ITK  4.6.0
Insight Segmentation and Registration Toolkit
itkBioGeneNetwork.h
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18 #ifndef __itkBioGeneNetwork_h
19 #define __itkBioGeneNetwork_h
20 
21 
22 #include "itkMacro.h"
23 
24 #include <vector>
25 
26 namespace itk
27 {
28 namespace bio
29 {
39 {
40 public:
41  typedef std::vector< float > ProteomeType;
42  typedef std::vector< float > DomainsType;
43 
44 public:
45  GeneNetwork();
46  virtual ~GeneNetwork();
47 
48  void Copy(const GeneNetwork & genome);
49 
50 private:
51 
52  // This array contains the concentrations of each protein
53  // in the cell at a certain time.
55 
56  // This array contains the concentrations of domain affinities
57  // in the cell at a certain time. Since each protein may
58  // have multiple domains and each domain has affinities
59  // for standard domains in the regulatory section of genes,
60  // this array is indexed by the domains in the regulatory
61  // section. The final value on each entry indicates the
62  // probability of a domain to be bound during a certain time
63  // interval.
65 };
66 } // end namespace bio
67 } // end namespace itk
68 
69 #endif
void Copy(const GeneNetwork &genome)
std::vector< float > DomainsType
ProteomeType m_ProteinConcentration
This class implements the abstraction of a biological gene network.
DomainsType m_DomainConcentration
std::vector< float > ProteomeType