itkDescoteauxSheetnessFeatureGenerator.h

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/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    itkDescoteauxSheetnessFeatureGenerator.h
  Language:  C++
  Date:      $Date$
  Version:   $Revision$

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#ifndef __itkDescoteauxSheetnessFeatureGenerator_h
#define __itkDescoteauxSheetnessFeatureGenerator_h

#include "itkFeatureGenerator.h"
#include "itkImage.h"
#include "itkImageSpatialObject.h"
#include "itkHessianRecursiveGaussianImageFilter.h"
#include "itkSymmetricSecondRankTensor.h"
#include "itkSymmetricEigenAnalysisImageFilter.h"
#include "itkDescoteauxSheetnessImageFilter.h"
#include "itkRescaleIntensityImageFilter.h"

namespace itk
{

template <unsigned int NDimension>
class ITK_EXPORT DescoteauxSheetnessFeatureGenerator : public FeatureGenerator<NDimension>
{
public:
  typedef DescoteauxSheetnessFeatureGenerator          Self;
  typedef FeatureGenerator<NDimension>                 Superclass;
  typedef SmartPointer<Self>                           Pointer;
  typedef SmartPointer<const Self>                     ConstPointer;

  itkNewMacro(Self);

  itkTypeMacro(DescoteauxSheetnessFeatureGenerator, FeatureGenerator);

  itkStaticConstMacro(Dimension, unsigned int, NDimension);

  typedef signed short                                      InputPixelType;
  typedef Image< InputPixelType, Dimension >                InputImageType;
  typedef ImageSpatialObject< NDimension, InputPixelType >  InputImageSpatialObjectType;
  typedef typename InputImageSpatialObjectType::Pointer     InputImageSpatialObjectPointer;
  typedef typename Superclass::SpatialObjectType            SpatialObjectType;

  using ProcessObject::SetInput;
  void SetInput( const SpatialObjectType * input );
  const SpatialObjectType * GetInput() const;

  const SpatialObjectType * GetFeature() const;

  itkSetMacro( Sigma, double );
  itkGetMacro( Sigma, double );

  itkSetMacro( SheetnessNormalization, double );
  itkGetMacro( SheetnessNormalization, double );

  itkSetMacro( BloobinessNormalization, double );
  itkGetMacro( BloobinessNormalization, double );

  itkSetMacro( NoiseNormalization, double );
  itkGetMacro( NoiseNormalization, double );

  itkSetMacro( DetectBrightSheets, bool );
  itkGetMacro( DetectBrightSheets, bool );
  itkBooleanMacro( DetectBrightSheets );

protected:
  DescoteauxSheetnessFeatureGenerator();
  virtual ~DescoteauxSheetnessFeatureGenerator();
  void PrintSelf(std::ostream& os, Indent indent) const;

  void  GenerateData ();

private:
  DescoteauxSheetnessFeatureGenerator(const Self&); //purposely not implemented
  void operator=(const Self&); //purposely not implemented

  typedef float                                       InternalPixelType;
  typedef Image< InternalPixelType, Dimension >       InternalImageType;

  typedef InternalPixelType                           OutputPixelType;
  typedef InternalImageType                           OutputImageType;

  typedef ImageSpatialObject< NDimension, OutputPixelType >  OutputImageSpatialObjectType;

  typedef HessianRecursiveGaussianImageFilter< InputImageType >     HessianFilterType;
  typedef typename HessianFilterType::OutputImageType               HessianImageType;
  typedef typename HessianImageType::PixelType                      HessianPixelType;

  typedef  FixedArray< double, HessianPixelType::Dimension >   EigenValueArrayType;
  typedef  Image< EigenValueArrayType, Dimension >             EigenValueImageType;

  typedef  SymmetricEigenAnalysisImageFilter< HessianImageType, EigenValueImageType >     EigenAnalysisFilterType;
 
  typedef  DescoteauxSheetnessImageFilter< EigenValueImageType, OutputImageType >         SheetnessFilterType;

  typedef  RescaleIntensityImageFilter< OutputImageType, OutputImageType >                RescaleFilterType;

  typename HessianFilterType::Pointer             m_HessianFilter;
  typename EigenAnalysisFilterType::Pointer       m_EigenAnalysisFilter;
  typename SheetnessFilterType::Pointer           m_SheetnessFilter;
  typename RescaleFilterType::Pointer             m_RescaleFilter;

  double      m_Sigma;
  double      m_SheetnessNormalization;
  double      m_BloobinessNormalization;
  double      m_NoiseNormalization;
  bool        m_DetectBrightSheets;
};

} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
# include "itkDescoteauxSheetnessFeatureGenerator.hxx"
#endif

#endif