer

typedef std::vector < SubstratePointer >	SubstratesVector

typedef Image< ImagePixelType, NSpaceDimension >	SubstrateType

typedef ImagePixelType	SubstrateValueType

typedef CellularAggregateBase	Superclass

typedef BioCellType::VectorType	VectorType

typedef VoronoiRegionsContainer::ConstIterator	VoronoiConstIterator

typedef VoronoiRegionsContainer::Iterator	VoronoiIterator

typedef VoronoiRegionType::SelfAutoPointer	VoronoiRegionAutoPointer

typedef MeshType::CellsContainer	VoronoiRegionsContainer

typedef PolygonCell < CellInterfaceType >	VoronoiRegionType

Public Types inherited from itk::bio::CellularAggregateBase
typedef SmartPointer< const Self >	ConstPointer

typedef float	ImagePixelType

typedef SmartPointer< Self >	Pointer

typedef CellularAggregateBase	Self

typedef ImagePixelType	SubstrateValueType

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual void	Add (CellBase *cell)

virtual void	Add (CellBase *cell, const VectorType &perturbation)

virtual void	Add (CellBase cellA, CellBase cellB, double perturbationLength) ITK_OVERRIDE

virtual void	AddSubstrate (SubstrateType *substrate)

virtual void	AdvanceTimeStep (void)

virtual ::itk::LightObject::Pointer	CreateAnother (void) const

void	DumpContent (std::ostream &os) const

virtual const MeshType *	GetMesh () const

virtual MeshType *	GetModifiableMesh ()

virtual const char *	GetNameOfClass () const

unsigned int	GetNumberOfCells (void) const

virtual SubstratesVector &	GetSubstrates (void)

virtual SubstrateValueType	GetSubstrateValue (IdentifierType cellId, unsigned int substrateId) const ITK_OVERRIDE

virtual void	GetVoronoi (IdentifierType cellId, VoronoiRegionAutoPointer &) const

virtual void	KillAll (void)

virtual void	Remove (CellBase *cell) ITK_OVERRIDE

virtual void	SetEgg (BioCellType *cell, const PointType &position)

void	SetGrowthRadiusIncrement (double value)

void	SetGrowthRadiusLimit (double value)

Public Member Functions inherited from itk::bio::CellularAggregateBase
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary (void)

const MetaDataDictionary &	GetMetaDataDictionary (void) const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const ITK_OVERRIDE

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int) ITK_OVERRIDE

virtual void	UnRegister () const ITK_OVERRIDE

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static unsigned int	GetDimension ()

static Pointer	New ()

Static Public Member Functions inherited from itk::bio::CellularAggregateBase
static Pointer	New ()

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Public Attributes
static const unsigned int	SpaceDimension = NSpaceDimension

Protected Member Functions
	CellularAggregate ()

	CellularAggregate (const Self &)

virtual void	ClearForces (void)

virtual void	ComputeClosestPoints (void)

virtual void	ComputeForces (void)

void	operator= (const Self &)

virtual void	PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE

virtual void	UpdatePositions (void)

virtual	~CellularAggregate ()

Protected Member Functions inherited from itk::bio::CellularAggregateBase
	CellularAggregateBase ()

	CellularAggregateBase (const Self &)

virtual	~CellularAggregateBase ()

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Attributes
SizeValueType	m_ClosestPointComputationInterval

double	m_FrictionForce

SizeValueType	m_Iteration

MeshPointer	m_Mesh

SubstratesVector	m_Substrates

Additional Inherited Members
Protected Types inherited from itk::LightObject
typedef int	InternalReferenceCountType

Protected Attributes inherited from itk::LightObject
InternalReferenceCountType	m_ReferenceCount

SimpleFastMutexLock	m_ReferenceCountLock