itkMultiResolutionImageRegistrationMethod.h

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 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkMultiResolutionImageRegistrationMethod_h
#define __itkMultiResolutionImageRegistrationMethod_h

#include "itkProcessObject.h"
#include "itkImageToImageMetric.h"
#include "itkSingleValuedNonLinearOptimizer.h"
#include "itkMultiResolutionPyramidImageFilter.h"
#include "itkNumericTraits.h"
#include "itkDataObjectDecorator.h"

namespace itk
{
template< typename TFixedImage, typename TMovingImage >
class MultiResolutionImageRegistrationMethod:public ProcessObject
{
public:
  typedef MultiResolutionImageRegistrationMethod Self;
  typedef ProcessObject                          Superclass;
  typedef SmartPointer< Self >                   Pointer;
  typedef SmartPointer< const Self >             ConstPointer;

  itkNewMacro(Self);

  itkTypeMacro(MultiResolutionImageRegistrationMethod, ProcessObject);

  typedef          TFixedImage                  FixedImageType;
  typedef typename FixedImageType::ConstPointer FixedImageConstPointer;
  typedef typename FixedImageType::RegionType   FixedImageRegionType;

  typedef          TMovingImage                  MovingImageType;
  typedef typename MovingImageType::ConstPointer MovingImageConstPointer;

  typedef ImageToImageMetric< FixedImageType, MovingImageType > MetricType;
  typedef typename MetricType::Pointer                          MetricPointer;

  typedef typename MetricType::TransformType TransformType;
  typedef typename TransformType::Pointer    TransformPointer;

  typedef  DataObjectDecorator< TransformType >      TransformOutputType;
  typedef typename TransformOutputType::Pointer      TransformOutputPointer;
  typedef typename TransformOutputType::ConstPointer TransformOutputConstPointer;

  typedef typename MetricType::InterpolatorType InterpolatorType;
  typedef typename InterpolatorType::Pointer    InterpolatorPointer;

  typedef SingleValuedNonLinearOptimizer OptimizerType;

  typedef MultiResolutionPyramidImageFilter< FixedImageType, FixedImageType > FixedImagePyramidType;
  typedef typename FixedImagePyramidType::Pointer                             FixedImagePyramidPointer;

  typedef typename FixedImagePyramidType::ScheduleType ScheduleType;

  typedef MultiResolutionPyramidImageFilter< MovingImageType, MovingImageType > MovingImagePyramidType;
  typedef typename MovingImagePyramidType::Pointer                              MovingImagePyramidPointer;

  typedef  typename MetricType::TransformParametersType ParametersType;

  typedef typename DataObject::Pointer DataObjectPointer;

  void StopRegistration();

  itkSetConstObjectMacro(FixedImage, FixedImageType);
  itkGetConstObjectMacro(FixedImage, FixedImageType);

  itkSetConstObjectMacro(MovingImage, MovingImageType);
  itkGetConstObjectMacro(MovingImage, MovingImageType);

  itkSetObjectMacro(Optimizer,  OptimizerType);
  itkGetModifiableObjectMacro(Optimizer, OptimizerType);

  itkSetObjectMacro(Metric, MetricType);
  itkGetModifiableObjectMacro(Metric, MetricType);

  itkSetMacro(FixedImageRegion, FixedImageRegionType);
  itkGetConstReferenceMacro(FixedImageRegion, FixedImageRegionType);

  itkSetObjectMacro(Transform, TransformType);
  itkGetModifiableObjectMacro(Transform, TransformType);

  itkSetObjectMacro(Interpolator, InterpolatorType);
  itkGetModifiableObjectMacro(Interpolator, InterpolatorType);

  itkSetObjectMacro(FixedImagePyramid, FixedImagePyramidType);
  itkGetModifiableObjectMacro(FixedImagePyramid, FixedImagePyramidType);

  itkSetObjectMacro(MovingImagePyramid, MovingImagePyramidType);
  itkGetModifiableObjectMacro(MovingImagePyramid, MovingImagePyramidType);

  void SetSchedules(const ScheduleType & fixedSchedule,
                    const ScheduleType & movingSchedule);

  itkGetConstMacro(FixedImagePyramidSchedule, ScheduleType);
  itkGetConstMacro(MovingImagePyramidSchedule, ScheduleType);

  void SetNumberOfLevels(SizeValueType numberOfLevels);

  itkGetConstMacro(NumberOfLevels, SizeValueType);

  itkGetConstMacro(CurrentLevel, SizeValueType);

  itkSetMacro(InitialTransformParameters, ParametersType);
  itkGetConstReferenceMacro(InitialTransformParameters, ParametersType);

  itkSetMacro(InitialTransformParametersOfNextLevel, ParametersType);
  itkGetConstReferenceMacro(InitialTransformParametersOfNextLevel, ParametersType);

  itkGetConstReferenceMacro(LastTransformParameters, ParametersType);

  const TransformOutputType * GetOutput() const;

  typedef ProcessObject::DataObjectPointerArraySizeType DataObjectPointerArraySizeType;
  using Superclass::MakeOutput;
  virtual DataObjectPointer MakeOutput(DataObjectPointerArraySizeType idx) ITK_OVERRIDE;

  virtual ModifiedTimeType GetMTime() const ITK_OVERRIDE;

#ifdef ITKV3_COMPATIBILITY
  // StartRegistration is an old API from before
  // this RegistrationMethod was a subclass of ProcessObject.
  // Historically, one could call StartRegistration() instead of
  // calling Update().  However, when called directly by the user, the
  // inputs to the RegistrationMethod may not be up to date.  This
  // may cause an unexpected behavior.
  //
  // Since we cannot eliminate StartRegistration for backward
  // compatibility reasons, we check whether StartRegistration was
  // called directly or whether Update() (which in turn called
  // StartRegistration()).
  void StartRegistration(void) { this->Update(); }
#endif

protected:
  MultiResolutionImageRegistrationMethod();
  virtual ~MultiResolutionImageRegistrationMethod() {}
  virtual void PrintSelf(std::ostream & os, Indent indent) const ITK_OVERRIDE;

  virtual void  GenerateData() ITK_OVERRIDE;

  void Initialize()
  throw ( ExceptionObject );

  void PreparePyramids(void);

  itkSetMacro(CurrentLevel, SizeValueType);

private:
  MultiResolutionImageRegistrationMethod(const Self &); //purposely not
                                                        // implemented
  void operator=(const Self &);                         //purposely not

  // implemented

  MetricPointer          m_Metric;
  OptimizerType::Pointer m_Optimizer;

  MovingImageConstPointer m_MovingImage;
  FixedImageConstPointer  m_FixedImage;

  TransformPointer    m_Transform;
  InterpolatorPointer m_Interpolator;

  MovingImagePyramidPointer m_MovingImagePyramid;
  FixedImagePyramidPointer  m_FixedImagePyramid;

  ParametersType m_InitialTransformParameters;
  ParametersType m_InitialTransformParametersOfNextLevel;
  ParametersType m_LastTransformParameters;

  FixedImageRegionType                m_FixedImageRegion;
  std::vector< FixedImageRegionType > m_FixedImageRegionPyramid;

  SizeValueType m_NumberOfLevels;
  SizeValueType m_CurrentLevel;

  bool m_Stop;

  ScheduleType m_FixedImagePyramidSchedule;
  ScheduleType m_MovingImagePyramidSchedule;

  bool m_ScheduleSpecified;
  bool m_NumberOfLevelsSpecified;
};
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkMultiResolutionImageRegistrationMethod.hxx"
#endif

#endif